mRNA_H-paniculata_contig205.5311.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig205.5311.1
Unique NamemRNA_H-paniculata_contig205.5311.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig205.5311.1 vs. uniprot
Match: D7FKS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS6_ECTSI)

HSP 1 Score: 389 bits (1000), Expect = 2.440e-124
Identity = 217/345 (62.90%), Postives = 255/345 (73.91%), Query Frame = 2 
Query:  608 QREYTPPQAGRDIYGSAGSRVHIEFGDLTPGARKGRRA-RAKFNPDTGDLVATRITPGDVAMITGVSAVVAAMQRRNRNRYLEEK-TGE-DDANGSPSSARG-VRKAAVVTTMQVALYCERKGGREDVLGTLDALSQNADVTSPGGLSVLVNEVCLTLLRAEKDWVGTTGGVKEYTPEGRSSRDGKRDENTSPKARAKRDFNRAVTRERSKWERETVSNTPERGFSTSRAPGWRGSEGTPAGTYAVATLMVAWAGLRSTPPQPAVRTGSSWWWQDGKKDSDGSKRGFSVENRQSAVNFLEWLGDEAAEGRGENVLDLEVLWTPADVDDSLDRDDLYTKWPELRGV 1630
            Q  Y  P+AGRDIYGS GSR HI F     G R GRR+ RA+FNP  GD  +T ITPGDVAMI GVSA VAA+QR NR R+++E+ +G+   A   P S RG   + AVVTT+Q+ LYC+R+GG+ DVL TLD LSQ ADV SP GLS L+NEVCLTLLR+ +DW+G TG VK Y  EGRS+  GK+   +SP +RAKRDFNRA  RERSKWERETVSNTP+RGFS+S AP W G     +GTYAVATL+VAW+GL STPP+   R G  W+ +D +   D     FSV NRQSA+  LEWLGDEAAEGRGENVLD+EVLWTPAD DDSLDR+DL TKWPELR +
Sbjct:  203 QGRYQRPRAGRDIYGSEGSRFHIRF----DGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEGSGQRPSAPLPPRSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKK---SSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGG-WFTRDSRDRDDDRGVEFSVVNRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 539
[Close]
BLAST of mRNA_H-paniculata_contig205.5311.1 vs. uniprot
Match: R1FD01_EMIHU (Uncharacterized protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FD01_EMIHU)

HSP 1 Score: 86.3 bits (212), Expect = 1.220e-14
Identity = 78/249 (31.33%), Postives = 116/249 (46.59%), Query Frame = 2 
Query:  893 SARGVR---KAAVVTTMQVALYCERKGGREDVLGTLDALSQNADVTSPGGLSVLVNEVCLTLLRAEKDWVGTTGGVKEYTPEGRSSRDGKRDENTSPKARAKRDFNRAVTRERSKWERETVSNTPERGFSTSRAPGWRGSEGTPAGTYAVATLMVAWAGLRSTPPQPAVRTGSSWWWQDGKKDSDGSKRGFSVENRQSAVNFLEWLGDEAAEGRGENVLDLEVLWTPADVDDSLDRDDLYTKWPELRGV 1630
            SARG+    KA     +QVA YC+ +   + + G L +++++A+  S  GL  L ++ CL +LR+ KDW+    G  E T  G  + D             +  +NR V +ERSKWE        E+G  T  APG          TY VATL+V    LR     P+V T +                     + + A++ L    D + E   +N+L  E+LWTP D +D ++RDDL+  +PEL  V
Sbjct:  135 SARGIEASDKAGAALCLQVACYCDDRN--DSLYGRLQSVARSAETQSYEGLQRLCSDSCLAMLRSSKDWLA---GRTESTTAGLLTND------------VETSYNRLVVQERSKWE-------SEQGALTRSAPGQP--------TYMVATLVVL---LRQGSELPSVSTAA---------------------DLREAISAL--AADVSVE---DNLLAAELLWTPEDGNDVMERDDLFLNFPELVNV 322
[Close]
BLAST of mRNA_H-paniculata_contig205.5311.1 vs. uniprot
Match: A0A7S0QBA5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBA5_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 1.050e-13
Identity = 84/250 (33.60%), Postives = 115/250 (46.00%), Query Frame = 2 
