mRNA_H-paniculata_contig20385.5278.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20385.5278.1
Unique NamemRNA_H-paniculata_contig20385.5278.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20385.5278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20385contigH-paniculata_contig20385:441..1736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929529.5573401-CDS-H-paniculata_contig20385:440..6021622929529.5573401-CDS-H-paniculata_contig20385:440..602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20385 441..602 -
1691480900.283678-CDS-H-paniculata_contig20385:440..6021691480900.283678-CDS-H-paniculata_contig20385:440..602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20385 441..602 -
1622929529.57757-CDS-H-paniculata_contig20385:1682..17361622929529.57757-CDS-H-paniculata_contig20385:1682..1736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20385 1683..1736 -
1691480900.2921247-CDS-H-paniculata_contig20385:1682..17361691480900.2921247-CDS-H-paniculata_contig20385:1682..1736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20385 1683..1736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20385.5278.1prot_H-paniculata_contig20385.5278.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20385 441..1736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20385.5278.1

>prot_H-paniculata_contig20385.5278.1 ID=prot_H-paniculata_contig20385.5278.1|Name=mRNA_H-paniculata_contig20385.5278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
REWHVDVPGRPMIPIELKVVASWKILGRGNSFDAIGQPLPKVGSIHFASV
SLKICFMSGLHPLPGMPSQPR*
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mRNA from alignment at H-paniculata_contig20385:441..1736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20385.5278.1 ID=mRNA_H-paniculata_contig20385.5278.1|Name=mRNA_H-paniculata_contig20385.5278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1296bp|location=Sequence derived from alignment at H-paniculata_contig20385:441..1736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGAGTGGCACGTTGATGTCCCCGGTCGCCCAATGATTCCCATAGAGCT
GAAGGTAAGCTGCACAACAGGCGATGTCGCAACCAGCGTTTCACGCTTGT
GCTTAATCATGCGCCTGAATAGGTAATGACTTGTGTTGTACGTGGCAGCC
AATTTCCCTCAGTTTGCTGTTGTATTGAAATGCTGTCTCCTTCTTGGTGT
CTTTCACCATACAGTGCTGCCTCAGTTGTGCTTGACTGTGCAGACGGTAA
GATCTATGTCTGTCACTGTGCATACAGAAGTCGTCCTCCAATTTACAGTT
CAGTAGAACTATGATGATGCGAAGCTAACTTGTGTTGTACATTACCGTAA
TGTCTGGCCTCATCCCCGTGCAGTACAACCCGTACTGTCCTCGAACATAC
CGTGGTACAGGAAGTAGGACCCTGCGAAGCTGTAGTACATTGGATAATAT
GACGGTGATGACTAATAAAAATAATGTTAATTTTAACGAGAATTTCGTCA
TTTTCCCACCAAAGGCTGCCGAATCAGCCCGGGTGTGGGGGATACAAATG
AAGCACTGTATCGTCTCGACAACATGCCGTTGAAAAAAATTAAATTGGGC
AATATTCAGTTATCCGAAAAGTATAAAGTACTCGTTAATTAAAAAATATA
TTTATTAGTGGCCATCGCAAATACTGTATTGTCTCATTTTTCGTGCCGGT
AAGGTGTGCTGCGTACTCCTGTCGAGAATCGTTGTCTCGTCATTTGCTTT
GCTGGTATGTTCGATGGGTTACGCTGTTCAATTTCCCTCTTCTTGTGGTC
CTTGTCTCTCACGAGGTCACATTGTCAGAGAGTAAATTACGAATTGTACA
CCGCGAAAGAAAATGCCAGGATGACATTTGCAGTTGATCGCTTCCGTAGG
GGTGTCTTCGACCCATATAACAATGCTACCTTGCCTTGCTGAGGGCGATT
GGTCTTCGATAATCCGAGGTGCGTCGTTGCAAGTATTCGTTTTCAGCGAG
GCCATCGCACTGGGAACATGAGCGTCGTCAATCGATTTTCTCCTTGATAA
TATTTTACTATCCCAGCCGCCGTCAGTATATGGCCAAGTGCTTCATGCGA
TTCCGTCACCCCTTCCGTTGCGACTGTAATATAGGTTGTGGCGAGCTGGA
AGATTCTGGGGAGAGGGAATAGCTTCGATGCTATCGGCCAGCCACTGCCC
AAAGTGGGTTCCATACATTTTGCAAGCGTTTCGCTGAAGATCTGCTTCAT
GAGTGGGTTACACCCCCTACCGGGTATGCCCTCTCAGCCACGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20385:441..1736-

>mRNA_H-paniculata_contig20385.5278.1 ID=mRNA_H-paniculata_contig20385.5278.1|Name=mRNA_H-paniculata_contig20385.5278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig20385:441..1736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGAGTGGCACGTTGATGTCCCCGGTCGCCCAATGATTCCCATAGAGCT
GAAGAGAGAGTGGCACGTTGATGTCCCCGGTCGCCCAATGATTCCCATAG
AGCTGAAGGTTGTGGCGAGCTGGAAGATTCTGGGGAGAGGGAATAGCTTC
GATGCTATCGGCCAGCCACTGCCCAAAGTGGGTTCCATACATTTTGCAAG
CGTTTCGCTGAAGATCTGCTTCATGAGTGGGTTACACCCCCTACCGGGTA
TGCCCTCTCAGCCACGATGAGTTGTGGCGAGCTGGAAGATTCTGGGGAGA
GGGAATAGCTTCGATGCTATCGGCCAGCCACTGCCCAAAGTGGGTTCCAT
ACATTTTGCAAGCGTTTCGCTGAAGATCTGCTTCATGAGTGGGTTACACC
CCCTACCGGGTATGCCCTCTCAGCCACGATGA
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