mRNA_H-paniculata_contig2023.5225.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: D8LNM3_ECTSI (Phosphoribosylaminoimidazole carboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNM3_ECTSI) HSP 1 Score: 344 bits (882), Expect = 6.290e-113 Identity = 198/318 (62.26%), Postives = 229/318 (72.01%), Query Frame = 2
Query: 80 RMSSTTAQGSSDDHDLPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARST-------------------------PDEKTSPIVATRVSPEKWATISATGLLPGA-TFHADAKLLFIGDAPTLQ-------PGMS-----TLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNS 919
R S+TA G DLP +LA+VAAG+LSP+ L PLLVSGGA+AE+VGG+AKIDHDR RR GFPEVVFG+GK+A+QI +I+ +M+R+ + SP+VATRVSPEKW IS LPG T+HADA+++ G+ P + PG S ++G VAV SAGTSDL VAEEAA+L ELAGAEV RFHDVGVAGIHRLL AIP V+ AG+ IC+AGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSV+NIDNGFGAAAFAVKLL S
Sbjct: 5 RSLSSTATGGEAAGDLPALLARVAAGDLSPATAASQLAPLLVSGGAQAEDVGGFAKIDHDRRRRVGFPEVVFGDGKSAEQITDILAAMIREARAGSRVAAEAAAVHXXXXXXXXXXXXXXXXXXXXSPVVATRVSPEKWLVISDA--LPGQLTYHADARIVSFGEPPQRRRAAGDGAPGGSIATSISIGTVAVLSAGTSDLAVAEEAAVLAELAGAEVSRFHDVGVAGIHRLLGAIPSVQKAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKS 320
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A835ZD94_9STRA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD94_9STRA) HSP 1 Score: 248 bits (633), Expect = 2.610e-76 Identity = 144/270 (53.33%), Postives = 179/270 (66.30%), Query Frame = 2
Query: 161 LSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQAR------------------STPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKL-LFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLL 913
+ P+A E L PLL ++G +AKIDH R RTGFPEVV+GEGKT +QI IM+ M+R + S+ +P VA+R+ KW+ + + G ++ DA+L ++ G AP P +LG VAV AGTSD+ +AEE A+L EL GA V R +DVGVAGIHRL +A+P V A +CIAGMDGAMP VVAGLV+CPVVAVPTSVGYGAA G+APLLTMLNACAPGV+V+NIDNGFGAAA AVK+L
Sbjct: 1 MGPAAAVEQLEPLLT-----IAHIGDFAKIDHHRTIRTGFPEVVYGEGKTPEQIRHIMEVMIRHRKSHSXXXXXXXXXXXXXXXXSSGSVDHAPAVASRICSAKWSHLQH---IDGLQYYRDARLAVYHGSAP---PAAGSLGTVAVMCAGTSDVAIAEETAVLLELCGAAVERVYDVGVAGIHRLFAALPRVRAAHCAVCIAGMDGAMPSVVAGLVRCPVVAVPTSVGYGAAFGGVAPLLTMLNACAPGVAVVNIDNGFGAAAMAVKIL 259
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A3C0N4P5_9CYAN (Nickel pincer cofactor biosynthesis protein LarB n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A3C0N4P5_9CYAN) HSP 1 Score: 224 bits (572), Expect = 2.980e-67 Identity = 140/275 (50.91%), Postives = 181/275 (65.82%), Query Frame = 2
Query: 125 LPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGNERLAGGGK 949
L ++L VAAGE+ P+ E L L E VG +A+IDH R RTGFPEV++G GKT QI +IM+ M RD A PD PI+ATR+ P+ +A + +PG ++ A++ I TL+P S G +++ AGTSDL VAEEAAI EL G +V R DVGVAGIHRLL+ + +A ++I IAGM+GA+P VVAGL CPV+AVPTSVGYGA SGLAPLLTMLN+CA GV V+NIDNGFGAA A ++L + ++ G+
