mRNA_H-paniculata_contig20154.5192.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20154.5192.1
Unique NamemRNA_H-paniculata_contig20154.5192.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20154.5192.1 vs. uniprot
Match: D7FYC6_ECTSI (Aldo_ket_red domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYC6_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 6.310e-41
Identity = 71/102 (69.61%), Postives = 86/102 (84.31%), Query Frame = 3 
Query:   27 TARVSSILGTMSIPGQLDMAGAKESLECFLAAGFDMVDSAILYQGGKTETTLGEIGMEKFRVAAKANPWYKDPQTHDFFQPTHGLRPESVKEQLRHSLQTLG 332
            +A + ++LGTMSIP  LD A A+E+LE F AAGFD +D+AILYQGG TETTLGEIG+EKFRVAAKANPWYK  ++HDFF PT+GLRP+ VKEQLR S++ LG
Sbjct:   24 SASIPAVLGTMSIPEPLDTAAAREALEYFHAAGFDEIDTAILYQGGATETTLGEIGVEKFRVAAKANPWYKTDESHDFFTPTYGLRPDLVKEQLRKSIEVLG 125
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BLAST of mRNA_H-paniculata_contig20154.5192.1 vs. uniprot
Match: A0A7R7IJ70_SACJA (4-deoxy-L-erythro-5-hexoseulose uronate reductase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A7R7IJ70_SACJA)

HSP 1 Score: 128 bits (322), Expect = 1.040e-32
Identity = 66/106 (62.26%), Postives = 81/106 (76.42%), Query Frame = 3 
Query:   30 ARVSSILGTMSIPGQLDMAGAKESLECFLAAGFDMVDSAILYQGGKTETTLGEIGMEKFRVAAKANPWYKDPQTHDFFQPTHGLRPESVKEQLRHSLQTLG*TKED 347
            ARV++ILGTMSIP  LD    +++L+ F AAGF+ +D+AI+YQGGK+ETTLG++GME FRVA KANPWYKD +T  F  P  GLR +SVKEQLR SLQ L  T  D
Sbjct:   20 ARVATILGTMSIPTPLDEGATRQALQYFSAAGFEEIDTAIMYQGGKSETTLGDVGMETFRVACKANPWYKDGKT--FNDPVGGLRADSVKEQLRASLQGLRRTSVD 123
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BLAST of mRNA_H-paniculata_contig20154.5192.1 vs. uniprot
Match: A0A6H5JM03_9PHAE (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM03_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.580e-31
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 3 
Query:   36 VSSILGTMSIPGQLDMAGAKESLECFLAAGFDMVDSAILYQGGKTETTLGEIGMEKFRVAAKANPWYKDPQTHDFFQPTHGLRPESVKEQLRHSLQTLG 332
            V ++ GTMS+P  LD A  +ESLE FL AGFD +D+AILY+   TE  LG+IGM +F+VAAKANPW KD  +HDF  PT+GLRP  VKEQLR S++ LG
Sbjct:   32 VRAVFGTMSVPNLLDAAATQESLEYFLNAGFDEIDTAILYEKAGTEAALGKIGMSRFKVAAKANPWRKDDGSHDFSSPTYGLRPGLVKEQLRRSIRALG 130
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BLAST of mRNA_H-paniculata_contig20154.5192.1 vs. uniprot
Match: D7FHJ6_ECTSI (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ6_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.200e-27
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 3 
Query:   57 MSIPGQLDMAGAKESLECFLAAGFDMVDSAILYQGGKTETTLGEIGMEKFRVAAKANPWYKDPQTHDFFQPTHGLRPESVKEQLRHSLQTLG 332
            MS+P  LD    +ESLE FL AGFD VD++ILY+   TE TLG+IGM +F+VAAKANPW K+  +HDF   T+GLRP  VKEQLR S++ LG
Sbjct:    1 MSVPNLLDATATRESLEYFLNAGFDEVDTSILYEKAGTEATLGKIGMSRFKVAAKANPWRKEDGSHDFSSSTYGLRPGLVKEQLRRSIRALG 92
