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Homology
BLAST of mRNA_H-paniculata_contig20389.5279.1 vs. uniprot
Match: D8LLN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN7_ECTSI) HSP 1 Score: 240 bits (612), Expect = 1.030e-67 Identity = 152/265 (57.36%), Postives = 172/265 (64.91%), Query Frame = 3
Query: 3 IPLRDLVGLDFTPTMEVEVELDPNSQAVVFRSTRSTLYGDVVPSSAAGEEWDTGTDPFPAATSLDNKLEYFRVSFDARLRWAKGDASTEPRRRGGARNGFAGEVARRPRPVA---PRAATATSPPASQAVGDNDDGASAXXXXXAGKTVADENVDEGSPSAKSPQVVDSSGVVKAAAKERELRAERGTVFCDTQVRVQVLLPPPYNSVLPWRLLRALLGKVLSTIVAYVLPRFLELLADDFYGWQSGTRRAAAT----GRTLLGG 776
IPL+D VGLDFTPTMEVEVELD + AVVFRSTRSTLYG+V GEE T+P+P A S +++EYFRV FDARLRW GDAS PRR+ G R GFAG ARRPRP A P A G + X G VA V G ++S V E E TVFCDT+++VQVLLPPPYN++LPWRL+R LLGK+LSTIVAY+LPRFLELLADDFYGWQSGTRRAAAT GRTLLGG
Sbjct: 134 IPLKDFVGLDFTPTMEVEVELDRPAGAVVFRSTRSTLYGNV---GKPGEE--ASTNPWPEAGS--SQVEYFRVGFDARLRWVDGDASLAPRRQRG-RGGFAGTFARRPRPEAEPAPXXXXXXXXXXEDADGGGEAAXXVXDSRGXGGVVAPPAVPAGE--------AEASSVEPPTDGELAADVEPATVFCDTEIKVQVLLPPPYNTLLPWRLVRVLLGKLLSTIVAYILPRFLELLADDFYGWQSGTRRAAATAGETGRTLLGG 382
BLAST of mRNA_H-paniculata_contig20389.5279.1 vs. uniprot
Match: A0A6H5KPE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPE1_9PHAE) HSP 1 Score: 231 bits (590), Expect = 1.880e-63 Identity = 157/268 (58.58%), Postives = 181/268 (67.54%), Query Frame = 3
Query: 3 IPLRDLVGLDFTPTMEVEVELDPNSQAVVFRSTRSTLYGDVVPSSAAGEEWDTGTDPFPAATSLDNKLEYFRVSFDARLRWAKGDASTEPRRRGGARNGFAGEVARRPRPVAPRAATATSPPASQAVGDNDDGASAXXXXXAGKTVADENVDEGSPSAKSPQVVDSSGVVKAAAKER----ELRA--ERGTVFCDTQVRVQVLLPPPYNSVLPWRLLRALLGKVLSTIVAYVLPRFLELLADDFYGWQSGTRRAAAT----GRTLLGG 776
IPL+D VGLDFTPTMEVEVELD + AVVFRSTRSTLYG+V GEE T+P+P A S +++EYFRV FDARL W GDAS PRR+ G R GFAG ARRPRP A A PP++ A XXXXX G P V ++G +A+A E EL A E TVFCDT+++VQVLLPPPYN++LPWRL+RALLGK+LST VA++LPRFLELLADDFYGWQSGTRRAAAT GRTLLGG
Sbjct: 279 IPLKDFVGLDFTPTMEVEVELDRPAGAVVFRSTRSTLYGNV---GKPGEE--ASTNPWPDAGS--SQVEYFRVGFDARLGWVDGDASLTPRRQRG-RGGFAGTFARRPRPEAEPAL----PPSTAAAXXX------XXXXXXXXXXXXXXXXRGDGGVVVPPAV-AAGEAEASAVEPPTDGELAADVEPATVFCDTEIKVQVLLPPPYNTLLPWRLVRALLGKLLSTTVAFILPRFLELLADDFYGWQSGTRRAAATAGETGRTLLGG 527
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1792 |