Query:  893 SARGVRKA----AVVTTMQVALYCERKGGREDVL-GTLDALSQNADVTSPGGLSVLVNEVCLTLLRAEKDWVG--TTGGVKEYTPEGRSSRDGKRDENTSPKARAKRDFNRAVTRERSKWERETVSNTPERGFSTSRAPGWRGSEGTPAGTYAVATLMVAWAGLRSTPPQPAVRTGSSWWWQDGKKDSDGSKRGFSVENRQSAVNFLEWLGDEAAEGRGENVLDLEVLWTPADVDDSLDRDDLYTKWPEL 1621
            S+RG+ +A         +QVA YC   G R++ L G L +L++ AD +S  GL  LV++ CL  LR+ KDW+   TT   K     G  S D             +  +NR V +ERSKWE E  S T             R S G    TY VATL+V    LR+    P V TG                    V   + A++ L    D + E   +N++  EVLWTP D +D +DRDD++  +PEL
Sbjct:   45 SSRGIEQADEAAGAAYCLQVACYC---GDRQNSLYGKLQSLARTADTSSYEGLQQLVSDTCLATLRSSKDWLAARTTSETK-----GLFSND------------VESQYNRIVVKERSKWESEQKSLT-------------RTSAGE--ATYMVATLVVL---LRNGSELPEV-TG--------------------VNELREAISQL--AADVSIE---DNLIAAEVLWTPEDPNDVMDRDDMFLNFPEL 230
[Close]
BLAST of mRNA_H-paniculata_contig205.5311.1 vs. uniprot
Match: A0A6T9D2F6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9D2F6_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 2.190e-13
Identity = 76/246 (30.89%), Postives = 110/246 (44.72%), Query Frame = 2 
Query:  893 SARGVRKAAVVTT---MQVALYCERKGGREDVLGTLDALSQNADVTSPGGLSVLVNEVCLTLLRAEKDWVGTTGGVKEYTPEGRSSRDGKRDENTSPKARAKRDFNRAVTRERSKWERETVSNTPERGFSTSRAPGWRGSEGTPAGTYAVATLMVAWAGLRSTPPQPAVRTGSSWWWQDGKKDSDGSKRGFSVENRQSAVNFLEWLGDEAAEGRGENVLDLEVLWTPADVDDSLDRDDLYTKWPEL 1621
            S+RG+  A    T   +QVA YCE +  +  + G L ++++ AD  S  GL  L ++ CL +LR  KDW+         T    S+      E+T         +NR V +ER+KW+ E  S               R + G P  TY VATL+V    LRS    PA+                       V + + A+  L    D + E   +N+L  EVLWTP D +D +DRDD++  +PEL
Sbjct:    8 SSRGIEAADTAGTALCLQVACYCEDR--QTSLAGKLQSIARTADAGSYEGLQALCSDTCLAMLRTSKDWLAAR------TVSSTSTMFQNDVEST---------YNRLVVQERAKWDMEAKSLK-------------RSAPGQP--TYMVATLVVL---LRSGSELPAIS---------------------GVSDLREAIAQL--AADVSVE---DNLLAAEVLWTPEDTNDVMDRDDMFLNFPEL 192
[Close]
BLAST of mRNA_H-paniculata_contig205.5311.1 vs. uniprot
Match: A0A835ZEJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.810e-13
Identity = 76/237 (32.07%), Postives = 109/237 (45.99%), Query Frame = 2 
Query:  923 VTTMQVALYCERKGGREDVLGTLDALSQNADVTSPGGLSVLVNEVCLTLLRAEKDWVGTTGGVKEYTPEGRSSRDGKRDENTSPKARAKRDFNRAVTRERSKWERETVSNTPERGFSTSRAPGWRGSEGTPAGTYAVATLMVAWAGLRSTPPQPAVRTGSSWWWQDGKKDSDGSKRGFSVE---NRQSAV-NFLEWLGDEAAEGRGENVLDLEVLWTPADVDDSLDRDDLYTKWPEL 1621
            V  +QVAL    +  R  +L  L ++++ A+ +S GGLS  V+EVCL L+R + DW+ +    + + P  RS+             RA+  FN     ER+K ERETVS       S SR       E     T AV T+++A  G                         +  KR F +E   N  SA+ N L  +  +A    GENVL +E+LWTP +  +SLDR  +   +PEL
Sbjct:  201 VVKLQVALNASDRSSR-GILAQLKSIAERAETSSRGGLSTAVSEVCLALVRRQPDWIASASQYEYFAP--RSAE------------RAEAVFNTYAIAERTKVERETVSRFGGEDLSDSRRSDGVRPEDLGKPTQAVVTIVLALKG-------------------------ESLKR-FQLERSINSASALRNVLTQVAGDATTDDGENVLGVELLWTPEEPWESLDRQAVLEDFPEL 396
[Close]
BLAST of mRNA_H-paniculata_contig205.5311.1 vs. uniprot
