mRNA_H-paniculata_contig2024.5231.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2024.5231.1
Unique NamemRNA_H-paniculata_contig2024.5231.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2024.5231.1 vs. uniprot
Match: D7FMS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS3_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 2.460e-31
Identity = 70/115 (60.87%), Postives = 82/115 (71.30%), Query Frame = 1 
Query:   10 HRGFRVDSFARNEGNDREVAHFKFVFTFETV-----DGASVDHNRPVLDVVHERETGKLRVRVNDGRLVETTRSA-VEINLNDVGAVLFNPKVQAKGHHLYTLQLGSNTLFSVLA 336
            HRGFR+D+FARNEG     AHFKFVFT + V     +G      RPVLD +HER TGKLR+RVNDGR + TT SA V+I + +VG VLFNP+  +KGHHLYTL L   TLFSVLA
Sbjct:  102 HRGFRLDTFARNEGETGGKAHFKFVFTLDGVVPGEGEGEESKKARPVLDAIHERATGKLRLRVNDGREMSTTESAAVDIAITNVGVVLFNPRTMSKGHHLYTLSLTGRTLFSVLA 216
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BLAST of mRNA_H-paniculata_contig2024.5231.1 vs. uniprot
Match: A0A6H5JK26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK26_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.170e-29
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:   10 HRGFRVDSFARNEGNDREVAHFKFVFTFETVDGASVDHN-------RPVLDVVHERETGKLRVRVNDGRLVETTRSA-VEINLNDVGAVLFNPKVQAKGHHLYTLQLGSNTLFSVLA 336
            HRGFR+D+FARNEG     AHFKFVFT   +DGA+V          RP+LD +HER TGKLRVRVNDGR + TT SA V+I + ++G V FNP+  +KGHHLYTL L   TLFSVLA
Sbjct:  286 HRGFRLDTFARNEGETGGTAHFKFVFT---LDGAAVPDEGEDAKKARPMLDAIHERATGKLRVRVNDGREISTTESAAVDIAITNIGVVFFNPRTMSKGHHLYTLSLTGRTLFSVLA 399
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2024.5231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMS3_ECTSI2.460e-3160.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK26_9PHAE3.170e-2959.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2024contigH-paniculata_contig2024:18406..22981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000360.1
Exons3
Model size3379
Cds size339
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2024.5231.1prot_H-paniculata_contig2024.5231.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2024 21446..22981 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929523.7877698-UTR-H-paniculata_contig2024:18405..214451622929523.7877698-UTR-H-paniculata_contig2024:18405..21445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2024 18406..21445 -
1691480897.844962-UTR-H-paniculata_contig2024:18405..214451691480897.844962-UTR-H-paniculata_contig2024:18405..21445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2024 18406..21445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929523.8092277-CDS-H-paniculata_contig2024:21445..215111622929523.8092277-CDS-H-paniculata_contig2024:21445..21511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2024 21446..21511 -