| Cds size | 1626 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20389.5279.1 >prot_H-paniculata_contig20389.5279.1 ID=prot_H-paniculata_contig20389.5279.1|Name=mRNA_H-paniculata_contig20389.5279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=542bp
MEVEVELDPNSQAVVFRSTRSTLYGDVVPSSAAGEEWDTGTDPFPAATSL DNKLEYFRVSFDARLRWAKGDASTEPRRRGGARNGFAGEVARRPRPVAPR AATATSPPASQAVGDNDDGASASASASAGKTVADENVDEGSPSAKSPQVV DSSGVVKAAAKERELRAERGTVFCDTQVRVQVLLPPPYNSVLPWRLLRAL LGKVLSTIVAYVLPRFLELLADDFYGWQSGTRRAAATGRTLLGGGNKQSS NKTHQKTIKPSASGSPTNITPSTTPFNGFLGGGGGGGDGSSRGVGRDGRI GESGSGELSSEVDRDETTTQAVGAAVGARLRSVDRNVQRLRNIRVPKGWG NAAGETTGAGVGGLEGGGRGGAATAPPLSRPSELGENDGSGSMVNGRSGG GRGGRGGVRLPPTLESTGVASSNTDSAMRRRANLATLDALREWATAARGA GNGIGIISGRREAQEDRDRVGRKDATAGGNDGGGEASAPEYEDDLADFIE DGGKAVGGEEEEAGRSRSGGGRRGRGGSGGGGRGGGPSWWG* back to topmRNA from alignment at H-paniculata_contig20389:551..4566+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig20389.5279.1 ID=mRNA_H-paniculata_contig20389.5279.1|Name=mRNA_H-paniculata_contig20389.5279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4016bp|location=Sequence derived from alignment at H-paniculata_contig20389:551..4566+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AGATACCCCTGAGAGATTTAGTTGGTCTGGACTTCACGCCAACCATGGAA
GTTGAGGTGGAGCTGGACCCCAATTCTCAGGCTGTTGTCTTTCGATCTAC
CCGCTCCACCTTGTACGGTGATGTGGTGCCGAGTAGTGCTGCTGGTGAAG
AATGGGACACAGGTATATCTAGCCGCGATCAATTGCAGGCTGCATGGCCT
CAAGCATGTAGGTATAGATTTGTGGTAATAGCGAGAAACAGGTTAAACCA
GTGGCTTGAGCCCCCCCGCGAGTTAAAAGGTACCCGTTTATAGGTCATAA
TGTCTTTGCCTGGTACATATTTGTTTTCTTAAAACTACGCGGTTGAATTT
CATGAATGATGCCGTAATCGCGTGTTGATTCCCTCGGGAGGCGGTACGTT
CGGAACTTGGTTAAAGGTCCACATCCGATTCGTGTTGAAAATCAACAGAT
TTTCGAGGGTTCCAAAGCAGTGCCCAAAAGCAGATTTGGGTTACCGAAAA
CTTGACTCGCTGGAAGCGTCGCTCTTGGCCCACCGCAGCCGCGCGTCAAA
GCTCACCCGGAAGTACTCGAGTGTGCCAAAAATAGATCCGCGATGGGTTG
CGTCCCGAGGTCTGATATAACCAGTTTTCTATTGTTTAAAAAAAATTATG
CCAAAAACAGATGTCAGAACATAGATTTCAGAGAGCTGCGTCCCGAAAGG
GATAATGCCTCCTGGTACGTCCAGTTATCGACGTTCCAAACTGTCAAGTA
ACCCCCTTGTTTGATCTAGTTTTTGCTTACAAGTGTACATAACTCAAGTT
TAAGGTCGGCTGCATCACCTCAATATGCATACGTACGATGACGTTATCGT
ATGAGTTTAATGGAGCTATGGCAAGTGAGTTGATCTCGTGAAGATGGCTT
GGTGGGCGGGCGAGTTCTTTGTTTTCATTTATATCAGGCGTTCACCTCGG
AGCCATGTCATTTCCATGCGTAGTACACACGCGAGTGATAACAATGATAC
TCCCTCTTGAAGGTTGTAGCCCCATGTCGTGCCTGCCCCCCCCCCCCCCC
ATATCTCCAAATCCTTCCCTCCCGACCCTCTTGCTTGCCCACCACCGCAA