Match: A0A0M0K0F2_9EUKA (Membrane protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0F2_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 6.780e-12
Identity = 74/251 (29.48%), Postives = 112/251 (44.62%), Query Frame = 2 
Query:  893 SARGVRKA---AVVTTMQVALYCERKGGREDVLGTLDALSQNADVTSPGGLSVLVNEVCLTLLRAEKDWVG--TTGGVKEYTPEGRSSRDGKRDENTSPKARAKRDFNRAVTRERSKWERETVSNTPERGFSTSRAPGWRGSEGTPAGTYAVATLMVAWAGLRSTPPQPAVRTGSSWWWQDGKKDSDGSKRGFSVENRQSAVNFLEWLGDEAAEGRGENVLDLEVLWTPADVDDSLDRDDLYTKWPELRGV 1630
            S+RG+  +        +QVA YC+ +  +  + G L+ ++ +AD  S  GL  LV++ CL +LR+ KDW+   T   +             K D + +        +NR V  ERSKWE E  +               R + G P  TY VATL+V    LRS  P   +               +G  R  +++N  +AV+              +N+L  EVLWTP D +D +DRD+L+  +PEL  V
Sbjct:   42 SSRGIEASDQPGAALCLQVACYCDDR--QNSLFGKLNKIASSADTDSELGLQSLVSDTCLAILRSSKDWLAARTESEIAGLL---------KNDVDAA--------YNRLVVTERSKWEVEQKALK-------------RTAPGQP--TYMVATLVVL---LRSAQPLKPI-------------SQNGDLRD-ALQNLAAAVSV------------DDNLLAAEVLWTPEDTNDVMDRDELFLNFPELVSV 229
[Close]
BLAST of mRNA_H-paniculata_contig205.5311.1 vs. uniprot
Match: A0A7S2X718_9EUKA (Hypothetical protein n=3 Tax=Lotharella TaxID=74819 RepID=A0A7S2X718_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-11
Identity = 71/233 (30.47%), Postives = 106/233 (45.49%), Query Frame = 2 
Query:  923 VTTMQVALYCERKGGREDVLGTLDALSQNADVTSPGGLSVLVNEVCLTLLRAEKDWVGTTGGVKEYTPEGRSSRDGKRDENTSPKARAKRDFNRAVTRERSKWERETVSNTPERGFSTSRAPGWRGSEGTPAGTYAVATLMVAWAGLRSTPPQPAVRTGSSWWWQDGKKDSDGSKRGFSVENRQSAVNFLEWLGDEAAEGRGENVLDLEVLWTPADVDDSLDRDDLYTKWPEL 1621
            V  +QVA+YC  +G    + G L+ L+  AD  S  GL  LV E  L LLR+E+DWV    G  E   +G     GK ++  S        FN+A+ +ER+K+E E        G +                +Y + T+MVA   LR  P  P +R              D  +   ++ + ++++               EN+L  EVLWTP D DDSL R++++ K+PEL
Sbjct:  188 VMLLQVAVYCGDRGPNS-LYGRLNNLAAGADTWSEEGLRNLVQETTLALLRSEEDWVA---GRSETFQKGML---GKSNDVESA-------FNQALLKERAKFEEENTGRLKRVGANKP--------------SYMIVTVMVA---LRDAPNLPTIR------------GLDEMRSALAMTSARASIE--------------ENLLAAEVLWTPEDPDDSLTREEVFLKFPEL 363
[Close]
BLAST of mRNA_H-paniculata_contig205.5311.1 vs. uniprot
Match: A0A7S4DSS3_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DSS3_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 3.910e-11
Identity = 70/233 (30.04%), Postives = 106/233 (45.49%), Query Frame = 2 
Query:  923 VTTMQVALYCERKGGREDVLGTLDALSQNADVTSPGGLSVLVNEVCLTLLRAEKDWVGTTGGVKEYTPEGRSSRDGKRDENTSPKARAKRDFNRAVTRERSKWERETVSNTPERGFSTSRAPGWRGSEGTPAGTYAVATLMVAWAGLRSTPPQPAVRTGSSWWWQDGKKDSDGSKRGFSVENRQSAVNFLEWLGDEAAEGRGENVLDLEVLWTPADVDDSLDRDDLYTKWPEL 1621
            V  +QVA+YC  +G    + G L+ L+  AD  S  GL  LV E  L LLR+E+DWV    G  E   +G     GK ++  S        FN+A+ +ER+K+E E        G +                +Y + T+MVA   LR  P  P +R              D  +   ++ + ++++               EN+L  EVLWTP D +DSL R++++ K+PEL
Sbjct:  185 VMLLQVAVYCGDRGPNS-LYGRLNNLAAGADTWSEEGLRNLVQETTLALLRSEEDWVA---GRSETFQKGML---GKSNDVESA-------FNQALLKERAKFEEENTGRLKRVGANKP--------------SYMIVTVMVA---LRDAPNLPTIR------------GLDEMRSALAMTSARASIE--------------ENLLAAEVLWTPEDPEDSLTREEVFLKFPEL 360
[Close]
BLAST of mRNA_H-paniculata_contig205.5311.1 vs. uniprot
Match: A0A7S0H5R7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H5R7_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 3.930e-10
Identity = 71/233 (30.47%), Postives = 105/233 (45.06%), Query Frame = 2 
Query:  923 VTTMQVALYCERKGGREDVLGTLDALSQNADVTSPGGLSVLVNEVCLTLLRAEKDWVGTTGGVKEYTPEGRSSRDGKRDENTSPKARAKRDFNRAVTRERSKWERETVSNTPERGFSTSRAPGWRGSEGTPAGTYAVATLMVAWAGLRSTPPQPAVRTGSSWWWQDGKKDSDGSKRGFSVENRQSAVNFLEWLGDEAAEGRGENVLDLEVLWTPADVDDSLDRDDLYTKWPEL 1621
            V  +QVA+YC  +G +  +   L+ L + AD  S  GL  LV E  + LLR+E+DWV    G  E   +G     GK ++  S        FN A+ +ER+K+E E VS   +    T   P           ++ V T++VA   LR  P  P V                       +E+ ++A+         A     EN+L  EVLWTP D  D+L R++++ K+PEL
Sbjct:  183 VMLLQVAVYCGDRG-KNSLFSRLNNLGREADTWSEQGLKNLVQESTIALLRSEEDWVA---GRSETFQKGMF---GKSNDVESA-------FNAALLQERAKFEEENVSKRSK--IQTPDKP-----------SHMVVTILVA---LRDAPSLPTVS---------------------GIEDMRAALAMT-----SARASIEENLLAAEVLWTPEDSSDTLSREEVFLKFPEL 359
[Close]
BLAST of mRNA_H-paniculata_contig205.5311.1 vs. uniprot
Match: A0A6T0A215_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6T0A215_CHRCT)

HSP 1 Score: 69.3 bits (168), Expect = 6.780e-9
Identity = 72/235 (30.64%), Postives = 105/235 (44.68%), Query Frame = 2 
Query:  932 MQVALYCERKGGREDVL-GTLDALSQNADVTSPGGLSVLVNEVCLTLLRAEKDWVG--TTGGVKEYTPEGRSSRDGKRDENTSPKARAKRDFNRAVTRERSKWERET--VSNTPERGFSTSRAPGWRGSEGTPAGTYAVATLMVAWAGLRSTPPQPAVRTGSSWWWQDGKKDSDGSKRGFSVENRQSAVNFLEWLGDEAAEGRGENVLDLEVLWTPADVDDSLDRDDLYTKWPEL 1621
            +Q+A YC   G RE  L G L +L++ A+  +  GL  LV++ CL +LR+  DW+   T+  +K +      S+                 +NR V +ERSKWE E   +S T      TS+A       G P  TY V TL+V    LR     PA+                           + A+  L    D + E   +N++  EVLWTP + DD +DRDD++  +PEL
Sbjct:  184 IQLACYC---GDREKSLYGRLQSLARTAETDTYEGLQQLVSDTCLAMLRSSNDWLAARTSTNLKGFFKNDVESQ-----------------YNRIVVQERSKWESEQQQLSRT------TSKA-------GQP--TYMVVTLVVL---LREGSELPAIS---------------------GTPTLRDAIAQL--AADVSVE---DNLIAAEVLWTPEEDDDVMDRDDMFLNFPEL 354
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig205.5311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKS6_ECTSI2.440e-12462.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
R1FD01_EMIHU1.220e-1431.33Uncharacterized protein (Fragment) n=3 Tax=Emilian... [more]
A0A7S0QBA5_9EUKA1.050e-1333.60Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A6T9D2F6_9EUKA2.190e-1330.89Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A835ZEJ7_9STRA6.810e-1332.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0M0K0F2_9EUKA6.780e-1229.48Membrane protein n=1 Tax=Chrysochromulina tobinii ... [more]
