mRNA_H-paniculata_contig20672.5368.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20672.5368.1
Unique NamemRNA_H-paniculata_contig20672.5368.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20672.5368.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.670e-12
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   13 QISQLWSVLNVGKSTSTEDVFVSSPYDMIPSTPTYIHYIGSLTTPPCTE 159
            +I  LW VL++GK T T++VFV+  YD++PS P + HY+GSLTTPPCTE
Sbjct:   41 EIEHLWDVLDIGKPT-TDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTE 88
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BLAST of mRNA_H-paniculata_contig20672.5368.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 62.0 bits (149), Expect = 5.410e-10
Identity = 27/49 (55.10%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   13 QISQLWSVLNVGKSTSTEDVFVSSPYDMIPSTPTYIHYIGSLTTPPCTE 159
            +I  LW VL++G++T T++VF +  YD++PS P + HY+GSLTTPPCTE
Sbjct:  187 EIEHLWDVLDIGETT-TKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTE 234
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BLAST of mRNA_H-paniculata_contig20672.5368.1 vs. uniprot
Match: A0A2E1Q2R6_9PROT (Carbonate dehydratase n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=A0A2E1Q2R6_9PROT)

HSP 1 Score: 49.7 bits (117), Expect = 1.490e-5
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   16 ISQLWSVLNVGKSTSTEDVFVSSPYDMIPSTPTYIHYIGSLTTPPCTE 159
            +  +W  + + K  S E  F  +P D+IP T TY +YIGSLTTPPC+E
Sbjct:  189 VESVWRNIPIQKGASKEVNFKINPEDLIPRTRTYYNYIGSLTTPPCSE 236
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BLAST of mRNA_H-paniculata_contig20672.5368.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 3.930e-5
Identity = 19/49 (38.78%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 QISQLWSVLNVGKSTSTEDVFVSSPYDMIPSTPTYIHYIGSLTTPPCTE 159
            ++  +W+V+++ +  + E+ F+++ Y ++P+TP++  Y GSLTTPPCTE
Sbjct:  192 ELEPMWNVMDLNQDIA-EEQFMAAAYSLLPATPSFTTYSGSLTTPPCTE 239
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BLAST of mRNA_H-paniculata_contig20672.5368.1 vs. uniprot
Match: A0A1M5BV72_9RHOB (Carbonic anhydrase n=1 Tax=Loktanella atrilutea TaxID=366533 RepID=A0A1M5BV72_9RHOB)

HSP 1 Score: 47.4 bits (111), Expect = 9.230e-5
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    1 PLREQISQLWSVLNVGKSTSTEDVFVSSPYDMIPSTPTYIHYIGSLTTPPCTE 159
            P    I+QLW+V      T+     V S  D++PS  +Y+ ++GSLTTPPCTE
Sbjct:  148 PANPAIAQLWNVAPYDHDTTGSGEAVISIRDLLPSNQSYMRFMGSLTTPPCTE 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20672.5368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q9SMD6_9PHAE5.670e-1259.18Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
F6MHT6_SACJA5.410e-1055.10Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
A0A2E1Q2R6_9PROT1.490e-547.92Carbonate dehydratase n=1 Tax=Bdellovibrionaceae b... [more]
D8LB10_ECTSI3.930e-538.78Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A1M5BV72_9RHOB9.230e-543.40Carbonic anhydrase n=1 Tax=Loktanella atrilutea Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20672contigH-paniculata_contig20672:167..325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929539.7284248-CDS-H-paniculata_contig20672:166..3251622929539.7284248-CDS-H-paniculata_contig20672:166..325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20672 167..325 +
1691480904.8389611-CDS-H-paniculata_contig20672:166..3251691480904.8389611-CDS-H-paniculata_contig20672:166..325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20672 167..325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20672.5368.1prot_H-paniculata_contig20672.5368.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20672 167..325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20672.5368.1

>prot_H-paniculata_contig20672.5368.1 ID=prot_H-paniculata_contig20672.5368.1|Name=mRNA_H-paniculata_contig20672.5368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
PLREQISQLWSVLNVGKSTSTEDVFVSSPYDMIPSTPTYIHYIGSLTTPP
CTE
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mRNA from alignment at H-paniculata_contig20672:167..325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20672.5368.1 ID=mRNA_H-paniculata_contig20672.5368.1|Name=mRNA_H-paniculata_contig20672.5368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig20672:167..325+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACTACGAGAACAGATCAGCCAACTGTGGTCCGTCCTCAACGTAGGCAA
ATCGACGTCCACGGAAGACGTCTTTGTTTCAAGCCCTTACGACATGATCC
CCTCCACACCGACCTACATCCATTACATCGGCTCCTTGACCACGCCCCCG
TGCACTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20672:167..325+

>mRNA_H-paniculata_contig20672.5368.1 ID=mRNA_H-paniculata_contig20672.5368.1|Name=mRNA_H-paniculata_contig20672.5368.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig20672:167..325+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACTACGAGAACAGATCAGCCAACTGTGGTCCGTCCTCAACGTAGGCAA
ATCGACGTCCACGGAAGACGTCTTTGTTTCAAGCCCTTACGACATGATCC
CCTCCACACCGACCTACATCCATTACATCGGCTCCTTGACCACGCCCCCG
TGCACTGAGCCACTACGAGAACAGATCAGCCAACTGTGGTCCGTCCTCAA
CGTAGGCAAATCGACGTCCACGGAAGACGTCTTTGTTTCAAGCCCTTACG
ACATGATCCCCTCCACACCGACCTACATCCATTACATCGGCTCCTTGACC
ACGCCCCCGTGCACTGAG
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