CAATGGCTTCCTTCTTCCCTTGCCTCTGTTCCTTGCTGCTGATGTTGACT
GACTTGAGGAAGGCACTGATCCTTTCCCAGCGGCAACCTCCCTCGACAAT
AAACTCGAGTACTTCCGGGTGAGCTTTGACGCGCGACTACGGTGGGCCAA
GGGCGACGCCTCCACCGAGCCAAGACGGCGAGGGGGCGCGCGCAATGGTT
TTGCTGGAGAGGTCGCGCGGCGGCCGCGACCCGTTGCGCCTCGAGCTGCT
ACTGCTACTTCTCCGCCGGCCTCCCAGGCGGTGGGCGATAACGATGATGG
TGCTAGTGCTAGTGCTAGTGCTAGTGCGGGTAAGACGGTAGCAGATGAGA
ACGTGGACGAAGGTGTGTAGTACTTGGAGTGGAGCTAAGGCTACTGGTCT
TCGTAGTAATTCAAGTAAAGGATATGTGGCGCCCACACACAAAGGGGTCG
CTGTGCTCGCATGTAGGCATAGCAGTGTCCATTGAGATCCGGTTATATTC
AAGTTAGAATGATAGCTAGAGGGTGTTGTACATGGTTGGAAAAACGGATC
CGAGGCGGTGAATATCCACCTTAGCACACCGTACTGTATAACGGGGAATG
CACTGGTATCACGGTTCCCGCGGCCCCATGGGTGTATCAGTGTGTAGGTT
CAGCAGCAGGCGAATTTTTTTTGTTCCCACCCATCCTCTTGCTTGCCAAA
TGCCGATCGTACAAGGGGAATCAGGGTATGGCTGCACCGCGAGAGTACTT
CGATTAACGCATTATTGCAGATCCGAGTGTGGAACGCCACCACAATCGAC
AATCACAATACTACCGTGAAGTTAGAGTCAAGTAGGGACTATTTTGAAAA
GCTCTTCATCACCACATAACATTTTCGATTGTACATCCATGTTTCATCTA
TCGTTCGCTCCACGCACACGTTGACATCAACGTTGATCTTCACCAAGCGT
TGGCACGTCGCGCATAACCAGGGGGAAGAGGTACAGAGGGGAGACGGCTG
TCAATGGTTATGCCACCATCGCTACCAACATCATCACCACCATCGTAATT
TTCCGTATAAAACTGTTTATTTATTCTGCTCCATCTAACTGTGTGTGTGC
ATCTGTGTCTCTCTGTTTCTCTTATGTACCACAACAACTTCAGCAGGGTC
ACCGAGTGCCAAGTCACCCCAAGTGGTGGACTCCAGTGGCGTTGTTAAGG
CGGCGGCGAAAGAAAGGGAGCTCAGGGCGGAGCGCGGTACGGTGTTCTGC
GACACTCAGGTGCGGGTACAGGTCCTCCTCCCCCCTCCCTACAACTCCGT
GCTGCCCTGGCGGCTCCTGAGGGCTTTGCTCGGCAAGGTGCTGTCGACCA
TCGTCGCATACGTGCTCCCGAGGTTCCTCGAGGTAAGGGGGGTCATCGTT
GTTTGTTGGATCAATAAATATTATGGGTAAAGGTGATTTGGATGGCGGTT
TCGTTTTTTTTTTCTGTACTTCTGTATATTTCGTTTTCCATGCGTTTTCG
TGGGGATGTAGTGTAACGCCCATTTCCGATGTCATCGACGCGACCACGGA
TTTGTCGTGGTTGTTATTGTTGGGGGCGCGTCTGTCAGTAAATTTGTATA
CGATAAAGATCTATTCTCTAATCATGTACGGGTTGCTGGCTTCCTTCCCA
CGACGGGAGGATGAACAACCTTGACCTCGCTGTCTGCCTGCTTTGCTTTG
CTCGGCTCCTTTTTTTTCACATGGCATAATGTCTTTGTTACATGACATTT
TTTTCGCATTTAGTTCATTAATTATTTATCTCGTTTTTTTTCTCACCGCA
TGTACCCAAACATACGACACAGCTTCTCGCCGACGACTTCTACGGATGGC
AATCGGGGACGCGCCGCGCCGCGGCAACCGGCCGCACTCTCTTGGGTGGG
GGCAACAAACAATCCTCCAACAAGACACACCAAAAAACGATCAAACCAAG
CGCCAGCGGTAGCCCCACCAACATCACCCCCTCCACCACCCCATTTAACG
GCTTCTTGGGAGGAGGAGGGGGGGGAGGCGATGGCAGCTCGAGGGGGGTA
GGCCGCGATGGCAGAATCGGCGAGAGCGGCAGCGGGGAGCTTAGTTCGGA
AGTCGACCGCGACGAAACTACCACCCAAGCCGTTGGCGCAGCAGTAGGGG
CGCGTCTGAGGAGTGTCGACCGGAACGTGCAACGCTTGCGGAACATTCGG
GTGCCCAAAGGGTGGGGCAATGCCGCAGGCGAAACGACGGGGGCGGGGGT
AGGTGGACTGGAAGGAGGAGGACGCGGAGGGGCTGCGACAGCACCACCAC
TCAGTAGGCCGTCAGAGCTTGGGGAGAACGACGGTAGTGGGTCCATGGTT
AATGGGAGGTCAGGCGGAGGAAGAGGGGGAAGAGGAGGGGTGCGGCTGCC
GCCGACGTTGGAGTCGACAGGGGTAGCGAGTTCCAATACTGACAGCGCCA
TGCGGCGACGTGCTAACCTGGCGACGCTCGACGCGTTGCGCGAGTGGGCG
ACTGCTGCCAGGGGGGCGGGCAACGGTATCGGCATTATTAGTGGGAGGCG
GGAGGCGCAGGAGGATAGAGATCGCGTGGGACGAAAAGATGCCACCGCTG
GGGGTAATGATGGTGGTGGTGAGGCTTCTGCTCCCGAGTACGAAGATGAT
TTGGCAGACTTTATCGAAGATGGAGGGAAAGCTGTTGGAGGGGAAGAGGA
GGAAGCCGGACGATCAAGAAGTGGTGGCGGGCGCCGGGGGCGAGGGGGTA
GCGGTGGCGGCGGTAGGGGTGGCGGACCTAGCTGGTGGGGATGAAAGGGA
TAAACGTGCATGATGTGCCGGTGGTGGTGGTGGTGGTGGTGTAGGGTTAG
TCAATACGGTGTATGCGTGTGTGTCATATCAAGGCGTAGATACTCGTGCG
TGCGCATGCATACCCA back to topCoding sequence (CDS) from alignment at H-paniculata_contig20389:551..4566+ >mRNA_H-paniculata_contig20389.5279.1 ID=mRNA_H-paniculata_contig20389.5279.1|Name=mRNA_H-paniculata_contig20389.5279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3252bp|location=Sequence derived from alignment at H-paniculata_contig20389:551..4566+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGAAGTTGAGGTGGAGCTGGACCCCAATTCTCAGGCTGTTGTCTTTCG ATCTACCCGCTCCACCTTGTACGGTGATGTGGTGCCGAGTAGTGCTGCTG GTGAAGAATGGGACACAGATGGAAGTTGAGGTGGAGCTGGACCCCAATTC TCAGGCTGTTGTCTTTCGATCTACCCGCTCCACCTTGTACGGTGATGTGG TGCCGAGTAGTGCTGCTGGTGAAGAATGGGACACAGGCACTGATCCTTTC CCAGCGGCAACCTCCCTCGACAATAAACTCGAGTACTTCCGGGTGAGCTT TGACGCGCGACTACGGTGGGCCAAGGGCGACGCCTCCACCGAGCCAAGAC GGCGAGGGGGCGCGCGCAATGGTTTTGCTGGAGAGGTCGCGCGGCGGCCG CGACCCGTTGCGCCTCGAGCTGCTACTGCTACTTCTCCGCCGGCCTCCCA GGCGGTGGGCGATAACGATGATGGTGCTAGTGCTAGTGCTAGTGCTAGTG CGGGTAAGACGGTAGCAGATGAGAACGTGGACGAAGGCACTGATCCTTTC CCAGCGGCAACCTCCCTCGACAATAAACTCGAGTACTTCCGGGTGAGCTT TGACGCGCGACTACGGTGGGCCAAGGGCGACGCCTCCACCGAGCCAAGAC GGCGAGGGGGCGCGCGCAATGGTTTTGCTGGAGAGGTCGCGCGGCGGCCG CGACCCGTTGCGCCTCGAGCTGCTACTGCTACTTCTCCGCCGGCCTCCCA GGCGGTGGGCGATAACGATGATGGTGCTAGTGCTAGTGCTAGTGCTAGTG CGGGTAAGACGGTAGCAGATGAGAACGTGGACGAAGGGTCACCGAGTGCC AAGTCACCCCAAGTGGTGGACTCCAGTGGCGTTGTTAAGGCGGCGGCGAA AGAAAGGGAGCTCAGGGCGGAGCGCGGTACGGTGTTCTGCGACACTCAGG TGCGGGTACAGGTCCTCCTCCCCCCTCCCTACAACTCCGTGCTGCCCTGG CGGCTCCTGAGGGCTTTGCTCGGCAAGGTGCTGTCGACCATCGTCGCATA CGTGCTCCCGAGGTTCCTCGAGGGTCACCGAGTGCCAAGTCACCCCAAGT GGTGGACTCCAGTGGCGTTGTTAAGGCGGCGGCGAAAGAAAGGGAGCTCA GGGCGGAGCGCGGTACGGTGTTCTGCGACACTCAGGTGCGGGTACAGGTC CTCCTCCCCCCTCCCTACAACTCCGTGCTGCCCTGGCGGCTCCTGAGGGC TTTGCTCGGCAAGGTGCTGTCGACCATCGTCGCATACGTGCTCCCGAGGT TCCTCGAGCTTCTCGCCGACGACTTCTACGGATGGCAATCGGGGACGCGC CGCGCCGCGGCAACCGGCCGCACTCTCTTGGGTGGGGGCAACAAACAATC CTCCAACAAGACACACCAAAAAACGATCAAACCAAGCGCCAGCGGTAGCC CCACCAACATCACCCCCTCCACCACCCCATTTAACGGCTTCTTGGGAGGA GGAGGGGGGGGAGGCGATGGCAGCTCGAGGGGGGTAGGCCGCGATGGCAG AATCGGCGAGAGCGGCAGCGGGGAGCTTAGTTCGGAAGTCGACCGCGACG AAACTACCACCCAAGCCGTTGGCGCAGCAGTAGGGGCGCGTCTGAGGAGT GTCGACCGGAACGTGCAACGCTTGCGGAACATTCGGGTGCCCAAAGGGTG GGGCAATGCCGCAGGCGAAACGACGGGGGCGGGGGTAGGTGGACTGGAAG GAGGAGGACGCGGAGGGGCTGCGACAGCACCACCACTCAGTAGGCCGTCA GAGCTTGGGGAGAACGACGGTAGTGGGTCCATGGTTAATGGGAGGTCAGG CGGAGGAAGAGGGGGAAGAGGAGGGGTGCGGCTGCCGCCGACGTTGGAGT CGACAGGGGTAGCGAGTTCCAATACTGACAGCGCCATGCGGCGACGTGCT AACCTGGCGACGCTCGACGCGTTGCGCGAGTGGGCGACTGCTGCCAGGGG GGCGGGCAACGGTATCGGCATTATTAGTGGGAGGCGGGAGGCGCAGGAGG ATAGAGATCGCGTGGGACGAAAAGATGCCACCGCTGGGGGTAATGATGGT GGTGGTGAGGCTTCTGCTCCCGAGTACGAAGATGATTTGGCAGACTTTAT CGAAGATGGAGGGAAAGCTGTTGGAGGGGAAGAGGAGGAAGCCGGACGAT CAAGAAGTGGTGGCGGGCGCCGGGGGCGAGGGGGTAGCGGTGGCGGCGGT AGGGGTGGCGGACCTAGCTGGTGGGGATGACTTCTCGCCGACGACTTCTA CGGATGGCAATCGGGGACGCGCCGCGCCGCGGCAACCGGCCGCACTCTCT TGGGTGGGGGCAACAAACAATCCTCCAACAAGACACACCAAAAAACGATC AAACCAAGCGCCAGCGGTAGCCCCACCAACATCACCCCCTCCACCACCCC ATTTAACGGCTTCTTGGGAGGAGGAGGGGGGGGAGGCGATGGCAGCTCGA GGGGGGTAGGCCGCGATGGCAGAATCGGCGAGAGCGGCAGCGGGGAGCTT AGTTCGGAAGTCGACCGCGACGAAACTACCACCCAAGCCGTTGGCGCAGC AGTAGGGGCGCGTCTGAGGAGTGTCGACCGGAACGTGCAACGCTTGCGGA ACATTCGGGTGCCCAAAGGGTGGGGCAATGCCGCAGGCGAAACGACGGGG GCGGGGGTAGGTGGACTGGAAGGAGGAGGACGCGGAGGGGCTGCGACAGC ACCACCACTCAGTAGGCCGTCAGAGCTTGGGGAGAACGACGGTAGTGGGT CCATGGTTAATGGGAGGTCAGGCGGAGGAAGAGGGGGAAGAGGAGGGGTG CGGCTGCCGCCGACGTTGGAGTCGACAGGGGTAGCGAGTTCCAATACTGA CAGCGCCATGCGGCGACGTGCTAACCTGGCGACGCTCGACGCGTTGCGCG AGTGGGCGACTGCTGCCAGGGGGGCGGGCAACGGTATCGGCATTATTAGT GGGAGGCGGGAGGCGCAGGAGGATAGAGATCGCGTGGGACGAAAAGATGC CACCGCTGGGGGTAATGATGGTGGTGGTGAGGCTTCTGCTCCCGAGTACG AAGATGATTTGGCAGACTTTATCGAAGATGGAGGGAAAGCTGTTGGAGGG GAAGAGGAGGAAGCCGGACGATCAAGAAGTGGTGGCGGGCGCCGGGGGCG AGGGGGTAGCGGTGGCGGCGGTAGGGGTGGCGGACCTAGCTGGTGGGGAT GA back to top
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