mRNA_H-paniculata_contig20234.5227.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20234.5227.1
Unique NamemRNA_H-paniculata_contig20234.5227.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A6H5KU00_9PHAE (Rieske domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU00_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 7.820e-46
Identity = 63/91 (69.23%), Postives = 75/91 (82.42%), Query Frame = 1
Query:   19 WPYDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTD-GHIECLYHGWQFNGKDGKCVHIPQV 288
            WPYDWRKHWY +GY++D   G KPF +SIFDEPL++YRD  G LQCVSDFCPHRA+KLSEG +T+ G+IECLYHGWQF G  G CV +PQ+
Sbjct:   86 WPYDWRKHWYAVGYDRDIVEGPKPFAVSIFDEPLMLYRDTSGALQCVSDFCPHRAAKLSEGQITEEGNIECLYHGWQFEGSKGTCVKVPQL 176          
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: D7FIF8_ECTSI (Rieske domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF8_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.530e-38
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 1
Query:   43 WYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVT-DGHIECLYHGWQFNGKDGKCVHIPQV 288
            WY +GY++D   G KPF +SIFDEPL++YRD  G LQCVSDFCPHRA+KLSEG +T DG+IECLYHGWQF G  G CV +PQ+
Sbjct:   30 WYAVGYDRDIVEGPKPFAVSIFDEPLMLYRDTSGALQCVSDFCPHRAAKLSEGQITEDGNIECLYHGWQFEGSKGACVKVPQL 112          
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A388KFK8_CHABU (Rieske domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KFK8_CHABU)

HSP 1 Score: 131 bits (329), Expect = 2.260e-33
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQV 288
            YDWR  WY +   KDFP   KP  +++FD+PLV+YRD  G ++CV D CPHR +KLSEG V +G IECLYHGWQF G+ GKCVHIPQ+
Sbjct:  189 YDWRAEWYPVYCSKDFPSD-KPVAVTLFDKPLVLYRDDKGMVRCVEDMCPHRLAKLSEGQVLNGRIECLYHGWQFEGESGKCVHIPQL 275          
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A388KY13_CHABU (Rieske domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KY13_CHABU)

HSP 1 Score: 130 bits (326), Expect = 6.010e-33
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    1 EDENEAWPYDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQV 288
            +D  +  PYDW+  WY + Y ++FP G KP  ++IFD+PLV+YRD  G ++CV D CPHR +KLSEG + +G +ECLYHGWQF G+ GKCV IPQ+
Sbjct:  189 DDSQKQVPYDWQAEWYPVWYSREFPDG-KPVPITIFDKPLVLYRDSAGIVRCVEDKCPHRLAKLSEGQLLNGRLECLYHGWQFEGETGKCVQIPQL 283          
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A251RLE2_HELAN (Rieske domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RLE2_HELAN)

HSP 1 Score: 127 bits (320), Expect = 1.810e-32
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQV 288
            YDW + WY L   KD P    P GL++FD+ +V+YRDG+G LQC  D CPHR +KLSEG + DG +ECLYHGWQF G +GKCV IPQ+
Sbjct:   73 YDWTEEWYPLYLTKDVPDDA-PLGLTVFDKQVVLYRDGNGDLQCYEDRCPHRLAKLSEGQIVDGRLECLYHGWQFEGNEGKCVKIPQL 159          
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A218QBH7_9CYAN (Rieske [2Fe-2S] domain-containing protein n=1 Tax=Tolypothrix sp. NIES-4075 TaxID=2005459 RepID=A0A218QBH7_9CYAN)

HSP 1 Score: 124 bits (311), Expect = 1.540e-31
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1
Query:   25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQVYNEKK 303
            +DWR+ WY + + +D P   +P+  S++DEP V++RD DG L C+ D CPHRA+K S+G +TDG IECLYHGWQF G DG+C+HIPQ+  E K
Sbjct:   24 FDWRQCWYPVCFVQDLPKN-QPYSFSLYDEPFVLFRDQDGKLVCLVDRCPHRAAKFSDGQITDGKIECLYHGWQF-GSDGQCLHIPQLPTEAK 114          
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A9NLU4_PICSI (Rieske domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NLU4_PICSI)

HSP 1 Score: 118 bits (295), Expect = 1.720e-31
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQV 288
            Y+W   WY L    + P    P GL++FD+ LV+Y DG+G LQC  D CPHRA+KLSEG + +G +ECLYHGWQF G DGKCV IPQV
Sbjct:   93 YNWENEWYPLYLAAEVPKDA-PLGLTVFDKQLVLYEDGNGVLQCYEDRCPHRAAKLSEGQLMEGRLECLYHGWQFEG-DGKCVKIPQV 178          
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A7J8XTJ2_GOSAI (Rieske domain-containing protein (Fragment) n=1 Tax=Gossypium aridum TaxID=34290 RepID=A0A7J8XTJ2_GOSAI)

