mRNA_H-paniculata_contig20202.5213.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: D7G4E7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E7_ECTSI) HSP 1 Score: 159 bits (401), Expect = 7.800e-49 Identity = 78/92 (84.78%), Postives = 81/92 (88.04%), Query Frame = 1
Query: 22 MAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFALD 297
M+ LD RR FLRF+TGTPRLPIGGF ALRPRLTVVKKEVDV GGTPD+HLPSCSTCQVYLKLPAYTS ALEAKL HAITEGQDHFALD
Sbjct: 1 MSDLDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 92
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE) HSP 1 Score: 171 bits (434), Expect = 1.640e-47 Identity = 84/99 (84.85%), Postives = 88/99 (88.89%), Query Frame = 1
Query: 1 LKWLARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFALD 297
+KWLARVM+ LD RR FLRF+TGTPRLPIGGF ALRPRLTVVKKEVDV GGTPD+HLPSCSTCQVYLKLPAYTS ALEAKL HAITEGQDHFALD
Sbjct: 2260 VKWLARVMSELDTEGRRQFLRFVTGTPRLPIGGFGALRPRLTVVKKEVDVLPGGTPDSHLPSCSTCQVYLKLPAYTSRAALEAKLKHAITEGQDHFALD 2358
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A835Z7D6_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D6_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.470e-33 Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 1
Query: 10 LARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFALD 297
L V++ LD RR FL F+TG+PRLP+GGF+AL+PRLTVV+K D PR PD HLPSCSTCQVYLKLPAYT L AKLL AI EG++HFALD
Sbjct: 248 LVEVLSELDAAQRRAFLSFVTGSPRLPLGGFAALQPRLTVVRK--DTPR---PDEHLPSCSTCQVYLKLPAYTCKAVLRAKLLQAINEGREHFALD 338
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A2R5GSN0_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSN0_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.610e-29 Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = 1
Query: 10 LARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFALD 297
L V++ LD RR+F++F+TG+PRLP+GGF LRPRLTVV+K V PD LPSCSTCQVYLKLP Y+S E L+ +LL A+ EGQ HFALD
Sbjct: 2703 LVHVLSELDGSDRRLFMQFLTGSPRLPVGGFGELRPRLTVVRKNV----ADDPDGILPSCSTCQVYLKLPPYSSREVLKRRLLQAVREGQGHFALD 2794
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A482RGR4_9ARCH (HECT domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RGR4_9ARCH) HSP 1 Score: 99.0 bits (245), Expect = 4.390e-24 Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 1
Query: 10 LARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFALD 297
L V+ RR+F+RFITG PRLP GGF AL+P LT+V+ DA LP+CSTC VYLKLPAY+S L AKLL AI EGQ+ FA D
Sbjct: 82 LLEVLHEFSAAERRLFMRFITGAPRLPSGGFGALQPPLTIVRTAAHDREEA--DALLPTCSTCHVYLKLPAYSSKTQLRAKLLLAIREGQEVFAFD 175
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A7S1CCF7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCF7_9STRA) HSP 1 Score: 102 bits (254), Expect = 3.130e-23 Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 1 LKWLARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFAL 294
++ L V++ LDP RR FL F TG+PRLP+GGF+AL PRLT+V+K+ +P G +PDA LPS STC YLKLP YTS E + +L+ AIT+G F L
Sbjct: 2026 VQMLVEVLSDLDPVLRRQFLLFTTGSPRLPVGGFNALLPRLTIVQKK-PLP-GRSPDASLPSASTCTNYLKLPQYTSKEIMHERLVRAITDGAGAFHL 2121
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A183R5A5_9TREM (E3 ubiquitin-protein ligase n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183R5A5_9TREM) HSP 1 Score: 97.4 bits (241), Expect = 3.450e-23 Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1
Query: 1 LKWLARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFAL 294
++ L +M+ P RR+F++F+TG+PRLP+GGF AL+P L +V K G D HLPS TCQ YLKLP Y+S E + +KLL+AI EGQ+ F L
Sbjct: 108 IRLLFEIMSEFTPEQRRLFVQFVTGSPRLPVGGFRALKPPLKIVMKR---ETGENVDHHLPSVMTCQNYLKLPDYSSKELMLSKLLYAINEGQNAFHL 202
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: A0A1I8J744_9PLAT (E3 ubiquitin-protein ligase n=4 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8J744_9PLAT) HSP 1 Score: 101 bits (252), Expect = 5.810e-23 Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 1
Query: 1 LKWLARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFAL 294
++ L ++MAG D G RR FL+F+TG+PRLP+GG+ AL P LTVV K V+ PD++LPS +TC YLKLP Y+SAE + AKL A+ EGQ F L
Sbjct: 1659 IRLLFQLMAGFDLGQRRSFLQFVTGSPRLPVGGWRALHPPLTVVVKRVEGE--DNPDSYLPSATTCVNYLKLPDYSSAEVMRAKLQQAMEEGQLAFHL 1754
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: Q75DK8_ASHGO (HECT-type E3 ubiquitin transferase n=2 Tax=Eremothecium TaxID=33170 RepID=Q75DK8_ASHGO) HSP 1 Score: 101 bits (251), Expect = 7.880e-23 Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 1
Query: 10 LARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGG-TPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFAL 294
L VMA D HRR+FL+F+TG+P+LP+GGF L+P LTVV K P G +PD +LPS TC YLKLP Y+S E L A+++HAI EG F L
Sbjct: 1331 LIAVMAAFDQHHRRLFLQFLTGSPKLPVGGFKNLKPHLTVVLKH---PEGDLSPDQYLPSVMTCANYLKLPKYSSREVLRARIVHAIHEGSGAFLL 1423
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Match: UPI0018851A27 (E3 ubiquitin-protein ligase TRIP12-like n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018851A27) HSP 1 Score: 94.7 bits (234), Expect = 1.200e-22 Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 7 WLARVMAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDAHLPSCSTCQVYLKLPAYTSAEALEAKLLHAITEGQDHFAL 294
+L RV++ LD RR FL F TG+PRLP+GGF AL P LTVV+K V+ G PD +LPS TC YLKLP Y+SAE +L AI +G+ F L
Sbjct: 61 YLVRVLSRLDSQQRRHFLSFATGSPRLPVGGFRALAPPLTVVRKTVE--SGRRPDDYLPSVMTCVNYLKLPEYSSAEVTRRRLTTAINQGRLSFLL 154 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20202.5213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20202.5213.1 >prot_H-paniculata_contig20202.5213.1 ID=prot_H-paniculata_contig20202.5213.1|Name=mRNA_H-paniculata_contig20202.5213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp MAGLDPGHRRMFLRFITGTPRLPIGGFSALRPRLTVVKKEVDVPRGGTPDback to top mRNA from alignment at H-paniculata_contig20202:2106..3484- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20202.5213.1 ID=mRNA_H-paniculata_contig20202.5213.1|Name=mRNA_H-paniculata_contig20202.5213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1379bp|location=Sequence derived from alignment at H-paniculata_contig20202:2106..3484- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20202:2106..3484- >mRNA_H-paniculata_contig20202.5213.1 ID=mRNA_H-paniculata_contig20202.5213.1|Name=mRNA_H-paniculata_contig20202.5213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig20202:2106..3484- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |