mRNA_H-paniculata_contig2062.5356.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2062.5356.1
Unique NamemRNA_H-paniculata_contig2062.5356.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2062.5356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2062contigH-paniculata_contig2062:10435..10794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929538.231211-CDS-H-paniculata_contig2062:10434..107941622929538.231211-CDS-H-paniculata_contig2062:10434..10794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2062 10435..10794 +
1691480904.0875328-CDS-H-paniculata_contig2062:10434..107941691480904.0875328-CDS-H-paniculata_contig2062:10434..10794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2062 10435..10794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2062.5356.1prot_H-paniculata_contig2062.5356.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2062 10435..10794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2062.5356.1

>prot_H-paniculata_contig2062.5356.1 ID=prot_H-paniculata_contig2062.5356.1|Name=mRNA_H-paniculata_contig2062.5356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MPLDCIVTIFGVLFHHFGALTGLCENTVFATISSRANRHFEPQNSTLAQI
SECTKVVEHSQNCYNSIKGQWVLQIKVIGHDFNKTGKHSIGGLNLTSKML
NILEDTHLFDAKYPKTCRLF
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mRNA from alignment at H-paniculata_contig2062:10435..10794+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2062.5356.1 ID=mRNA_H-paniculata_contig2062.5356.1|Name=mRNA_H-paniculata_contig2062.5356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig2062:10435..10794+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCTCGATTGCATTGTAACTATATTTGGGGTTCTCTTTCACCACTT
CGGTGCCCTCACAGGCTTGTGTGAAAACACTGTTTTTGCCACGATTTCGA
GTAGGGCGAATCGGCATTTTGAGCCACAAAATAGTACACTCGCACAAATC
TCTGAGTGCACCAAAGTGGTCGAACACTCCCAAAATTGCTACAACTCGAT
CAAGGGGCAATGGGTCCTCCAAATAAAGGTCATTGGTCACGACTTTAACA
AGACAGGAAAGCACTCTATTGGGGGGTTGAACCTCACTTCTAAAATGTTG
AACATCTTGGAAGACACACACCTTTTTGACGCCAAGTACCCGAAAACATG
CAGACTTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig2062:10435..10794+

>mRNA_H-paniculata_contig2062.5356.1 ID=mRNA_H-paniculata_contig2062.5356.1|Name=mRNA_H-paniculata_contig2062.5356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig2062:10435..10794+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCTCGATTGCATTGTAACTATATTTGGGGTTCTCTTTCACCACTT
CGGTGCCCTCACAGGCTTGTGTGAAAACACTGTTTTTGCCACGATTTCGA
GTAGGGCGAATCGGCATTTTGAGCCACAAAATAGTACACTCGCACAAATC
TCTGAGTGCACCAAAGTGGTCGAACACTCCCAAAATTGCTACAACTCGAT
CAAGGGGCAATGGGTCCTCCAAATAAAGGTCATTGGTCACGACTTTAACA
AGACAGGAAAGCACTCTATTGGGGGGTTGAACCTCACTTCTAAAATGTTG
AACATCTTGGAAGACACACACCTTTTTGACGCCAAGTACCCGAAAACATG
CAGACTTTTTATGCCCCTCGATTGCATTGTAACTATATTTGGGGTTCTCT
TTCACCACTTCGGTGCCCTCACAGGCTTGTGTGAAAACACTGTTTTTGCC
ACGATTTCGAGTAGGGCGAATCGGCATTTTGAGCCACAAAATAGTACACT
CGCACAAATCTCTGAGTGCACCAAAGTGGTCGAACACTCCCAAAATTGCT
ACAACTCGATCAAGGGGCAATGGGTCCTCCAAATAAAGGTCATTGGTCAC
GACTTTAACAAGACAGGAAAGCACTCTATTGGGGGGTTGAACCTCACTTC
TAAAATGTTGAACATCTTGGAAGACACACACCTTTTTGACGCCAAGTACC
CGAAAACATGCAGACTTTTT
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