mRNA_H-paniculata_contig20502.5314.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 3.150e-18 Identity = 61/148 (41.22%), Postives = 82/148 (55.41%), Query Frame = 1
Query: 82 SDGRKVTPPITFKGTPFIPHTHS-HGEA-----GSIVWEISPAKHSRCGHPPDGMSYG-------GARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
+DG+KV+P I FKGTPFIP T S G++ S+ WEI PA ++ HP +GMS+G R G I+G+ G I Q +LVL D KCH D+ F + +DANT I I GG+T + QP D +LNK++K
Sbjct: 24 ADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWISGSWKLRPN-NGSIVQ----QRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMK 166
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 2.610e-17 Identity = 61/148 (41.22%), Postives = 81/148 (54.73%), Query Frame = 1
Query: 82 SDGRKVTPPITFKGTPFIPHTHS-HGEA-----GSIVWEISPAKHSRCGHPPDGMSYG-------GARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
+DG+KV+P ITFKGTPF P T S G++ S+ WEI PA ++ GHP +G+S+G R G I+G G I Q +LVL D K H D+ F + +DANT I I GGLT + QP D +LNK++K
Sbjct: 44 ADGKKVSPRITFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWISGRWKLRPN-NGSIVQ----QRPCILVLDDFKRHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDCMLNKQMK 186
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 6.640e-17 Identity = 61/148 (41.22%), Postives = 81/148 (54.73%), Query Frame = 1
Query: 82 SDGRKVTPPITFKGTPFIPHTHS-HGEA-----GSIVWEISPAKHSRCGHPPDGMSYG-------GARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
+DG+KV+P I FKGTPF P T S G++ S+ WEI PA ++ GHP +GMS+G R G I+G+ G I Q +LVL D KCH D+ F + +DANT I I G LT + QP D +LNK++K
Sbjct: 163 ADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPN-NGSIVQ----QRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMK 305
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 6.920e-17 Identity = 60/148 (40.54%), Postives = 82/148 (55.41%), Query Frame = 1
Query: 82 SDGRKVTPPITFKGTPFIPHTHS-HGEA-----GSIVWEISPAKHSRCGHPPDGMSYG-------GARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
+DG+KV+P I FKGTPFIP S G++ S+ WEI PA ++ HP +GMS+G R G I+G+ G I Q +LVL D KCH D+ + + +DANT I+I GGLT + QP D +LNK++K
Sbjct: 163 ADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPN-NGSIVQ----QRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMK 305
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.570e-15 Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = 1
Query: 82 SDGRKVTPPITFKGTPFI-PHTHSHGEA-----GSIVWEISPAKHSRCGHPPDGMSYG-------GARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
+DG+KV+P I FKGTPF P +G++ S+ WEI PA ++ GHP +GMS+G R G +G+ G I Q +LVL D KCH D+ F + +DANT I I GGLT + QP D LNK++K
Sbjct: 8 ADGKKVSPRIIFKGTPFTSPTVSGNGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPN-NGSIVQ----QRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLD--LNKQMK 148
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5K2N7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N7_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 2.790e-15 Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 3
Query: 492 LRGKYAAWSATTMADPKTRKLKLPGRGAVSMWVKEV*DQIPADLMRKCLNMCGFTLNLDGRENHEWYERAFGKNY 716
LRGKY A+SA+ +AD ++R+LK P RG VS W KE I + + C +C TL LDG E+H W E G++Y
Sbjct: 10 LRGKYTAYSASAVADARSRELKAPERGVVSAWCKEAWKSINPETFKTCFKICDLTLALDGSEDHAWCEHNLGEDY 84
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 7.380e-10 Identity = 58/161 (36.02%), Postives = 74/161 (45.96%), Query Frame = 1
Query: 82 SDGRKVTPPITFKGTPFIPHTHSHG------EAGSIVWEISPAKHSRCG-H-------------------PPDGMSYGGARITAGVINGNAGCDYG*TGRIAQGQNWPESSVLVLYDCKCHCDQKFPESWNKDANTDTILILGGLTAVNQPCDSVLNKEIK 486
+DG+KV+P I FKGTPFIP T S S+ WEI A +R G H PP S+ R G I G+ G I Q +LVL D KCH D+ F + + A T I I GGLT++ QP D +LNK++K
Sbjct: 345 ADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPN-NGSIVQ----QRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMK 499
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Match: A0A6H5JUV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV9_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 1.230e-7 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 82 SDGRKVTPPITFKGTPFIPHTHS-HGEA-----GSIVWEISPAKHSRCGHPPDGMSYG 237
+DG+KV+P I FKGTPFIP T S G++ S+ WEI PA ++ G+PP+GMS G
Sbjct: 36 ADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVTWEIHPANRAKHGYPPNGMSVG 93 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20502.5314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20502.5314.1 >prot_H-paniculata_contig20502.5314.1 ID=prot_H-paniculata_contig20502.5314.1|Name=mRNA_H-paniculata_contig20502.5314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp MRKCLNMCGFTLNLDGRENHEWYERAFGKNYRMILAEQRAEWEDVHGITLback to top mRNA from alignment at H-paniculata_contig20502:1184..2232+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20502.5314.1 ID=mRNA_H-paniculata_contig20502.5314.1|Name=mRNA_H-paniculata_contig20502.5314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1049bp|location=Sequence derived from alignment at H-paniculata_contig20502:1184..2232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20502:1184..2232+ >mRNA_H-paniculata_contig20502.5314.1 ID=mRNA_H-paniculata_contig20502.5314.1|Name=mRNA_H-paniculata_contig20502.5314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig20502:1184..2232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |