mRNA_H-paniculata_contig20343.5267.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20343.5267.1
Unique NamemRNA_H-paniculata_contig20343.5267.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig20343.5267.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.440e-41
Identity = 66/151 (43.71%), Postives = 97/151 (64.24%), Query Frame = 1 
Query:    1 NLTALGEKCRPICVGSTMRRTLEAGVARQHRPKLEEVHLSERQYGLAVSGSAELMGLRAKAHQQLKHCLIALDCTNAFNSVKRAVVLEEVAIHTPGLTPFVAKYYGEKPTDIIFQMDTGERRRVSSDTGIHQGDGLGPALFCMPVGPILRK 453
            +L ALGEKCRP+C+G T RR + AG  R+ +PKLEE+     Q+G+AV+G  E + + A+   Q  H ++  DC+NAFN+ KR  ++ + A   P L  ++A+ Y E P   I+ MD+GERR +   +G+ QGDG+GP LFC  + PI+ K
Sbjct:   71 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 221
[Close]
BLAST of mRNA_H-paniculata_contig20343.5267.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 5.780e-39
Identity = 66/151 (43.71%), Postives = 97/151 (64.24%), Query Frame = 1 
Query:    1 NLTALGEKCRPICVGSTMRRTLEAGVARQHRPKLEEVHLSERQYGLAVSGSAELMGLRAKAHQQLKHCLIALDCTNAFNSVKRAVVLEEVAIHTPGLTPFVAKYYGEKPTDIIFQMDTGERRRVSSDTGIHQGDGLGPALFCMPVGPILRK 453
            +L ALGEKCRP+C+G T RR + AG  R+ +PKLEE+     Q+G+AV+G  E + + A+   Q  H ++  DC+NAFN+ KR  ++ + A   P L  ++A+ Y E P   I+ MD+GERR +   +G+ QGDG+GP LFC  + PI+ K
Sbjct:   70 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLK 220
[Close]
BLAST of mRNA_H-paniculata_contig20343.5267.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 9.070e-39
Identity = 66/151 (43.71%), Postives = 98/151 (64.90%), Query Frame = 1 
Query:    1 NLTALGEKCRPICVGSTMRRTLEAGVARQHRPKLEEVHLSERQYGLAVSGSAELMGLRAKAHQQLKHCLIALDCTNAFNSVKRAVVLEEVAIHTPGLTPFVAKYYGEKPTDIIFQMDTGERRRVSSDTGIHQGDGLGPALFCMPVGPILRK 453
            +L ALGEKCRP+C+G T RR + AG  R+ +PKLEE+     Q+G+AV+G  E + + A+   Q  H ++  DC+NAFN+ KR  ++ + A + P L  ++A+ Y E P   I+ MD+GERR +   +G+ QGDG+GP LFC  + PI+ K
Sbjct:  389 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKNVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 539
[Close]
BLAST of mRNA_H-paniculata_contig20343.5267.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.090e-38
Identity = 65/151 (43.05%), Postives = 98/151 (64.90%), Query Frame = 1 
Query:    1 NLTALGEKCRPICVGSTMRRTLEAGVARQHRPKLEEVHLSERQYGLAVSGSAELMGLRAKAHQQLKHCLIALDCTNAFNSVKRAVVLEEVAIHTPGLTPFVAKYYGEKPTDIIFQMDTGERRRVSSDTGIHQGDGLGPALFCMPVGPILRK 453
            +L ALGEKCRP+C+G T RR + AG  R+ +PKLEE+     Q+G+AV+G  E + + A+   Q  H ++  DC++AFN+ KR V++ + A   P +  ++A+ Y E P   I+ MD+GERR +   +G+ QGDG+GP LFC  + PI+ K
Sbjct:   63 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 213
[Close]
BLAST of mRNA_H-paniculata_contig20343.5267.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.100e-38
Identity = 65/151 (43.05%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:    1 NLTALGEKCRPICVGSTMRRTLEAGVARQHRPKLEEVHLSERQYGLAVSGSAELMGLRAKAHQQLKHCLIALDCTNAFNSVKRAVVLEEVAIHTPGLTPFVAKYYGEKPTDIIFQMDTGERRRVSSDTGIHQGDGLGPALFCMPVGPILRK 453
            +L ALGEKCRP+C+G T RR + AG  R+ +PKLEE+     Q+G+AV+G  E + + A+   Q  H ++  DC+NAFN+ KR  ++ + A   P L  ++A+ Y E P   I+ MD+G RR +    G+ QGDG+GP LFC  + PI+ K
Sbjct:  161 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILK 311
[Close]
BLAST of mRNA_H-paniculata_contig20343.5267.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.050e-38
Identity = 66/151 (43.71%), Postives = 97/151 (64.24%), Query Frame = 1 
Query:    1 NLTALGEKCRPICVGSTMRRTLEAGVARQHRPKLEEVHLSERQYGLAVSGSAELMGLRAKAHQQLKHCLIALDCTNAFNSVKRAVVLEEVAIHTPGLTPFVAKYYGEKPTDIIFQMDTGERRRVSSDTGIHQGDGLGPALFCMPVGPILRK 453
