mRNA_H-paniculata_contig20673.5369.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20673.5369.1
Unique NamemRNA_H-paniculata_contig20673.5369.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20673.5369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20673contigH-paniculata_contig20673:861..1717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size857
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20673.5369.1prot_H-paniculata_contig20673.5369.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20673 913..1410 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929539.7781763-UTR-H-paniculata_contig20673:860..9121622929539.7781763-UTR-H-paniculata_contig20673:860..912Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20673 861..912 +
1691480904.847419-UTR-H-paniculata_contig20673:860..9121691480904.847419-UTR-H-paniculata_contig20673:860..912Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20673 861..912 +
1622929539.8848577-UTR-H-paniculata_contig20673:1410..17171622929539.8848577-UTR-H-paniculata_contig20673:1410..1717Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20673 1411..1717 +
1691480904.8666716-UTR-H-paniculata_contig20673:1410..17171691480904.8666716-UTR-H-paniculata_contig20673:1410..1717Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20673 1411..1717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929539.874086-CDS-H-paniculata_contig20673:912..14101622929539.874086-CDS-H-paniculata_contig20673:912..1410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20673 913..1410 +
1691480904.856328-CDS-H-paniculata_contig20673:912..14101691480904.856328-CDS-H-paniculata_contig20673:912..1410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20673 913..1410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20673.5369.1

>prot_H-paniculata_contig20673.5369.1 ID=prot_H-paniculata_contig20673.5369.1|Name=mRNA_H-paniculata_contig20673.5369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MQIKTNPCVEWVWTELRAQGLSSGVCKAQWYILQNLPNWYTCTSVKQNSG
AKALSERNKKVVQLYKDYAVNSFFGWVQETPSWISHIGRLTPCSERRART
VSARMIPGIFHLNFAQQITFLQCVSSPSNGVGNGPIIYLHCYSLCDAPPL
VTLSVVSMRLFSVPR*
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mRNA from alignment at H-paniculata_contig20673:861..1717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20673.5369.1 ID=mRNA_H-paniculata_contig20673.5369.1|Name=mRNA_H-paniculata_contig20673.5369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=857bp|location=Sequence derived from alignment at H-paniculata_contig20673:861..1717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACACATTCATCCTGTGAAAGCAGACCACCAAGAATTTACCATCCACCT
CAATGCAAATCAAGACGAACCCATGCGTAGAATGGGTGTGGACGGAACTG
AGGGCTCAAGGGCTCAGTTCGGGTGTGTGCAAGGCACAGTGGTACATTCT
ACAGAATTTACCAAATTGGTATACTTGTACGAGTGTGAAGCAGAACAGTG
GGGCCAAGGCCCTGAGCGAAAGGAACAAGAAGGTGGTGCAGCTATACAAG
GATTACGCTGTCAACAGCTTCTTCGGGTGGGTGCAGGAAACCCCGAGCTG
GATCTCCCACATTGGGCGACTTACACCCTGTTCAGAAAGACGAGCAAGAA
CAGTGAGTGCACGAATGATACCTGGTATATTTCACTTAAATTTTGCACAG
CAAATAACATTCCTACAGTGTGTGTCTTCTCCATCCAATGGCGTCGGAAA
CGGGCCCATCATATATCTACACTGTTATAGTTTGTGTGATGCGCCCCCAC
TGGTGACACTGAGCGTTGTGTCGATGCGGCTGTTTTCTGTGCCACGTTAA
CATAGTGGGCACATCACCCCCCTGCATTGCCGCGCCTGATCACCTCAAGG
TTGGCTGCATGTTCCGCCGGGCGTAAGCAGTATATTGGTCACAATCAGAG
TGTAACTTCACAATCAGAATGCAGCCTGAGAGATCGCACAGATCCGTCAG
TTCGAAGAGTTAGACCTCACGGAGCCGCGTGAATGAAGGCTCTGGCCGAT
GCGAGAACGAACATAGCACTACAACGCCCCCGGTTTAATCATGGTGGAGT
TAGAGCTGAAATGGAACAAATTCACCGTTTCTGAAAGCTTGAACTTGATT
AATCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig20673:861..1717+

>mRNA_H-paniculata_contig20673.5369.1 ID=mRNA_H-paniculata_contig20673.5369.1|Name=mRNA_H-paniculata_contig20673.5369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig20673:861..1717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAATCAAGACGAACCCATGCGTAGAATGGGTGTGGACGGAACTGAG
GGCTCAAGGGCTCAGTTCGGGTGTGTGCAAGGCACAGTGGTACATTCTAC
AGAATTTACCAAATTGGTATACTTGTACGAGTGTGAAGCAGAACAGTGGG
GCCAAGGCCCTGAGCGAAAGGAACAAGAAGGTGGTGCAGCTATACAAGGA
TTACGCTGTCAACAGCTTCTTCGGGTGGGTGCAGGAAACCCCGAGCTGGA
TCTCCCACATTGGGCGACTTACACCCTGTTCAGAAAGACGAGCAAGAACA
GTGAGTGCACGAATGATACCTGGTATATTTCACTTAAATTTTGCACAGCA
AATAACATTCCTACAGTGTGTGTCTTCTCCATCCAATGGCGTCGGAAACG
GGCCCATCATATATCTACACTGTTATAGTTTGTGTGATGCGCCCCCACTG
GTGACACTGAGCGTTGTGTCGATGCGGCTGTTTTCTGTGCCACGTTAAAT
GCAAATCAAGACGAACCCATGCGTAGAATGGGTGTGGACGGAACTGAGGG
CTCAAGGGCTCAGTTCGGGTGTGTGCAAGGCACAGTGGTACATTCTACAG
AATTTACCAAATTGGTATACTTGTACGAGTGTGAAGCAGAACAGTGGGGC
CAAGGCCCTGAGCGAAAGGAACAAGAAGGTGGTGCAGCTATACAAGGATT
ACGCTGTCAACAGCTTCTTCGGGTGGGTGCAGGAAACCCCGAGCTGGATC
TCCCACATTGGGCGACTTACACCCTGTTCAGAAAGACGAGCAAGAACAGT
GAGTGCACGAATGATACCTGGTATATTTCACTTAAATTTTGCACAGCAAA
TAACATTCCTACAGTGTGTGTCTTCTCCATCCAATGGCGTCGGAAACGGG
CCCATCATATATCTACACTGTTATAGTTTGTGTGATGCGCCCCCACTGGT
GACACTGAGCGTTGTGTCGATGCGGCTGTTTTCTGTGCCACGTTAA
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