Sbjct: 7 LQSLLEAVAAGEVKPAVALEKLKHLAY------ETVGDFARIDHHRRLRTGFPEVIWGPGKTPDQIAQIMEVM-RDAAA--PD--IVPIMATRIEPDVFAKLQEK--VPGIQYYPTARICAI-TPKTLEPTYS--GIISLICAGTSDLPVAEEAAITAELCGFQVRRLWDVGVAGIHRLLNNRQVIAEANVLIVIAGMEGALPSVVAGLADCPVIAVPTSVGYGANFSGLAPLLTMLNSCAAGVGVVNIDNGFGAAILAGQILRTAHKLQGSTGE 265
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: UPI0016878F7A (Nickel pincer cofactor biosynthesis protein LarB n=13 Tax=Coleofasciculus TaxID=669368 RepID=UPI0016878F7A) HSP 1 Score: 224 bits (571), Expect = 3.480e-67 Identity = 136/269 (50.56%), Postives = 177/269 (65.80%), Query Frame = 2
Query: 125 LPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIV-ATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGNE 928
L ++LA VAAG++SP A E L E VG +AKIDH R RTGFPEV++G GKT +QI IM++M +P+V ATR+ P +A + + G ++A A++ I A TL+P S G +A+ AGT+DL VAEEAA+ EL G +V R DVGVAGIHRLLS +E A ++I +AGM+GA+P VVAGL CPV+AVPTSVGYGA+ GLAPLLTMLN+CA GV V+NIDNGFGAA A ++L + ++
Sbjct: 7 LQSLLAAVAAGDVSPEAALEKLKHFAF------EPVGDFAKIDHHRTLRTGFPEVIWGPGKTPEQIAGIMEAM----------RSRNPVVMATRIEPAVYAQLQEK--VAGLQYYASARICAISPA-TLEPQYS--GTIAILCAGTADLSVAEEAAVTAELCGFQVQRLWDVGVAGIHRLLSNRHVIESANVLIVVAGMEGALPSVVAGLADCPVIAVPTSVGYGASFGGLAPLLTMLNSCAAGVGVVNIDNGFGAAILAGQILRTAHK 254
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: UPI00187FF609 (Nickel pincer cofactor biosynthesis protein LarB n=2 Tax=Gloeocapsopsis crepidinum TaxID=693223 RepID=UPI00187FF609) HSP 1 Score: 223 bits (568), Expect = 9.170e-67 Identity = 133/268 (49.63%), Postives = 180/268 (67.16%), Query Frame = 2
Query: 125 LPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGNE 928
L ++L VAAGE++P+ + L L E VG +A++DH R RTGFPEV++G GKT QI +IM +M RD+ S ++ATR+ PE +A + +P ++A A++ I APT++P S G + + SAGT+DL VAEEAA+ EL+G V R DVGVAGIHRLL+ +E A ++I +AGM+GA+P VVAGL CPV+AVPTS+GYGA+ GLAPLLTMLN+CA GV V+NIDNGFGAA A ++L + N+
Sbjct: 7 LRSLLESVAAGEVNPAEALDKLKHL------NYEPVGDFARVDHHRRLRTGFPEVIWGLGKTPDQIAQIMMAM-RDRG--------SVVMATRIEPEVYAQLQEK--VPNLHYYAMARICAI--APTIEPQYS--GTIGILSAGTADLPVAEEAAMTAELSGFRVQRLWDVGVAGIHRLLNNRHVIESADVLIVVAGMEGALPSVVAGLADCPVIAVPTSIGYGASFGGLAPLLTMLNSCAAGVGVVNIDNGFGAAVLAGQILRTVNK 253
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A350YA24_9CYAN (Nickel pincer cofactor biosynthesis protein LarB n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A350YA24_9CYAN) HSP 1 Score: 222 bits (565), Expect = 3.410e-66 Identity = 134/268 (50.00%), Postives = 175/268 (65.30%), Query Frame = 2
Query: 125 LPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGNE 928