            +L ALGEKCRP+C+G T RR + AG  R+ +PKLEE+     Q+G+AV+G  E + + A+   Q  H ++  DC+NAFN+ KR  ++ + A   P L  ++A+ Y E P   I+ MD+GERR +   +G+ QGDG+GP LFC  + PI+ K
Sbjct:  460 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 610
[Close]
BLAST of mRNA_H-paniculata_contig20343.5267.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.190e-38
Identity = 66/151 (43.71%), Postives = 97/151 (64.24%), Query Frame = 1 
Query:    1 NLTALGEKCRPICVGSTMRRTLEAGVARQHRPKLEEVHLSERQYGLAVSGSAELMGLRAKAHQQLKHCLIALDCTNAFNSVKRAVVLEEVAIHTPGLTPFVAKYYGEKPTDIIFQMDTGERRRVSSDTGIHQGDGLGPALFCMPVGPILRK 453
            +L ALGEKCRP+C+G T RR + AG  R+ +PKLEE+     Q+G+AV+G  E + + A+   Q  H ++  DC+NAFN+ KR  ++ + A   P L  ++A+ Y E P   I+ MD+GERR +   +G+ QGDG+GP LFC  + PI+ K
Sbjct:  439 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 589
[Close]
BLAST of mRNA_H-paniculata_contig20343.5267.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.490e-38
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = 1 
Query:    1 NLTALGEKCRPICVGSTMRRTLEAGVARQHRPKLEEVHLSERQYGLAVSGSAELMGLRAKAHQQLKHCLIALDCTNAFNSVKRAVVLEEVAIHTPGLTPFVAKYYGEKPTDIIFQMDTGERRRVSSDTGIHQGDGLGPALFCMPVGPILRK 453
            +L ALGEKCRP+C+G T RR + AG  R+ +PKLEE+     Q+G+AV+G  E + + A+   Q  H ++  DC+NAFN+ KR  ++ + +   P L  ++A+ Y E P   I+ MD+GERR +   +G+ QGDG+GP LFC  + PI+ K
Sbjct:  438 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 588
[Close]
BLAST of mRNA_H-paniculata_contig20343.5267.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 9.230e-38
Identity = 65/151 (43.05%), Postives = 96/151 (63.58%), Query Frame = 1 
Query:    1 NLTALGEKCRPICVGSTMRRTLEAGVARQHRPKLEEVHLSERQYGLAVSGSAELMGLRAKAHQQLKHCLIALDCTNAFNSVKRAVVLEEVAIHTPGLTPFVAKYYGEKPTDIIFQMDTGERRRVSSDTGIHQGDGLGPALFCMPVGPILRK 453
            +L ALGEKCRP+C+G T RR + AG  R+ +PKLEE+     Q+G+AV+G  E + + A+   Q  H ++  DC+NAFN+ KR  ++ + A   P L  ++A+ Y E P   I+ MD+GE R +   +G+ QGDG+GP LFC  + PI+ K
Sbjct:  446 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLFCFILVPIVLK 596
[Close]
BLAST of mRNA_H-paniculata_contig20343.5267.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.540e-37
Identity = 65/151 (43.05%), Postives = 94/151 (62.25%), Query Frame = 1 
Query:    1 NLTALGEKCRPICVGSTMRRTLEAGVARQHRPKLEEVHLSERQYGLAVSGSAELMGLRAKAHQQLKHCLIALDCTNAFNSVKRAVVLEEVAIHTPGLTPFVAKYYGEKPTDIIFQMDTGERRRVSSDTGIHQGDGLGPALFCMPVGPILRK 453
            +L ALGEKCRP+C+G T RR + AG  R+ +PKLEE+     Q+G+A +G  E + + A+   Q  H ++  DC+NAFN  KR   + + A   P L  ++A+ Y E P   I+ MD+GERR +   +G+ QGDG+GP LFC  + PI+ K
Sbjct:  447 SLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAAAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNMGKRTATMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLK 597
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20343.5267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y4_9PHAE1.440e-4143.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE5.780e-3943.71Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KAK8_9PHAE9.070e-3943.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0V7_9PHAE1.090e-3843.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE1.100e-3843.05Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JI32_9PHAE2.050e-3843.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE2.190e-3843.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE4.490e-3843.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA96_9PHAE9.230e-3843.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K195_9PHAE3.540e-3743.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20343contigH-paniculata_contig20343:105..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score70.1
