mRNA_H-paniculata_contig20325.5263.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20325.5263.1
Unique NamemRNA_H-paniculata_contig20325.5263.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20325.5263.1 vs. uniprot
Match: D7FIB4_ECTSI (Hemolysin-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIB4_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.330e-25
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 1
Query:   28 QMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFRDEEHYINVNE 195
            +MRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFR+EEHYINVNE
Sbjct:  425 EMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFREEEHYINVNE 480          
BLAST of mRNA_H-paniculata_contig20325.5263.1 vs. uniprot
Match: A0A6H5JI81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI81_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.950e-25
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1
Query:   25 FQMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFRDEEHYINVNE 195
            + MRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFR+EEHYINVNE
Sbjct:  585 WNMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFREEEHYINVNE 641          
BLAST of mRNA_H-paniculata_contig20325.5263.1 vs. uniprot
Match: A0A7S1TRQ1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRQ1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 9.910e-18
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 1
Query:   28 QMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFRDEEHYINVNEVS 201
            +MRRRRLHMA+VVDEYGGTAG+VTLEDILEEVVGEIYDE+++ + RDEE  I V + S
Sbjct:  440 EMRRRRLHMAVVVDEYGGTAGLVTLEDILEEVVGEIYDEEDEQESRDEEDMITVEDES 497          
BLAST of mRNA_H-paniculata_contig20325.5263.1 vs. uniprot
Match: A0A836CE63_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE63_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.420e-17
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 1
Query:   28 QMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFRDEEHYINVN 192
            +MR+RRLHMAIVVDEYGGTAG+VTLEDI+EEVVGEIYDE EDDD+  EE+YI  N
Sbjct:  332 EMRKRRLHMAIVVDEYGGTAGIVTLEDIIEEVVGEIYDE-EDDDYTVEENYIIAN 385          
BLAST of mRNA_H-paniculata_contig20325.5263.1 vs. uniprot
Match: A0A7S2WA30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WA30_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.150e-16
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    7 VCARVRFQMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKED-DDFRDEEHYINVNEVS 201
            V  RV  +MRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDE +D ++  DE++ + V E S
Sbjct:  173 VVQRVLEEMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEGDDMEEITDEDNIMMVGEGS 238          
BLAST of mRNA_H-paniculata_contig20325.5263.1 vs. uniprot
Match: A0A7S0VP60_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VP60_9CRYP)

HSP 1 Score: 76.6 bits (187), Expect = 1.460e-16
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1
Query:   28 QMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFRDEEHYI 183
            +MRRRR+HMAIVVDEYGGTAG+VTLEDILEEV+GEIYDE + D+   EE  I
Sbjct:    7 EMRRRRIHMAIVVDEYGGTAGIVTLEDILEEVIGEIYDEDDIDELVKEESSI 58          
BLAST of mRNA_H-paniculata_contig20325.5263.1 vs. uniprot
Match: A0A7R9U4U4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4U4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.240e-16
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1
Query:   28 QMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFRDEEHYI 183
            +MRRRRLHMAIVVDEYGGTAG+VTLEDILEEVVGEIYDE+++ + R+EE  I
Sbjct:  447 EMRRRRLHMAIVVDEYGGTAGLVTLEDILEEVVGEIYDEEDEQESREEEDMI 498          
BLAST of mRNA_H-paniculata_contig20325.5263.1 vs. uniprot
Match: A0A0G4GVS8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GVS8_VITBC)

