mRNA_H-paniculata_contig20351.5269.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20351.5269.1
Unique NamemRNA_H-paniculata_contig20351.5269.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20351.5269.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.120e-23
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 TGDYHDAMTDKIFVDWLEHRLKPAFKEMFPNKKMILVLDNASYHHGYDPEVGVP 162
            TGDYHDAMTDK+F++WLE RL PAFK  + NKKMILVLDNASYHHGYD EVGVP
Sbjct:  365 TGDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVP 418
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BLAST of mRNA_H-paniculata_contig20351.5269.1 vs. uniprot
Match: A0A6H5K9W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.140e-20
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 TGDYHDAMTDKIFVDWLEHRLKPAFKEMFPNKKMILVLDNASYHHGYDPEVGVP 162
            TGDYH+AMTD +F+ WL+HRL PAF   F NKKM LVLDNASYHH +D EV VP
Sbjct:   17 TGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVP 70
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BLAST of mRNA_H-paniculata_contig20351.5269.1 vs. uniprot
Match: A0A6H5K987_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K987_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.260e-20
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 TGDYHDAMTDKIFVDWLEHRLKPAFKEMFPNKKMILVLDNASYHHGYDPEVGVP 162
            TGDYH+AMTD +F+ WL+HRL PAF   F NKKM LVLDNASYHH +D EV VP
Sbjct:  117 TGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVP 170
[Close]
BLAST of mRNA_H-paniculata_contig20351.5269.1 vs. uniprot
Match: A0A6H5K2A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.170e-19
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 TGDYHDAMTDKIFVDWLEHRLKPAFKEMFPNKKMILVLDNASYHHGYDPEVGVP 162
            TGDYH+AMTD +F+ WL+HRL PAF   F NKKM LVLDNASYHH +D EV VP
Sbjct:   71 TGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVP 124
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BLAST of mRNA_H-paniculata_contig20351.5269.1 vs. uniprot
Match: A0A6H5JRA8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA8_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.290e-19
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 TGDYHDAMTDKIFVDWLEHRLKPAFKEMFPNKKMILVLDNASYHHGYDPEVGVP 162
            TGDYH+AMTD +F+ WL+HRL PAF   F NKKM LVL+NASYHH +D EV VP
Sbjct:   93 TGDYHNAMTDGMFMQWLKHRLTPAFDPQFKNKKMFLVLNNASYHHCFDEEVKVP 146
[Close]
BLAST of mRNA_H-paniculata_contig20351.5269.1 vs. uniprot
Match: A0A6H5KEG4_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.380e-19
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    4 GDYHDAMTDKIFVDWLEHRLKPAFKEM--FPNKKMILVLDNASYHHGYDPEVGVP 162
            GDYH AMTD +F++WLEHRL PA+  +  F  K+MILVLDNASYHHG+D EV VP
Sbjct:   18 GDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVP 72
[Close]
BLAST of mRNA_H-paniculata_contig20351.5269.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.610e-19
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 TGDYHDAMTDKIFVDWLEHRLKPAFKEMFPNKKMILVLDNASYHHGYDPEVGVP 162
            TGDYH+AMTD +F+ WL+HRL PAF   F NKKM LVLDNASYHH +D EV VP
Sbjct:  210 TGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVP 263
[Close]
BLAST of mRNA_H-paniculata_contig20351.5269.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 7.960e-19
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 TGDYHDAMTDKIFVDWLEHRLKPAFKEMFPNKKMILVLDNASYHHGYDPEVGVP 162
            TGDYH+AMTD +F+ WL+HRL PAF   F NKKM LVLDNASYHH +D EV VP
Sbjct:  292 TGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVP 345
[Close]
BLAST of mRNA_H-paniculata_contig20351.5269.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.060e-19
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 TGDYHDAMTDKIFVDWLEHRLKPAFKEMFPNKKMILVLDNASYHHGYDPEVGVP 162
            TGDYH+AMTD +F+ WL+HRL PAF   F NKKM LVLDNASYHH +D EV VP
Sbjct:  248 TGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVP 301
[Close]
BLAST of mRNA_H-paniculata_contig20351.5269.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.420e-19
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 TGDYHDAMTDKIFVDWLEHRLKPAFKEMFPNKKMILVLDNASYHHGYDPEVGVP 162
            TGDYH+AMTD +F+ WL+HRL PAF   F NKKM LVLDNASYHH +D EV VP
Sbjct:  369 TGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVP 422
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20351.5269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI1.120e-2381.48Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5K9W3_9PHAE1.140e-2070.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K987_9PHAE3.260e-2070.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2A0_9PHAE1.170e-1970.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA8_9PHAE6.290e-1968.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KEG4_9PHAE6.380e-1967.27DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LE74_9PHAE7.610e-1970.37Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP14_9PHAE7.960e-1970.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN2_9PHAE8.060e-1970.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX2_9PHAE8.420e-1970.37Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20351contigH-paniculata_contig20351:602..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929528.6539795-CDS-H-paniculata_contig20351:601..7421622929528.6539795-CDS-H-paniculata_contig20351:601..742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20351 602..742 -
1691480899.914335-CDS-H-paniculata_contig20351:601..7421691480899.914335-CDS-H-paniculata_contig20351:601..742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20351 602..742 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929528.6794705-UTR-H-paniculata_contig20351:742..7631622929528.6794705-UTR-H-paniculata_contig20351:742..763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20351 743..763 -
1691480899.9293451-UTR-H-paniculata_contig20351:742..7631691480899.9293451-UTR-H-paniculata_contig20351:742..763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20351 743..763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20351.5269.1prot_H-paniculata_contig20351.5269.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20351 602..742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20351.5269.1

>prot_H-paniculata_contig20351.5269.1 ID=prot_H-paniculata_contig20351.5269.1|Name=mRNA_H-paniculata_contig20351.5269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MTDKIFVDWLEHRLKPAFKEMFPNKKMILVLDNASYHHGYDPEVGVP
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mRNA from alignment at H-paniculata_contig20351:602..763-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20351.5269.1 ID=mRNA_H-paniculata_contig20351.5269.1|Name=mRNA_H-paniculata_contig20351.5269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig20351:602..763- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGGGATTACCATGATGCCATGACTGACAAAATATTTGTGGATTGGCT
GGAGCACCGCCTCAAGCCAGCTTTTAAGGAGATGTTCCCAAACAAAAAAA
TGATTCTTGTTCTGGACAACGCGTCATATCACCATGGGTACGACCCCGAA
GTTGGGGTGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig20351:602..763-

>mRNA_H-paniculata_contig20351.5269.1 ID=mRNA_H-paniculata_contig20351.5269.1|Name=mRNA_H-paniculata_contig20351.5269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig20351:602..763- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGACAAAATATTTGTGGATTGGCTGGAGCACCGCCTCAAGCCAGC
TTTTAAGGAGATGTTCCCAAACAAAAAAATGATTCTTGTTCTGGACAACG
CGTCATATCACCATGGGTACGACCCCGAAGTTGGGGTGCCAATGACTGAC
AAAATATTTGTGGATTGGCTGGAGCACCGCCTCAAGCCAGCTTTTAAGGA
GATGTTCCCAAACAAAAAAATGATTCTTGTTCTGGACAACGCGTCATATC
ACCATGGGTACGACCCCGAAGTTGGGGTGCCA
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