Seed ortholog evalue1e-09
Seed eggNOG ortholog400682.PAC_15701845
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39QPF@33154,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929528.528467-CDS-H-paniculata_contig20343:104..5631622929528.528467-CDS-H-paniculata_contig20343:104..563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20343 105..563 -
1691480899.8544846-CDS-H-paniculata_contig20343:104..5631691480899.8544846-CDS-H-paniculata_contig20343:104..563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20343 105..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20343.5267.1prot_H-paniculata_contig20343.5267.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20343 105..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20343.5267.1

>prot_H-paniculata_contig20343.5267.1 ID=prot_H-paniculata_contig20343.5267.1|Name=mRNA_H-paniculata_contig20343.5267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
NLTALGEKCRPICVGSTMRRTLEAGVARQHRPKLEEVHLSERQYGLAVSG
SAELMGLRAKAHQQLKHCLIALDCTNAFNSVKRAVVLEEVAIHTPGLTPF
VAKYYGEKPTDIIFQMDTGERRRVSSDTGIHQGDGLGPALFCMPVGPILR
KC*
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mRNA from alignment at H-paniculata_contig20343:105..563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20343.5267.1 ID=mRNA_H-paniculata_contig20343.5267.1|Name=mRNA_H-paniculata_contig20343.5267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=459bp|location=Sequence derived from alignment at H-paniculata_contig20343:105..563- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCTCACGGCTCTCGGTGAGAAGTGCCGCCCGATCTGCGTGGGATCTAC
GATGAGGCGTACTTTGGAAGCAGGGGTGGCCAGGCAGCACAGGCCGAAAC
TGGAGGAGGTACACTTGTCGGAGCGGCAGTACGGGTTAGCGGTCTCGGGC
AGCGCGGAGCTCATGGGCCTCCGCGCAAAAGCACACCAGCAATTGAAACA
TTGTCTTATCGCCCTCGACTGTACAAATGCCTTCAACTCCGTCAAGCGGG
CGGTGGTCTTGGAAGAAGTGGCAATCCACACCCCAGGTCTGACACCTTTC
GTAGCCAAATACTATGGGGAGAAGCCGACAGACATCATTTTCCAGATGGA
CACCGGTGAACGCAGGAGAGTCTCTTCGGACACGGGAATCCACCAGGGCG
ACGGACTGGGACCCGCCCTCTTCTGCATGCCTGTGGGACCGATCTTGCGC
AAGTGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20343:105..563-

>mRNA_H-paniculata_contig20343.5267.1 ID=mRNA_H-paniculata_contig20343.5267.1|Name=mRNA_H-paniculata_contig20343.5267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig20343:105..563- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCTCACGGCTCTCGGTGAGAAGTGCCGCCCGATCTGCGTGGGATCTAC
GATGAGGCGTACTTTGGAAGCAGGGGTGGCCAGGCAGCACAGGCCGAAAC
TGGAGGAGGTACACTTGTCGGAGCGGCAGTACGGGTTAGCGGTCTCGGGC
AGCGCGGAGCTCATGGGCCTCCGCGCAAAAGCACACCAGCAATTGAAACA
TTGTCTTATCGCCCTCGACTGTACAAATGCCTTCAACTCCGTCAAGCGGG
CGGTGGTCTTGGAAGAAGTGGCAATCCACACCCCAGGTCTGACACCTTTC
GTAGCCAAATACTATGGGGAGAAGCCGACAGACATCATTTTCCAGATGGA
CACCGGTGAACGCAGGAGAGTCTCTTCGGACACGGGAATCCACCAGGGCG
ACGGACTGGGACCCGCCCTCTTCTGCATGCCTGTGGGACCGATCTTGCGC
AAGTGTTGAAACCTCACGGCTCTCGGTGAGAAGTGCCGCCCGATCTGCGT
GGGATCTACGATGAGGCGTACTTTGGAAGCAGGGGTGGCCAGGCAGCACA
GGCCGAAACTGGAGGAGGTACACTTGTCGGAGCGGCAGTACGGGTTAGCG
GTCTCGGGCAGCGCGGAGCTCATGGGCCTCCGCGCAAAAGCACACCAGCA
ATTGAAACATTGTCTTATCGCCCTCGACTGTACAAATGCCTTCAACTCCG
TCAAGCGGGCGGTGGTCTTGGAAGAAGTGGCAATCCACACCCCAGGTCTG
ACACCTTTCGTAGCCAAATACTATGGGGAGAAGCCGACAGACATCATTTT
CCAGATGGACACCGGTGAACGCAGGAGAGTCTCTTCGGACACGGGAATCC
ACCAGGGCGACGGACTGGGACCCGCCCTCTTCTGCATGCCTGTGGGACCG
ATCTTGCGCAAGTGTTGA
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