HSP 1 Score: 79.0 bits (193), Expect = 1.430e-15
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   28 QMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFRDEEHYINVNEV 198
            +MRR R HM IVVDE+GGTAG+VTLEDILEEVVG+IYDE +++DFR+E+  I  NE 
Sbjct:  352 EMRRHRFHMGIVVDEHGGTAGIVTLEDILEEVVGDIYDEDDEEDFREEDDMIIHNEA 408          
BLAST of mRNA_H-paniculata_contig20325.5263.1 vs. uniprot
Match: A0A7S2H8S4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H8S4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.800e-15
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   28 QMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKEDDDFRDEEHYINVNE 195
            +MRRRR+HMA++VDEYGGT G+V+LEDI+EEVVGEIYDE +++DF   E  I + E
Sbjct:   75 EMRRRRVHMAVIVDEYGGTEGLVSLEDIVEEVVGEIYDEDDEEDFEFSEDSITLQE 130          
BLAST of mRNA_H-paniculata_contig20325.5263.1 vs. uniprot
Match: A0A7S2FGG7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FGG7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.130e-15
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1
Query:    7 VCARVRFQMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDE 144
            V  RV  +MR+RRLHMAIVVDEYGGTAG+VTLEDILEEVVGEIYDE
Sbjct:   29 VVQRVLEEMRKRRLHMAIVVDEYGGTAGLVTLEDILEEVVGEIYDE 74          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20325.5263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIB4_ECTSI1.330e-2596.43Hemolysin-related protein n=1 Tax=Ectocarpus silic... [more]
A0A6H5JI81_9PHAE1.950e-2594.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1TRQ1_9STRA9.910e-1874.14Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A836CE63_9STRA2.420e-1780.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WA30_9STRA1.150e-1671.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0VP60_9CRYP1.460e-1675.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7R9U4U4_9STRA2.240e-1678.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4GVS8_VITBC1.430e-1568.42Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S2H8S4_9STRA2.800e-1564.29Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2FGG7_9STRA3.130e-1584.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20325contigH-paniculata_contig20325:311..514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2e-21
Seed eggNOG ortholog2880.D7FIB4
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.magnesium ion homeostasis
EggNOG OGsCOG1253@1,KOG2118@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929528.0484006-CDS-H-paniculata_contig20325:310..5141622929528.0484006-CDS-H-paniculata_contig20325:310..514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20325 311..514 -
1691480899.6213841-CDS-H-paniculata_contig20325:310..5141691480899.6213841-CDS-H-paniculata_contig20325:310..514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20325 311..514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20325.5263.1prot_H-paniculata_contig20325.5263.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20325 311..514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20325.5263.1

>prot_H-paniculata_contig20325.5263.1 ID=prot_H-paniculata_contig20325.5263.1|Name=mRNA_H-paniculata_contig20325.5263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MCVCARVRFQMRRRRLHMAIVVDEYGGTAGVVTLEDILEEVVGEIYDEKE
DDDFRDEEHYINVNEVSR
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mRNA from alignment at H-paniculata_contig20325:311..514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20325.5263.1 ID=mRNA_H-paniculata_contig20325.5263.1|Name=mRNA_H-paniculata_contig20325.5263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig20325:311..514- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGTATGTGCACGTGTGCGTTTCCAGATGCGACGGAGGCGGTTGCA CATGGCTATCGTGGTGGATGAGTACGGTGGCACGGCGGGCGTTGTCACCC TGGAGGATATTCTCGAGGAGGTTGTGGGGGAAATATATGATGAGAAAGAA GATGATGACTTCCGAGATGAGGAACATTATATCAACGTTAACGAGGTGAG TCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig20325:311..514-

>mRNA_H-paniculata_contig20325.5263.1 ID=mRNA_H-paniculata_contig20325.5263.1|Name=mRNA_H-paniculata_contig20325.5263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig20325:311..514- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGTATGTGCACGTGTGCGTTTCCAGATGCGACGGAGGCGGTTGCA
CATGGCTATCGTGGTGGATGAGTACGGTGGCACGGCGGGCGTTGTCACCC
TGGAGGATATTCTCGAGGAGGTTGTGGGGGAAATATATGATGAGAAAGAA
GATGATGACTTCCGAGATGAGGAACATTATATCAACGTTAACGAGGTGAG
TCGTATGTGTGTATGTGCACGTGTGCGTTTCCAGATGCGACGGAGGCGGT
TGCACATGGCTATCGTGGTGGATGAGTACGGTGGCACGGCGGGCGTTGTC
ACCCTGGAGGATATTCTCGAGGAGGTTGTGGGGGAAATATATGATGAGAA
AGAAGATGATGACTTCCGAGATGAGGAACATTATATCAACGTTAACGAGG
TGAGTCGT
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