1691480897.8568108-CDS-H-paniculata_contig2024:21445..215111691480897.8568108-CDS-H-paniculata_contig2024:21445..21511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2024 21446..21511 -
1622929523.8277447-CDS-H-paniculata_contig2024:22243..224161622929523.8277447-CDS-H-paniculata_contig2024:22243..22416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2024 22244..22416 -
1691480897.8645751-CDS-H-paniculata_contig2024:22243..224161691480897.8645751-CDS-H-paniculata_contig2024:22243..22416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2024 22244..22416 -
1622929523.847949-CDS-H-paniculata_contig2024:22881..229811622929523.847949-CDS-H-paniculata_contig2024:22881..22981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2024 22882..22981 -
1691480897.8721702-CDS-H-paniculata_contig2024:22881..229811691480897.8721702-CDS-H-paniculata_contig2024:22881..22981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2024 22882..22981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2024.5231.1

>prot_H-paniculata_contig2024.5231.1 ID=prot_H-paniculata_contig2024.5231.1|Name=mRNA_H-paniculata_contig2024.5231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
QVAHRGFRVDSFARNEGNDREVAHFKFVFTFETVDGASVDHNRPVLDVVH
ERETGKLRVRVNDGRLVETTRSAVEINLNDVGAVLFNPKVQAKGHHLYTL
QLGSNTLFSVLA*
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mRNA from alignment at H-paniculata_contig2024:18406..22981-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2024.5231.1 ID=mRNA_H-paniculata_contig2024.5231.1|Name=mRNA_H-paniculata_contig2024.5231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4576bp|location=Sequence derived from alignment at H-paniculata_contig2024:18406..22981- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGCACATCGGGGATTCCGCGTGGATTCGTTTGCTCGAAATGAGGG
CAACGATCGAGAAGTGGCGCATTTCAAGTTCGTTTTCACCTTCGAAACAG
GTCAGCTCTGATTCTCGAACCACGATACATCCCAACGCGTGGTGTTGGCG
TAGATATATTTTTGCCCTGCCATGCCGTACCTAACGTATCAACTTCGGGG
AGCATCGATCATGTTTCGCTCGTCTCCGCATCAACCAGCGGTGAGTATTT
TGCATATTTGGTGTCATAGCAAGATTCAAATGCGACAGCAGCTTGTTGTT
GGGTCACAGTAAATTGCTCACCATTGCAGAATGTGTCAAATACACATCAC
GTCCTTGAACCCCTCGTCCGCCACATTAGCATCCTGTGCTCCATCCTTAT
TCTTGGTTGGGAATTGGATGCTAGTGCCTTGATTGCTAGTTACATGCGAT
ACATAGCGCCTGCAGTGAGTGAACAATCCCGAATATAAAAGTGGCACGCT
GGAGGTTAACTGTTGCCTTTTTTTTTTTTTTCGTGTTTCGTGTTTATTGT
TCTTGTCCTTACCAGTGGATGGCGCGAGCGTGGATCACAACCGACCTGTA
CTAGATGTCGTGCACGAACGCGAGACAGGAAAATTGCGAGTGCGAGTAAA
TGATGGGAGGCTTGTGGAAACCACGAGAAGCGCAGTCGAGATTAATCTTA
ATGATGTTGGGGCCGTGTTGTTCAACCCCAAAGTGCAGGTATGTATGGTG
TATGTTTTGTTCTTTGCATATCGCGTCTTGTGTTGAATGCATTAATTGAG
TGTGTGTGTGTGAGGGGGAGGGGGGGGGGGTACTTCGATATGCCCAGATC
GAGCCATGGACGCGTATTTTGTGGCTCGATTGATACTTGAATGTTTGAAC
TGCTCCTGGAGAAAATATAATAAATTACGGGTCAGCGGGGTTTGTAGCAT
CGCAATACAGTAGCGTAACTCAACCTCGAGGCGGTTGCGCTCTATTGCGC
TCTACATACTAGACAGTACGCAAGGGCACCATGCATGTGCCTGCACTGTA
GTGAGTGGCGTTTATCCAGCACGTGAGATTGCAAGCAAGACGCTTGGCCG
TGCCCCCAAAACGGAGTTGTCGAACCACGTTGTACTTACCAATGTATCCA
AGAAAATTATTGGGAATTTATAGTGGCACGTAATATGATTATGCTGCAAT
ACCTGGCGACAAGTGCCTGAACACTGTCACTAGTGACGATTGCATTGTGT
AATGTCTTCAGTAATACGATGACGTCAAATATTTTTGTGTGTTTCGACTT
GGTTGTCGCCTGCTGTGGCCAATAGCCCTGGGAAATCGAAGCAGGACATC
ATTGAATGACCCACACCCTATTGCATGTCCAGGTACAAGAACGGTTCGAT
GCACCTCCCCAACATATGCGCCGTGTCTTGATATCCTGATTGTAATTTTT
TTCGTTGTCGTATTTTTCAGGCGAAGGGGCACCATCTGTACACCCTTCAA
TTGGGCTCCAATACACTCTTCAGCGTCTTGGCGTGAAAATCGGTACTGCC
CAATATGTCAGCCCAAACTCACCTACGTACTTGTATGTTGGTGCTATGAG
CCTACGCCATTCGGCGATTGGACTGAGGTGTCTACAGACTGTTGTAGTTG
AACCGTTGAGATTTTGGGGTCGTCAGATGTAAGGGATTGATTAGTTGTGG
TACAGTATGAGACATGATCATTTTATTACACTGACATGTAAAGGCGACGA
AACTAAACCAGTGTAAAGCCATAAGGGTGGTAATTTCCTTGTGTGCCCCA
TGAATGGGAGTGTTGATTCGTTCATGGTGATGATGGTGATCACGGCGTGT
TATCGAGCGCTCGTTAGGAAGTTTTGTATTGGAAGAAAGATCACATATTC
GAAAGACTGGAGAATGACATGAAATGTAGCGGTCAGGTTAGTTCTGCAAG
ACAAATTTTACAAAAATGGGTGTATTTTGCGCGGCGTTGTTCGTGTTTCA
GTGCGTCAAACTGCAGTAGACGTAGTAGCGCTGCCGGGCATATTCTCGAG
AGTGTTTTTCACGTGGTGGATCATGACATGAACAGTTGCTACCAACAATT
AAGTGCTGGTAGGTTGTCACAGGGCGTGCTGAATCTCTACTTGAATCGTG
TAGACAGGACCGTTTGCTATCATGTGCGTCGAGTAGGAATGCTTGCGTGG
GATGCGCACGAGAGTGTCGAGCCTCAGTGAAGTTTGGCTTCACCGGGTGA
CTGCTTCACTAGTTGCCTCGTACTTGAGATGACAGGTGAGGTGTTCTCTC
GCTATCTCCGTGTCACCTGCGATATCGCTTTGGGGTGGTCATCAGTGTAC
TCTGGAGTTGGAAACGTGGTTGGCTGGTCATGTGCGACGACTAGGGTCTT
CCCAAACTGTAGAAATTGCGAGCACTTGAATTGGTGGCCATATGAAGACA
AGGCGAGGCGAGGCCAAGCAAGGGAGTCTCAATAGCCAAGCGTCGGGTGC
GCTGGTTTCTGTTGGTTTGGTTTTCGCCCTGTTTTTGTTTCCCTTCTGTT
GCTGCCTCGCAGGAAATTTTGGCCGGGATGGTTCGATGAGGGTTAGTTGG
TTTATTTACTGTGCATGAGCGCTGCACTACTATTGTTGATTTTGTTGATT
TTTCTTAAAATGAGGAGTTTCATACTGTGGCATTGTAGGTGGTCGCTGAT
GTACGCATCCGGGCTATTTCACCTAGGACCTGAATTCTCGGTCTAGAGGG
GTTGTGTCGCTTTTGCATGGTGAGAATTATGCTTGCTGTATGGGAATTTT
GTAGTTTTGCCCGCTTCGCAGTCGTCCTGAGGGCATGGTGTGAAATTCAT
TATTCACGCGTATATGTGAAAGTTCGTGTGGCATCATATCATGAATCTTG
ATCAAGGGGTTTTGCCGTCTCGCAGACCGAAGGCATATTGACAGCATTGC
CTATCGTATGATATGGACCAATTTAGGCATCGGCTCTCTTTTGTGGCCAA
CTGTATGCTATTGATCGTCGATTCATCTTGTAGAGGTATTTAGTGACAGT
ATTTGTGTTTTATTGTTGACGAGGGGGGCGTGTGAGTAACTCTCGGGGTA
CGCACCGTAAGACGTGATTGGTTTCGTTCTTTTAGGTCGATCATCTACAT
CTATAGGCCGTATCCGTTATGTATCGGAGACGTCGGGTTCCTGCTGTATC
TGCCCCTCGAGGAAACCACGCCCGGTGCCCCTACTCTGGCAAAGTGATGC
TGATGTGGGTTGAGTTTATTTTTGTTGAGAAACAGTCTCAGGCGTACGGT
CGCGATCTGCTTTTATTATTCATCGGAGGGGGTTGCTAGAGAGCACCTGC
AAGCATCGAGTGTGCCGTATTTATCGTTCATGTGGAAGGTAACGGCGTCG
TCGTCAGGCGGCGCCGATCACTTGTGCGTTGACACAATGACCTAGCTCTT
TTCACGTCTACTTTACGTAAGCATCTTGTTTCCTCTGGCGTTGCACGCTG
GAAAATATTAGGATCGGTGACTTATGGAGAGTCAAGCTCGCATCATCCGT
ATACATGTAAATGTATATCACTGTTTGCAAGGCACCAGTACTGTACTGTC
TGTAGCGTGCACATTTTGAGGCAAAAAGAAGGAGGGGTAGCTTGTGTCTA
TTCATTCGTTCATCTATGTATTTCATGTTACTTGTTGCGGTTTATGTGTT
TAACTCAGCACATACGCGTGTATTGTTTGTATGTAAAGGACGTCTAGGCG
GCCGGTTTGTGTGATCGGCGATATATGCATGTGGTTGGAGGCATGCAGTG
GATGAGTTCGTTACATATATATATGTACTGCAGTGGAATATGCATTCCAC
ACATTCGCGAGCGCAGCGTGAGCCCACTAACTAGTTAGCTTCGACGACGC
GTTTTACGCGTTGCGAACCCGTACTGTAGATGGCACAAAGCGTATAGATG
AAAAATACGTGTAAAGGTGAACAATAGGTTCATTTTTCTACTTTTACCTT
TACCCGAGCATGTAAGCTGTCTTTACAGCACGGCAAGTGTAGGCGGTTTG
TATAATCGGGGATAAGATTTCATCATGGTCATGGGATAGGAAGAAAGTGC
ATCCGGTCTGCAGTGGTAACTGTGCCCAAAATGGGCGCGGTGCCATCAAA
CATAGATATTATATGTTGTGTGTGTGTTGATTTCGAGTGTAATTATTACT
CGATCATGCTCCTGAGGGTATGGATGATGATGTGATAACCCGCACCAGGG
CAGTAAATAGAATGACATACGTGACTGGGTTAGAGGTAAAACGGCGGAAA
AGGTAAAGGGATTTTCTGATACGTCTACCTGGATATCTGGTTCGGTTGGT
CTTCTTCCGTTTTCCTTTTCATGGCTTGCATGTATCACGAATAATAATGT
ATATGATCTCGCACATCACAATCAGCGCATCCATTACATGACCGTGTATG
TACTGGGGCGACATGCTAGTATCACCATACACATTCTTCATTTCTCTATT
TCATCAGCGAAATGCGCATGTTGTGCATGAACGTGTGTTTGAGATAGGCA
CGGCAATTAAAAAATATATGCTGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2024:18406..22981-

>mRNA_H-paniculata_contig2024.5231.1 ID=mRNA_H-paniculata_contig2024.5231.1|Name=mRNA_H-paniculata_contig2024.5231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig2024:18406..22981- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGCACATCGGGGATTCCGCGTGGATTCGTTTGCTCGAAATGAGGG
CAACGATCGAGAAGTGGCGCATTTCAAGTTCGTTTTCACCTTCGAAACAG
CAGGTGGCACATCGGGGATTCCGCGTGGATTCGTTTGCTCGAAATGAGGG
CAACGATCGAGAAGTGGCGCATTTCAAGTTCGTTTTCACCTTCGAAACAG
TGGATGGCGCGAGCGTGGATCACAACCGACCTGTACTAGATGTCGTGCAC
GAACGCGAGACAGGAAAATTGCGAGTGCGAGTAAATGATGGGAGGCTTGT
GGAAACCACGAGAAGCGCAGTCGAGATTAATCTTAATGATGTTGGGGCCG
TGTTGTTCAACCCCAAAGTGCAGTGGATGGCGCGAGCGTGGATCACAACC
GACCTGTACTAGATGTCGTGCACGAACGCGAGACAGGAAAATTGCGAGTG
CGAGTAAATGATGGGAGGCTTGTGGAAACCACGAGAAGCGCAGTCGAGAT
TAATCTTAATGATGTTGGGGCCGTGTTGTTCAACCCCAAAGTGCAGGCGA
AGGGGCACCATCTGTACACCCTTCAATTGGGCTCCAATACACTCTTCAGC
GTCTTGGCGTGAGCGAAGGGGCACCATCTGTACACCCTTCAATTGGGCTC
CAATACACTCTTCAGCGTCTTGGCGTGA
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