mRNA_H-paniculata_contig2028.5245.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2028.5245.1
Unique NamemRNA_H-paniculata_contig2028.5245.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2028.5245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2028contigH-paniculata_contig2028:19871..20486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size616
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929525.2081587-CDS-H-paniculata_contig2028:19870..203651622929525.2081587-CDS-H-paniculata_contig2028:19870..20365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2028 19871..20365 +
1691480898.364065-CDS-H-paniculata_contig2028:19870..203651691480898.364065-CDS-H-paniculata_contig2028:19870..20365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2028 19871..20365 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929525.2199028-UTR-H-paniculata_contig2028:20365..204861622929525.2199028-UTR-H-paniculata_contig2028:20365..20486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2028 20366..20486 +
1691480898.3724184-UTR-H-paniculata_contig2028:20365..204861691480898.3724184-UTR-H-paniculata_contig2028:20365..20486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2028 20366..20486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2028.5245.1prot_H-paniculata_contig2028.5245.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2028 19871..20365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2028.5245.1

>prot_H-paniculata_contig2028.5245.1 ID=prot_H-paniculata_contig2028.5245.1|Name=mRNA_H-paniculata_contig2028.5245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
PPSSSSRLDSSAANGCLRPILKFARRALLSKFACEACWSTFWARLPLVTL
LLFSSHDKTVASLFSDATSDDVVGIDHSPSSLESLCDRRTVSVHSAVSEL
AKGVAACTRGRCSPDIAYELVTGGTATPNPGTAVETRQGAADVRGCCCCV
GGRRRLLLPVAAIL*
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mRNA from alignment at H-paniculata_contig2028:19871..20486+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2028.5245.1 ID=mRNA_H-paniculata_contig2028.5245.1|Name=mRNA_H-paniculata_contig2028.5245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=616bp|location=Sequence derived from alignment at H-paniculata_contig2028:19871..20486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCCGTCGTCGTCGTCGCGACTGGATTCGAGTGCTGCTAACGGCTGTCT
CCGACCCATACTCAAATTCGCAAGGCGAGCGTTGCTCAGCAAGTTTGCTT
GCGAAGCCTGTTGGAGCACATTTTGGGCACGCTTGCCGCTAGTGACACTA
CTATTGTTCTCATCCCATGATAAGACAGTGGCGTCCTTATTCTCTGATGC
TACCAGTGATGATGTCGTGGGCATAGACCACTCCCCCTCCTCCCTCGAGT
CGCTATGCGATCGCAGAACGGTGTCTGTACACTCAGCAGTAAGTGAACTT
GCCAAGGGAGTAGCGGCTTGCACGCGAGGCCGCTGCTCTCCAGACATCGC
TTATGAATTGGTGACTGGCGGCACTGCAACACCAAACCCAGGGACTGCCG
TAGAGACAAGGCAGGGGGCTGCTGACGTCAGGGGATGCTGCTGTTGTGTT
GGCGGTCGTCGCAGGCTGCTGCTGCCGGTTGCTGCTATCCTGTGAAGCCC
TTCTCCAAAAAATGCCTCGTTGCTCCTCCTGATACACGGTACAACAGCTC
GTTGCGTTGTTGCGATCGTGACACACGTGTTATGATGTTATGATGTTATG
ATTGCCACCATACTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2028:19871..20486+

>mRNA_H-paniculata_contig2028.5245.1 ID=mRNA_H-paniculata_contig2028.5245.1|Name=mRNA_H-paniculata_contig2028.5245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig2028:19871..20486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCCGTCGTCGTCGTCGCGACTGGATTCGAGTGCTGCTAACGGCTGTCT
CCGACCCATACTCAAATTCGCAAGGCGAGCGTTGCTCAGCAAGTTTGCTT
GCGAAGCCTGTTGGAGCACATTTTGGGCACGCTTGCCGCTAGTGACACTA
CTATTGTTCTCATCCCATGATAAGACAGTGGCGTCCTTATTCTCTGATGC
TACCAGTGATGATGTCGTGGGCATAGACCACTCCCCCTCCTCCCTCGAGT
CGCTATGCGATCGCAGAACGGTGTCTGTACACTCAGCAGTAAGTGAACTT
GCCAAGGGAGTAGCGGCTTGCACGCGAGGCCGCTGCTCTCCAGACATCGC
TTATGAATTGGTGACTGGCGGCACTGCAACACCAAACCCAGGGACTGCCG
TAGAGACAAGGCAGGGGGCTGCTGACGTCAGGGGATGCTGCTGTTGTGTT
GGCGGTCGTCGCAGGCTGCTGCTGCCGGTTGCTGCTATCCTGTGACCTCC
GTCGTCGTCGTCGCGACTGGATTCGAGTGCTGCTAACGGCTGTCTCCGAC
CCATACTCAAATTCGCAAGGCGAGCGTTGCTCAGCAAGTTTGCTTGCGAA
GCCTGTTGGAGCACATTTTGGGCACGCTTGCCGCTAGTGACACTACTATT
GTTCTCATCCCATGATAAGACAGTGGCGTCCTTATTCTCTGATGCTACCA
GTGATGATGTCGTGGGCATAGACCACTCCCCCTCCTCCCTCGAGTCGCTA
TGCGATCGCAGAACGGTGTCTGTACACTCAGCAGTAAGTGAACTTGCCAA
GGGAGTAGCGGCTTGCACGCGAGGCCGCTGCTCTCCAGACATCGCTTATG
AATTGGTGACTGGCGGCACTGCAACACCAAACCCAGGGACTGCCGTAGAG
ACAAGGCAGGGGGCTGCTGACGTCAGGGGATGCTGCTGTTGTGTTGGCGG
TCGTCGCAGGCTGCTGCTGCCGGTTGCTGCTATCCTGTGA
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