L ++L VAAG++S E L E VG +AKIDH R RTGFPEV++G GKT QI +IM++M R + ++ATR+ P+ +A + A + G ++ A++ I P +QP G ++V AGTSDL VAEEAA+ EL G +V R DVGVAGIHRLLS + DA ++I IAGM+GA+P VVAGL CPV+AVPTSVGYGA+ +GLAPLLTMLN+CAPGV V+NIDNGFGAA A ++L + N+
Sbjct: 7 LQSLLEAVAAGQISSDIALEKLKNFAF------EPVGDFAKIDHHRSLRTGFPEVIWGLGKTPNQIAQIMEAMQR---------RNPLVMATRIEPDVFAQLEAH--IAGIHYYPTARICAIAPNP-IQPKYP--GIISVICAGTSDLPVAEEAAVTAELCGFQVQRLWDVGVAGIHRLLSHRQMIADANVLIVIAGMEGALPSVVAGLADCPVIAVPTSVGYGASFNGLAPLLTMLNSCAPGVGVVNIDNGFGAAILAGQILRTANK 254
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A1Z4IRY5_9CYAN (Putative phosphoribosylaminoimidazole carboxylase catalytic subunit n=4 Tax=Nostocales TaxID=1161 RepID=A0A1Z4IRY5_9CYAN) HSP 1 Score: 221 bits (564), Expect = 3.510e-66 Identity = 129/269 (47.96%), Postives = 176/269 (65.43%), Query Frame = 2
Query: 113 DDHDLPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNS 919
D+ L ++L VA G ++P A E L L E VG +AKIDH R RTGFPEV++G GKT+ QI +IM++M ++ ++ATR+ P+ +A + + G ++ A++ I PT++P LG + + SAGT+DL VAEEAA+ EL+G V R DVGVAGIHRLL+ +E A ++I +AGM+GA+P VVAGL CPV+AVPTS+GYGA+ GLAPLLTMLN+CA GV V+NIDNGFGAA A ++L +
Sbjct: 3 DEKSLRSLLETVANGNITPDAALEKLKNLAY------EPVGEFAKIDHHRALRTGFPEVIWGPGKTSDQIAQIMEAM---------RQRNPVVMATRIEPDVFAALETK--VQGLCYYDSARICAI-TPPTIEP--QYLGTIGILSAGTADLPVAEEAAVTAELSGFRVQRLWDVGVAGIHRLLNNRHVIESASVLIVVAGMEGALPSVVAGLADCPVIAVPTSIGYGASFGGLAPLLTMLNSCAAGVGVVNIDNGFGAAVLAGQILRT 251
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: UPI001680140E (nickel pincer cofactor biosynthesis protein LarB n=1 Tax=Pseudanabaena sp. FACHB-723 TaxID=2692860 RepID=UPI001680140E) HSP 1 Score: 220 bits (561), Expect = 8.420e-66 Identity = 133/268 (49.63%), Postives = 171/268 (63.81%), Query Frame = 2
Query: 122 DLPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGN 925
+L IL VA GELSP E L L E VG +AKIDH R RTGFPEV+FG GKT +QI++IM+ M + K ++AT++S +A I L G + AK+ +G++ M G + + +AGT+DL +AEEAA+ EL G +V R DVGVAGIHRLLS + DA ++I +AGM+GA+ VVAGL CP+VAVPTS+GYGA+ +GLAPLLTMLN+CA GV V+NIDNGFGAA A K+L S N
Sbjct: 4 NLKQILDHVAKGELSPEIALEKLKYL------HYETVGDFAKIDHHRTLRTGFPEVIFGLGKTPEQIIQIMRVM---------ESKNPLVMATKISESVYAEIQPA--LRGLRYFPIAKICCLGEST-----MQKQGTITILTAGTADLPIAEEAAVTGELCGFQVKRLWDVGVAGIHRLLSHRETIADAEVIIVVAGMEGALASVVAGLADCPIVAVPTSIGYGASFNGLAPLLTMLNSCATGVGVVNIDNGFGAAMLAGKILRSRN 249
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A563W425_9CYAN (Pyridinium-3,5-biscarboxylic acid mononucleotide synthase n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563W425_9CYAN) HSP 1 Score: 220 bits (561), Expect = 1.300e-65 Identity = 124/270 (45.93%), Postives = 178/270 (65.93%), Query Frame = 2