HSP 1 Score: 118 bits (296), Expect = 1.780e-31
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQVYNEKK 303
            Y+W + WY L   KD P    P GL++FD+ LV+Y+DG+G L C  D CPHR +KLSEG + DG +ECLYHGWQF G +GKCV IPQ+  + K
Sbjct:   86 YNWTEEWYPLYLTKDVPDDA-PLGLTVFDQQLVLYKDGNGVLHCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-NGKCVKIPQIPADAK 176          
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: V4JRA6_9GAMM (Uncharacterized protein n=2 Tax=Chromatiaceae TaxID=1046 RepID=V4JRA6_9GAMM)

HSP 1 Score: 124 bits (311), Expect = 1.980e-31
Identity = 49/93 (52.69%), Postives = 70/93 (75.27%), Query Frame = 1
Query:   25 YDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQVYNEKK 303
            +DW +HWY + + +D P   +P G SI+DEPLV+YRDGD  L C++D CPHRA++LSEG + DG +EC YHGWQF+  +G+C HIPQ+ + ++
Sbjct:   25 FDWHQHWYPVSFLEDLPA-QQPMGFSIYDEPLVLYRDGDQRLVCLADRCPHRAARLSEGKLVDGRLECFYHGWQFDA-EGQCRHIPQMPSSRR 115          
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Match: A0A846B375_9CYAN (Rieske 2Fe-2S domain-containing protein n=1 Tax=Okeania sp. SIO2C9 TaxID=2607791 RepID=A0A846B375_9CYAN)

HSP 1 Score: 116 bits (290), Expect = 2.070e-31
Identity = 47/92 (51.09%), Postives = 68/92 (73.91%), Query Frame = 1
Query:   28 DWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHLQCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQVYNEKK 303
            +WR  WY + + +D P   +P+  S++DEPLV++R+ +G L C++D CPHRA+KLS+G + DG IECLYHGWQF G  G+C+HIPQ+  + K
Sbjct:   24 NWRNCWYPVTFIQDLPKN-RPYSFSLYDEPLVLFRNNNGQLICLTDVCPHRAAKLSDGQIIDGKIECLYHGWQF-GNGGECLHIPQLPADAK 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20234.5227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU00_9PHAE7.820e-4669.23Rieske domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FIF8_ECTSI3.530e-3867.47Rieske domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A388KFK8_CHABU2.260e-3361.36Rieske domain-containing protein n=1 Tax=Chara bra... [more]
A0A388KY13_CHABU6.010e-3355.21Rieske domain-containing protein n=1 Tax=Chara bra... [more]
A0A251RLE2_HELAN1.810e-3259.09Rieske domain-containing protein n=1 Tax=Helianthu... [more]
A0A218QBH7_9CYAN1.540e-3154.84Rieske [2Fe-2S] domain-containing protein n=1 Tax=... [more]
A9NLU4_PICSI1.720e-3157.95Rieske domain-containing protein n=1 Tax=Picea sit... [more]
A0A7J8XTJ2_GOSAI1.780e-3154.84Rieske domain-containing protein (Fragment) n=1 Ta... [more]
V4JRA6_9GAMM1.980e-3152.69Uncharacterized protein n=2 Tax=Chromatiaceae TaxI... [more]
A0A846B375_9CYAN2.070e-3151.09Rieske 2Fe-2S domain-containing protein n=1 Tax=Ok... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20234contigH-paniculata_contig20234:2634..4044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue2.3e-29
Seed eggNOG ortholog2880.D7FIF8
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0015031,GO:0015833,GO:0031967,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072596,GO:0072598
EggNOG free text desc.chlorophyllide a oxygenase [overall] activity
EggNOG OGs2QT2X@2759,COG4638@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size315
Cds size315
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20234.5227.1prot_H-paniculata_contig20234.5227.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20234 2634..4044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929523.3255653-CDS-H-paniculata_contig20234:2633..27441622929523.3255653-CDS-H-paniculata_contig20234:2633..2744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20234 2634..2744 -
1691480897.6706522-CDS-H-paniculata_contig20234:2633..27441691480897.6706522-CDS-H-paniculata_contig20234:2633..2744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20234 2634..2744 -
1622929523.3412445-CDS-H-paniculata_contig20234:3179..33421622929523.3412445-CDS-H-paniculata_contig20234:3179..3342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20234 3180..3342 -
1691480897.686591-CDS-H-paniculata_contig20234:3179..33421691480897.686591-CDS-H-paniculata_contig20234:3179..3342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20234 3180..3342 -
1622929523.3607965-CDS-H-paniculata_contig20234:4003..40441622929523.3607965-CDS-H-paniculata_contig20234:4003..4044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20234 4004..4044 -
1691480897.699148-CDS-H-paniculata_contig20234:4003..40441691480897.699148-CDS-H-paniculata_contig20234:4003..4044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20234 4004..4044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20234.5227.1

>prot_H-paniculata_contig20234.5227.1 ID=prot_H-paniculata_contig20234.5227.1|Name=mRNA_H-paniculata_contig20234.5227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
EDENEAWPYDWRKHWYGLGYEKDFPVGVKPFGLSIFDEPLVVYRDGDGHL
QCVSDFCPHRASKLSEGMVTDGHIECLYHGWQFNGKDGKCVHIPQVYNEK
KTES*
back to top

mRNA from alignment at H-paniculata_contig20234:2634..4044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20234.5227.1 ID=mRNA_H-paniculata_contig20234.5227.1|Name=mRNA_H-paniculata_contig20234.5227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1411bp|location=Sequence derived from alignment at H-paniculata_contig20234:2634..4044- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGACGAAAATGAAGCCTGGCCATATGACTGGCGTAAACAGTTGAGAAA AAAAAAATGTAATGAGCAGGCAGCGCGGCTAGAGTCCAACAAGAGCCGCA ACGTACCCCCTTTCCCTTTAGGGAGAGAGACCTACTTGTGCAGGCGCTGG CGCTTCGAGTTTTCTTGTAGCTGAAACGGTGGCGATCGATTGTGTCAGGG TCAGGGTTACATTTAAGGGTTACCGCAGCCTTGTCGTTCTCTTCAGACAC AGTAATAAATTTGAAACAAGTTTGTTTCTGCCCGAAAACAAGCTCCTGAT GAATGAGGTAGCGCTTCGTGTATCGTGTTTGTATCTGGCGATCTTTGAGG GTATGAAATTCCGACACTGACACGGAAGGTCTTATACACCCTTGACCTTG ACCTTGCGAGGGTGTAAAACACTATCCTGTTAACGCGTCACACCAAAATA TTGTCAACTTGTGTATCATCGTACCATGCCTGTGTCAACGGCTGGAATGT ACAGGCGATGCCAGCAGTCGTCACATAAGATCTTGCGAGCAGATATCTTG TTTTTTCAGCGTTTTCGCCACAGCGCCACAATAATTAACAGCAGTCCGCG TCCACCTCGCTGATTATCCCTTCGTGCCCCCCACTCGTGCTTTCTTCGCG ATGGTGCCCGACTCGGTCACGGTCGCCTGGGATCACTATCTGCCGACACT AGCTGGTACGGTCTGGGCTACGAGAAAGATTTTCCAGTCGGAGTAAAGCC TTTCGGGTTGTCGATATTCGACGAGCCGTTGGTCGTGTACAGGGACGGTG ACGGACATTTGCAGTGCGTGAGCGACTTTTGCCCGCATCGGGCCTCCAAG CTGTCTGAGGGGATGGTGAGTGTGACTGGTTCGGTCCCTTAGTTACTCGC ATGGGATCCTCAAACTTCTTATCGGTTCTTCTGTAAGCCCCCCTAACCAT TGCGTACGTACACGCATGCGTAGGTCGAGAACATCAAGCTCTACAAACGG TTCACAATTTCGAAATGTTAATGCCTTCGTACCACCAATGCTCATATATG GCGTCTTGGGGTAACAGCTGGAAGGAATGCAGTGTCTGCTGCACCATGAT CGGAAAGTCCAACATATTATTACCCTTCGTCTTTACGTACATACTTCCGA GATGTGCTGTCTGTACATACGTGGAAGATATTTGGTTTAACCAAAGTATA TCACACACCCATACGGCAGTTGGTGATTAACTGATACGCTCTTGTTGTCC TTGCACTCGCGATGTGCGTTTTGTGTGTGTCTATCTACTGCTGTATGTAG GTAACCGACGGACATATCGAGTGCCTATACCATGGTTGGCAGTTCAATGG AAAGGACGGCAAATGTGTTCACATCCCGCAGGTATATAACGAGAAGAAGA CCGAGAGTTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20234:2634..4044-

>mRNA_H-paniculata_contig20234.5227.1 ID=mRNA_H-paniculata_contig20234.5227.1|Name=mRNA_H-paniculata_contig20234.5227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig20234:2634..4044- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGACGAAAATGAAGCCTGGCCATATGACTGGCGTAAACAGAGGACGAA
AATGAAGCCTGGCCATATGACTGGCGTAAACACTGGTACGGTCTGGGCTA
CGAGAAAGATTTTCCAGTCGGAGTAAAGCCTTTCGGGTTGTCGATATTCG
ACGAGCCGTTGGTCGTGTACAGGGACGGTGACGGACATTTGCAGTGCGTG
AGCGACTTTTGCCCGCATCGGGCCTCCAAGCTGTCTGAGGGGATGCTGGT
ACGGTCTGGGCTACGAGAAAGATTTTCCAGTCGGAGTAAAGCCTTTCGGG
TTGTCGATATTCGACGAGCCGTTGGTCGTGTACAGGGACGGTGACGGACA
TTTGCAGTGCGTGAGCGACTTTTGCCCGCATCGGGCCTCCAAGCTGTCTG
AGGGGATGGTAACCGACGGACATATCGAGTGCCTATACCATGGTTGGCAG
TTCAATGGAAAGGACGGCAAATGTGTTCACATCCCGCAGGTATATAACGA
GAAGAAGACCGAGAGTTAGGTAACCGACGGACATATCGAGTGCCTATACC
ATGGTTGGCAGTTCAATGGAAAGGACGGCAAATGTGTTCACATCCCGCAG
GTATATAACGAGAAGAAGACCGAGAGTTAG
back to top