A0A7S2X718_9EUKA1.260e-1130.47Hypothetical protein n=3 Tax=Lotharella TaxID=7481... [more]
A0A7S4DSS3_9EUKA3.910e-1130.04Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S0H5R7_9EUKA3.930e-1030.47Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6T0A215_CHRCT6.780e-930.64Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig205contigH-paniculata_contig205:25690..29114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue3.3e-15
Seed eggNOG ortholog2903.EOD13352
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Protein of unknown function (DUF1517)
EggNOG OGs2QUI9@2759,COG4371@1
Ec32 ortholog descriptionProtein of unknown function DUF1517
Ec32 orthologEc-21_001970.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2090
Cds size1563
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig205.5311.1prot_H-paniculata_contig205.5311.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig205 25760..28657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929533.3515594-UTR-H-paniculata_contig205:25689..257591622929533.3515594-UTR-H-paniculata_contig205:25689..25759Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig205 25690..25759 +
1691480902.0488863-UTR-H-paniculata_contig205:25689..257591691480902.0488863-UTR-H-paniculata_contig205:25689..25759Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig205 25690..25759 +
1622929533.416346-UTR-H-paniculata_contig205:28657..291141622929533.416346-UTR-H-paniculata_contig205:28657..29114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig205 28658..29114 +
1691480902.1088707-UTR-H-paniculata_contig205:28657..291141691480902.1088707-UTR-H-paniculata_contig205:28657..29114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig205 28658..29114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929533.3705223-CDS-H-paniculata_contig205:25759..267431622929533.3705223-CDS-H-paniculata_contig205:25759..26743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig205 25760..26743 +
1691480902.0604415-CDS-H-paniculata_contig205:25759..267431691480902.0604415-CDS-H-paniculata_contig205:25759..26743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig205 25760..26743 +
1622929533.3817835-CDS-H-paniculata_contig205:27027..271031622929533.3817835-CDS-H-paniculata_contig205:27027..27103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig205 27028..27103 +
1691480902.0677056-CDS-H-paniculata_contig205:27027..271031691480902.0677056-CDS-H-paniculata_contig205:27027..27103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig205 27028..27103 +
1622929533.394434-CDS-H-paniculata_contig205:27552..278921622929533.394434-CDS-H-paniculata_contig205:27552..27892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig205 27553..27892 +
1691480902.0757678-CDS-H-paniculata_contig205:27552..278921691480902.0757678-CDS-H-paniculata_contig205:27552..27892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig205 27553..27892 +