Query: 122 DLPTILAQVAAGELSPSAGTEMLTPLLVSGGARAENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLL-FIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNSGNE 928
DL +L +VA G L P + L E + +AKIDH RHRR GFPEV++GEGKT +QI++IMQ+M R ++ P++ATR+ + + +P +++ AK+ + + LQ G +++ +AGTSD+ VAEEAA+ EL+G +V R DVGVAGIHRLLS + +V++A ++I +AGM+GA+P +V GL +CPV+AVPTS+GYGA+ +GL+ LLTMLN+CA G+ VMNIDNGFGAA A K+L + N+
Sbjct: 6 DLKQLLQKVADGSLKPETALHQIKNL------GFEPIEEFAKIDHHRHRRNGFPEVIWGEGKTPEQIIKIMQAMQRQNQEL---QQPLPVMATRIEESVFTQLQTA--IPQLNYYSIAKIAALVPEYLMLQKS----GLISIITAGTSDIPVAEEAAVTAELSGFQVKRLWDVGVAGIHRLLSNLQYVQEADVLIVVAGMEGALPSIVGGLAQCPVIAVPTSIGYGASFNGLSALLTMLNSCASGIGVMNIDNGFGAAILAGKILKTANK 260
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Match: A0A7S2RJP4_9STRA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJP4_9STRA) HSP 1 Score: 221 bits (564), Expect = 1.360e-65 Identity = 128/232 (55.17%), Postives = 157/232 (67.67%), Query Frame = 2
Query: 224 ENVGGYAKIDHDRHRRTGFPEVVFGEGKTAQQILEIMQSMVRDQARSTPDEKTSPIVATRVSPEKWATISATGLLPGATFHADAKLLFIGDAPTLQPGMSTLGKVAVFSAGTSDLCVAEEAAILTELAGAEVLRFHDVGVAGIHRLLSAIPHVEDAGLVICIAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVMNIDNGFGAAAFAVKLLNS 919
E V YA+IDH R RRTG PEV+FGEGK+ +QI+ I + M R A P+++ +ATRVS +A I LP ++ DA++ +G +Q S ++AV AGTSDL VAEEAA+ EL G V R +DVGVAG+HRLL P V A + I +AGMDGA+P VV GL CPV AVP SVGYGAA GLAPLLTMLN+C+PGVSV+NIDNGFGAA AVKLL +
Sbjct: 65 EVVKQYARIDHGRGRRTGLPEVIFGEGKSVEQIISIFEVMKRH-ADELPEDQRRVAMATRVSKSVFAEIQTA--LPEVEYYEDARIAVLGQPKKVQ---SEERRIAVLCAGTSDLPVAEEAAVTAELFGYTVDRVYDVGVAGLHRLLDQFPIVRKASVTIVVAGMDGALPSVVGGLATCPVYAVPASVGYGAAFHGLAPLLTMLNSCSPGVSVLNIDNGFGAAMCAVKLLQT 290 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2023.5225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2023.5225.1 >prot_H-paniculata_contig2023.5225.1 ID=prot_H-paniculata_contig2023.5225.1|Name=mRNA_H-paniculata_contig2023.5225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=306bp MVSTPRVRSAARMSSTTAQGSSDDHDLPTILAQVAAGELSPSAGTEMLTPback to top mRNA from alignment at H-paniculata_contig2023:3119..4803+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2023.5225.1 ID=mRNA_H-paniculata_contig2023.5225.1|Name=mRNA_H-paniculata_contig2023.5225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1685bp|location=Sequence derived from alignment at H-paniculata_contig2023:3119..4803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2023:3119..4803+ >mRNA_H-paniculata_contig2023.5225.1 ID=mRNA_H-paniculata_contig2023.5225.1|Name=mRNA_H-paniculata_contig2023.5225.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1836bp|location=Sequence derived from alignment at H-paniculata_contig2023:3119..4803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |