mRNA_H-paniculata_contig20422.5294.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20422.5294.1
Unique NamemRNA_H-paniculata_contig20422.5294.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20422.5294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20422contigH-paniculata_contig20422:2510..4081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size205
Cds size147
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20422.5294.1prot_H-paniculata_contig20422.5294.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20422 2568..4081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929531.621094-UTR-H-paniculata_contig20422:2509..25671622929531.621094-UTR-H-paniculata_contig20422:2509..2567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20422 2510..2567 -
1691480901.217813-UTR-H-paniculata_contig20422:2509..25671691480901.217813-UTR-H-paniculata_contig20422:2509..2567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20422 2510..2567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929531.6326537-CDS-H-paniculata_contig20422:2567..26391622929531.6326537-CDS-H-paniculata_contig20422:2567..2639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20422 2568..2639 -
1691480901.2261717-CDS-H-paniculata_contig20422:2567..26391691480901.2261717-CDS-H-paniculata_contig20422:2567..2639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20422 2568..2639 -
1622929531.6469088-CDS-H-paniculata_contig20422:4006..40811622929531.6469088-CDS-H-paniculata_contig20422:4006..4081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20422 4007..4081 -
1691480901.2343068-CDS-H-paniculata_contig20422:4006..40811691480901.2343068-CDS-H-paniculata_contig20422:4006..4081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20422 4007..4081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20422.5294.1

>prot_H-paniculata_contig20422.5294.1 ID=prot_H-paniculata_contig20422.5294.1|Name=mRNA_H-paniculata_contig20422.5294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
RHAAEAQQTREGHRVERQSRNNSILVFSRTSVRLSQEGPSQVAVAWPS*
back to top

mRNA from alignment at H-paniculata_contig20422:2510..4081-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20422.5294.1 ID=mRNA_H-paniculata_contig20422.5294.1|Name=mRNA_H-paniculata_contig20422.5294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1572bp|location=Sequence derived from alignment at H-paniculata_contig20422:2510..4081- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACACGCCGCGGAAGCTCAACAAACTCGGGAGGGACACAGGGTGGAACG
TCAATCTCGTAACAACAGTATATTGGTGAGATTCACGGTGTAACTTCACA
ATCAGGATGCAGCCTTAGAAATCGCACAGCACCGTCAGTTCGAAGGGTTA
AAACTCACGGAGCCGCTTGATTGAAAGATCCGACCCATGCGAGGACGAAC
ATTACAAACGCCCCCGTTGAAGTATGTTGGAGTTAGGGCTGAAACATAAT
TTTTACCCGTTCTGAAAGTTCGAAATCGATAAATCGTGCATGGCGCGGGT
ACTAATTATGAAATAACAACTTTTGATCGGAGCATGACTAACCCAACAAG
AATATCGGCAGGACCGCATAGGTCAGGGCCTATATTGTCGCCGCCCTATG
AAGTCCAAAGCTTCGAGCTGACTTCGCTCTGCGAGGTCTACGCTTCTTTA
CGATTGCACTTTGATTGTGAAGTTACACTCTGAATCTCACCAATAACTGC
TTCATTCAGCATGCGCAGTCTCCAGATCTCAACATGAGCAGTTTGAGGTT
CTTTGCACTCTGAAAAGTAGGGCTTGGAGGGAGTGTTACGGTACCATATA
AAACACCAAGGAATCCGAAGCAAAAATCCGTGTTTGATTCGGAGGTCATT
GCAATAAGTTATACCCTTAACGTCGCAGACTACTGGGACGGAGGGAGTAG
GTTTGTTTGTTTTTCTATCATGTTTAGGCGCGGTGTTTTCGAGCTTCGCG
CGTGTAGAGTACCTGCTGCACAAAATCACATCGACGTTTCCGTGCCTGGT
CGGATGCACGTTTCTTTCGCTAACAATAGTCACCGTGTTGGATATGGGTC
ATGTTTATGTAGCAATAGTAATACGACTTGCACCCACGATTTTGATATCG
AATTTCTCAACATACGACTTGACGGCGGTCATTTTGAAAACCAGGAGTTT
GCTCATGTATGTCCGTACCAGGGTTCCCAGACGCAATTTAATAGGGGGAG
TTGATGTTCAGCACTGTGTCATGAATGCGGTTGCTGATGAAAAGGGAGAG
ATCATCCATATCTAGAACCCTCGCGGGCCTTACCTAAAGCACTCACGGAC
TTTCCGGAAAAGTGCAATTTGTATTGAGTTTTTCAACACATGGCGAATGC
CGCACCGTACCCCCAAATAATGAGACATGGAGAAGGTAGGTCAGTGATGA
TAAGTAGTCCAGCTACTCAAAGATGAGGAGCAACGGTATCCCGCCGGTTG
GTATATATTGGGACCACTGATAAGCAGCCATGTGTATTCCCGCCTGATGA
TACTTGGTCGTGGGTTATGTACTCATCCGCGGATCACGCGCGTTCCGTCA
ATGACGATTTGTTAGCCCTCGGTCAAACTTATCTTCTAATCTTCCGTCGT
TTCCGCACCCTGTGCCTTGCCGCGCAACTGTACTGTCGTTAGGTGTTTTC
GCGAACGTCTGTTCGCTTGTCACAGGAGGGCCCAAGTCAAGTCGCCGTAG
CGTGGCCGAGCTAGACATACTGCGTACGAGCCGAGGGTGGATTAACGTAC
CCAGATTTTTGGCGATTTCTGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20422:2510..4081-

>mRNA_H-paniculata_contig20422.5294.1 ID=mRNA_H-paniculata_contig20422.5294.1|Name=mRNA_H-paniculata_contig20422.5294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig20422:2510..4081- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACACGCCGCGGAAGCTCAACAAACTCGGGAGGGACACAGGGTGGAACG
TCAATCTCGTAACAACAGTATATTGAGACACGCCGCGGAAGCTCAACAAA
CTCGGGAGGGACACAGGGTGGAACGTCAATCTCGTAACAACAGTATATTG
GTGTTTTCGCGAACGTCTGTTCGCTTGTCACAGGAGGGCCCAAGTCAAGT
CGCCGTAGCGTGGCCGAGCTAGGTGTTTTCGCGAACGTCTGTTCGCTTGT
CACAGGAGGGCCCAAGTCAAGTCGCCGTAGCGTGGCCGAGCTAG
back to top