1622929533.405789-CDS-H-paniculata_contig205:28494..286571622929533.405789-CDS-H-paniculata_contig205:28494..28657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig205 28495..28657 +
1691480902.0954692-CDS-H-paniculata_contig205:28494..286571691480902.0954692-CDS-H-paniculata_contig205:28494..28657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig205 28495..28657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig205.5311.1

>prot_H-paniculata_contig205.5311.1 ID=prot_H-paniculata_contig205.5311.1|Name=mRNA_H-paniculata_contig205.5311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=521bp
MLSQRSPIFAIVFFYSATNVRALVPPRSTWTFSSAGLHAYRSSAKCGMIG
RTAERRGVYYMSKACLTKTAAHTVGTSILMASATCCKEERSLTAAIPDAR
GKRHRLGRKANRGMNPAASPVYILRAAVTVAAATTACSGSVAAALTGGRI
GGGYTGARENSRPSAPPIQQQQPYYQRQSQREYTPPQAGRDIYGSAGSRV
HIEFGDLTPGARKGRRARAKFNPDTGDLVATRITPGDVAMITGVSAVVAA
MQRRNRNRYLEEKTGEDDANGSPSSARGVRKAAVVTTMQVALYCERKGGR
EDVLGTLDALSQNADVTSPGGLSVLVNEVCLTLLRAEKDWVGTTGGVKEY
TPEGRSSRDGKRDENTSPKARAKRDFNRAVTRERSKWERETVSNTPERGF
STSRAPGWRGSEGTPAGTYAVATLMVAWAGLRSTPPQPAVRTGSSWWWQD
GKKDSDGSKRGFSVENRQSAVNFLEWLGDEAAEGRGENVLDLEVLWTPAD
VDDSLDRDDLYTKWPELRGV*
back to top

mRNA from alignment at H-paniculata_contig205:25690..29114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig205.5311.1 ID=mRNA_H-paniculata_contig205.5311.1|Name=mRNA_H-paniculata_contig205.5311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3425bp|location=Sequence derived from alignment at H-paniculata_contig205:25690..29114+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCAACCACACCATCCAGTACTCTATCTCCCCGTTGATATCTGCCGTAC
ATGTCCTCGGAGATCTAGCCATGTTATCTCAGCGATCACCCATTTTTGCG
ATCGTCTTTTTCTATAGCGCCACAAACGTGAGAGCTTTAGTGCCGCCAAG
GTCAACTTGGACGTTTTCTTCGGCTGGGCTCCACGCGTACCGCAGCTCCG
CCAAATGCGGCATGATTGGCCGCACGGCTGAGCGTAGAGGAGTTTACTAC
ATGAGCAAGGCTTGCTTAACAAAAACTGCCGCACATACTGTAGGCACTTC
GATTTTGATGGCATCGGCTACATGTTGTAAAGAAGAGAGAAGCCTGACCG
CCGCTATCCCCGATGCGCGAGGCAAACGACATCGGCTTGGACGTAAGGCA
AACCGGGGGATGAACCCCGCTGCTTCCCCCGTCTACATCCTCAGAGCAGC
GGTAACAGTAGCAGCAGCAACCACGGCTTGCTCGGGATCGGTTGCAGCCG
CACTGACCGGGGGTAGAATAGGTGGAGGGTACACTGGCGCTCGAGAAAAC
AGCCGCCCAAGCGCCCCTCCTATTCAGCAGCAGCAGCCGTACTACCAGAG
GCAGTCGCAGCGAGAGTATACCCCACCTCAGGCCGGGCGAGACATTTACG
GCAGCGCGGGAAGTCGCGTGCACATCGAGTTCGGCGATCTCACCCCCGGC
GCAAGGAAAGGGCGCCGCGCAAGAGCTAAATTCAACCCCGACACAGGAGA
CTTAGTGGCCACCAGGATTACCCCAGGGGACGTGGCAATGATAACAGGGG
TCAGCGCCGTTGTAGCGGCAATGCAGCGCCGCAATCGTAATCGTTACCTC
GAAGAAAAAACCGGTGAGGATGATGCTAATGGATCTCCATCTTCTGCGCG
CGGAGTTAGGAAAGCCGCTGTGGTGACAACGATGCAGGTGGCATTATATT
GCGAAAGGAAAGGCGGTCGTGAAGACGTGTTGGGAACGCTGGATGCGCTG
TCCCAAAACGCGGACGTAACGAGTCCCGGCGGTTTGTCCGTCCTTGTTAA
CGAGGTATCGTCCGTTGATTCACTGTACCCATACTCCCCGAGCGTGTGGC
ATCAGCTTGCTCGCGCGCGAGATTTTCGATGTCTCACCGCGTCCGGCTAT
GTATTCGCACTACTGATTGATCGTAAGTGCAATTGAATTGTGCTTGTGTG
CTTGCTAGCACCTAAGCACTTTGTGTACGACGGACAGTTCGACATTGCAC
ATATCCTCTATTGTTTTTGAATTTCAATGCTGCAAGAAGTCGGCGACGCG
TCCGTGACGTGCGCACAATAACCGATGTCTGTTGCCAGGTGTGCCTGACG
CTGCTCCGCGCGGAGAAGGACTGGGTTGGTACAACCGGGGGGGTCAAGGA
GTACACGCCGGAAGGTTGAAAAATTCTTTCAAAATTTACCATGGCTATGT
GAAAGTACGGTGCTTCGCGTAGCCGGTACGTGCAGTTATTCTTCACCGGC
ATCGCCGCGATCTCAATGCGCTTGCCCATCAAGTTGACTCAAATTGACTC
CTCTCTCCTTAATCTTTTATGGTGCCCCAACAGCAAATCTTGTGCCAGGG
AACGCCTGTTATTCGTTGCACCTAAATGTTGACTGACTTGCCAACATGGT
TATCAGCTTCATCAGCAGCGTAAACACCCTTTGTAATCTCCCAGCTCGTT
TAGCTTGTCGGGTCGCGGTCAGGCACTTATAATCCTGCACTTACAATGCA
CGAGTAGACAGTGCTTGCAGAGTCAGTTGCGAATCCGTTCTCGGTCTTTT
TACCGCGCGTTGACTGAATGGCGTCAAATTGTATGCTTTTATGAATCACA
TATTTTCAAGCAGGCCGTTCGAGCCGTGACGGAAAACGCGACGAAAACAC
TAGCCCCAAAGCTAGGGCCAAACGTGACTTCAACCGGGCTGTCACGCGTG
AGCGATCGAAGTGGGAGCGAGAGACGGTGTCCAATACGCCCGAGCGCGGA
TTTAGCACCAGCCGAGCGCCGGGATGGAGGGGCTCTGAAGGTACTCCCGC
GGGCACATACGCGGTAGCAACGTTGATGGTCGCGTGGGCCGGCTTGAGAA
GCACCCCGCCACAGCCTGCCGTACGAACGGGCAGCTCATGGTGGTGGCAG
GATGGCAAGAAAGACAGCGACGGTAGCAAACGAGGGTTCAGTGTCGAAAA
CAGGTATAAGTATGCTGTGTAAATGCAGCGTCGCATGAAGCAATAAAGGA
TTACGATGAGGTGTGAAAAGAAGCAGATCTGTCTGGACCGCGAGAGCAGA
TGAAATTGTCGGTGATTTGTTAAAAGGGTGTAGTGCAAGAGTAGATATAA
TGACCTTCATACGGTAGTGCATATACATGTGTAAGGAGCGGTCGCCGCCG
TAAGGCACAGCAGACGCCGCTGGGACGGGTATGAGTGAGGTCTATGATGT
CCATATTCGCTGTCGCTAGCGAGATCTTCTTGTGAGAGGTAAAGGCGATT
TCTTTCTCAGATTGTGCGCAACATCGCTGATGTAATCCTTCATTTCCCCC
CACATACCCGCTTCTTTGTGAAGAGCTCATTCGTTTTTTCATGACGTACG
TCTGAGCACTGTTCCAAAGGATGATTGGACAGAAGTCAACCACCTCTTTA
TCCTTTGCACATATCGTGATAATTGAGTGGCATTCTGCGCAAAGCAGCAT
ACAGTAGGCATCAGCGAATGCCTTCCCGCATCCACCCGCCCGCTCGCCCC
CCTCGCCCCGTATTATTAACCGCCCTGTTCCATTCGTGTTCTTTTTGATT
ACCAGACAATCTGCTGTGAACTTTCTAGAATGGTTGGGTGACGAGGCCGC
AGAAGGGCGAGGAGAAAACGTTTTAGATCTGGAGGTGCTTTGGACTCCTG
CTGATGTGGATGATTCGCTTGATAGGGACGATCTTTATACCAAGTGGCCG
GAACTCAGAGGCGTGTAAGGGGAGTTGATTGCGTACGTAAAGCACGGTGT
CCCCACCGCCGAAAAAATGTGGCAATGTCGTTGAATCGCCAGCCGGTTCC
GTTGATAAAATATCAAGTTTTAATCAGGGTACACTCTTTTTGTGTTGTAT
TCTTAGAGTAGATGGAAGCCACTTTTGACTATTGTATGCGTTAAGCAGTG
TATCTCAGTGTCGTTTCTGTGGGGCTGGACTAGAGGAATTCTTCCACCTT
GAAGAGAAGTACCCGTTGTAGGGATGTGTGGTTTGCCTTGACAATAGAGT
TGGCCATATCAGTAAACTGTGGGCATCTTGTCCCCTTATTTATGGGCCAA
AGGCAGTAGTTGGGGTATGCAAAGACAGGTCGCTGACATGGGCATTGGTA
CCTTCACCATCCCGTAGGTGAATAGTGGAAGCAGTACGGGGAGGTTTAAT
GGATTCATGTTGTTCTGAGCACAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig205:25690..29114+

>mRNA_H-paniculata_contig205.5311.1 ID=mRNA_H-paniculata_contig205.5311.1|Name=mRNA_H-paniculata_contig205.5311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3126bp|location=Sequence derived from alignment at H-paniculata_contig205:25690..29114+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTATCTCAGCGATCACCCATTTTTGCGATCGTCTTTTTCTATAGCGC
CACAAACGTGAGAGCTTTAGTGCCGCCAAGGTCAACTTGGACGTTTTCTT
CGGCTGGGCTCCACGCGTACCGCAGCTCCGCCAAATGCGGCATGATTGGC
CGCACGGCTGAGCGTAGAGGAGTTTACTACATGAGCAAGGCTTGCTTAAC
AAAAACTGCCGCACATACTGTAGGCACTTCGATTTTGATGGCATCGGCTA
CATGTTGTAAAGAAGAGAGAAGCCTGACCGCCGCTATCCCCGATGCGCGA
GGCAAACGACATCGGCTTGGACGTAAGGCAAACCGGGGGATGAACCCCGC
TGCTTCCCCCGTCTACATCCTCAGAGCAGCGGTAACAGTAGCAGCAGCAA
CCACGGCTTGCTCGGGATCGGTTGCAGCCGCACTGACCGGGGGTAGAATA
GGTGGAGGGTACACTGGCGCTCGAGAAAACAGCCGCCCAAGCGCCCCTCC
TATTCAGCAGCAGCAGCCGTACTACCAGAGGCAGTCGCAGCGAGAGTATA
CCCCACCTCAGGCCGGGCGAGACATTTACGGCAGCGCGGGAAGTCGCGTG
CACATCGAGTTCGGCGATCTCACCCCCGGCGCAAGGAAAGGGCGCCGCGC
AAGAGCTAAATTCAACCCCGACACAGGAGACTTAGTGGCCACCAGGATTA
CCCCAGGGGACGTGGCAATGATAACAGGGGTCAGCGCCGTTGTAGCGGCA
ATGCAGCGCCGCAATCGTAATCGTTACCTCGAAGAAAAAACCGGTGAGGA
TGATGCTAATGGATCTCCATCTTCTGCGCGCGGAGTTAGGAAAGCCGCTG
TGGTGACAACGATGCAGGTGGCATTATATTGCGAAAGGAAAGGCGGTCGT
GAAGACGTGTTGGGAACGCTGGATGCGCTGTCCCAAAACGCGGACGTAAC
GAGTCCCGGCGGTTTGTCCGTCCTTGTTAACGAGATGTTATCTCAGCGAT
CACCCATTTTTGCGATCGTCTTTTTCTATAGCGCCACAAACGTGAGAGCT
TTAGTGCCGCCAAGGTCAACTTGGACGTTTTCTTCGGCTGGGCTCCACGC
GTACCGCAGCTCCGCCAAATGCGGCATGATTGGCCGCACGGCTGAGCGTA
GAGGAGTTTACTACATGAGCAAGGCTTGCTTAACAAAAACTGCCGCACAT
ACTGTAGGCACTTCGATTTTGATGGCATCGGCTACATGTTGTAAAGAAGA
GAGAAGCCTGACCGCCGCTATCCCCGATGCGCGAGGCAAACGACATCGGC
TTGGACGTAAGGCAAACCGGGGGATGAACCCCGCTGCTTCCCCCGTCTAC
ATCCTCAGAGCAGCGGTAACAGTAGCAGCAGCAACCACGGCTTGCTCGGG
ATCGGTTGCAGCCGCACTGACCGGGGGTAGAATAGGTGGAGGGTACACTG
GCGCTCGAGAAAACAGCCGCCCAAGCGCCCCTCCTATTCAGCAGCAGCAG
CCGTACTACCAGAGGCAGTCGCAGCGAGAGTATACCCCACCTCAGGCCGG
GCGAGACATTTACGGCAGCGCGGGAAGTCGCGTGCACATCGAGTTCGGCG
ATCTCACCCCCGGCGCAAGGAAAGGGCGCCGCGCAAGAGCTAAATTCAAC
CCCGACACAGGAGACTTAGTGGCCACCAGGATTACCCCAGGGGACGTGGC
AATGATAACAGGGGTCAGCGCCGTTGTAGCGGCAATGCAGCGCCGCAATC
GTAATCGTTACCTCGAAGAAAAAACCGGTGAGGATGATGCTAATGGATCT
CCATCTTCTGCGCGCGGAGTTAGGAAAGCCGCTGTGGTGACAACGATGCA
GGTGGCATTATATTGCGAAAGGAAAGGCGGTCGTGAAGACGTGTTGGGAA
CGCTGGATGCGCTGTCCCAAAACGCGGACGTAACGAGTCCCGGCGGTTTG
TCCGTCCTTGTTAACGAGGTGTGCCTGACGCTGCTCCGCGCGGAGAAGGA
CTGGGTTGGTACAACCGGGGGGGTCAAGGAGTACACGCCGGAAGGTGTGC
CTGACGCTGCTCCGCGCGGAGAAGGACTGGGTTGGTACAACCGGGGGGGT
CAAGGAGTACACGCCGGAAGGCCGTTCGAGCCGTGACGGAAAACGCGACG
AAAACACTAGCCCCAAAGCTAGGGCCAAACGTGACTTCAACCGGGCTGTC
ACGCGTGAGCGATCGAAGTGGGAGCGAGAGACGGTGTCCAATACGCCCGA
GCGCGGATTTAGCACCAGCCGAGCGCCGGGATGGAGGGGCTCTGAAGGTA
CTCCCGCGGGCACATACGCGGTAGCAACGTTGATGGTCGCGTGGGCCGGC
TTGAGAAGCACCCCGCCACAGCCTGCCGTACGAACGGGCAGCTCATGGTG
GTGGCAGGATGGCAAGAAAGACAGCGACGGTAGCAAACGAGGGTTCAGTG
TCGAAAACAGGCCGTTCGAGCCGTGACGGAAAACGCGACGAAAACACTAG
CCCCAAAGCTAGGGCCAAACGTGACTTCAACCGGGCTGTCACGCGTGAGC
GATCGAAGTGGGAGCGAGAGACGGTGTCCAATACGCCCGAGCGCGGATTT
AGCACCAGCCGAGCGCCGGGATGGAGGGGCTCTGAAGGTACTCCCGCGGG
CACATACGCGGTAGCAACGTTGATGGTCGCGTGGGCCGGCTTGAGAAGCA
CCCCGCCACAGCCTGCCGTACGAACGGGCAGCTCATGGTGGTGGCAGGAT
GGCAAGAAAGACAGCGACGGTAGCAAACGAGGGTTCAGTGTCGAAAACAG
ACAATCTGCTGTGAACTTTCTAGAATGGTTGGGTGACGAGGCCGCAGAAG
GGCGAGGAGAAAACGTTTTAGATCTGGAGGTGCTTTGGACTCCTGCTGAT
GTGGATGATTCGCTTGATAGGGACGATCTTTATACCAAGTGGCCGGAACT
CAGAGGCGTGTAAACAATCTGCTGTGAACTTTCTAGAATGGTTGGGTGAC
GAGGCCGCAGAAGGGCGAGGAGAAAACGTTTTAGATCTGGAGGTGCTTTG
GACTCCTGCTGATGTGGATGATTCGCTTGATAGGGACGATCTTTATACCA
AGTGGCCGGAACTCAGAGGCGTGTAA
back to top