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BLAST of mRNA_H-paniculata_contig20154.5192.1 vs. uniprot
Match: D7G0Q1_ECTSI (Aldo-keto reductase family 7, member A2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Q1_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.660e-27
Identity = 57/91 (62.64%), Postives = 66/91 (72.53%), Query Frame = 3 
Query:   57 MSIPGQLDMAGAKESLECFLAAGFDMVDSAILYQGGKTETTLGEIGMEKFRVAAKANPWYKDPQTHDFFQPTHGLRPESVKEQLRHSLQTL 329
            MSIP  LD    +E+L+ F A GFD +D+AI+YQGGK+E TLGE GME FRVAAKANPWYKD +T D   P  GL   SVKEQLR SL +L
Sbjct:    1 MSIPAPLDAEATREALDYFAARGFDQIDTAIMYQGGKSEATLGEAGMESFRVAAKANPWYKDGKTFD--DPVGGLNAASVKEQLRASLSSL 89
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BLAST of mRNA_H-paniculata_contig20154.5192.1 vs. uniprot
Match: A0A835YS59_9STRA (Aldo-keto reductase family 7, member A2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS59_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.780e-16
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 3 
Query:   57 MSIPGQLDMAGAKESLECFLAAGFDMVDSAILYQGGKTETTLGEIGM-EKFRVAAKANPWYKDPQTHDFFQPTHGLRPESVKEQLRHSLQTL 329
            M IP  +    A E+L+ F AAG   +D+AI+YQGG+TE TLGE+ +    +VA KANPWY+D +T D   P  GL P  +KEQ+R SL+ L
Sbjct:    1 MGIPSPMTKELASEALQIFKAAGHSDLDTAIMYQGGQTEVTLGELQVGSSVKVAIKANPWYRDGKTFD--DPVAGLEPAQLKEQVRTSLKHL 90
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BLAST of mRNA_H-paniculata_contig20154.5192.1 vs. uniprot
Match: A0A6B2LA93_9EUKA (Aldo_ket_red domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LA93_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 1.690e-15
Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 3 
Query:   48 LGTMSIPGQLDMAGAKESLECFLAAGFDMVDSAILYQGGKTETTLGEIGMEKFRVAAKANPWYKDPQTHDFFQPTHGLRPESVKEQLRHSLQTLG*TKED 347
            +GTM + G LD+   +  L+ F A     +D+A+LYQGGKTE  LGE G+    VA K NPW+   +      P  GL PE+V++Q++ SL  LG  K D
Sbjct:    1 MGTMGVGGPLDVQKTRIVLDMFKAHQHQEIDTAVLYQGGKTERVLGEAGLGGLTVATKVNPWFDVNRGVSTDSPCKGLAPEAVRKQIQKSLAALGAKKVD 100
[Close]
BLAST of mRNA_H-paniculata_contig20154.5192.1 vs. uniprot
Match: A0A6H5JF57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF57_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.510e-11
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:   18 EKSTARVSSILGTMSIPGQLDMAGAKESLECFLAAGFDMVDSAILYQGGKTETTLGEI 191
            + ++ RV+++LGTMSIP  LD    +E+L+ F A GFD +D+AI+YQGGK+E TLG +
Sbjct:   62 DAASTRVATVLGTMSIPAPLDAEATREALDYFAARGFDQIDTAIMYQGGKSEATLGVL 119
[Close]
BLAST of mRNA_H-paniculata_contig20154.5192.1 vs. uniprot
Match: A0A0L0DNM4_THETB (Aflatoxin B1 aldehyde reductase member 2 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DNM4_THETB)

HSP 1 Score: 63.5 bits (153), Expect = 1.130e-8
Identity = 38/98 (38.78%), Postives = 50/98 (51.02%), Query Frame = 3 
Query:   45 ILGTMSIPGQLDMAGAKESLECFLAAGFDMVDSAILYQGGKTETTLGEIGMEK--FRVAAKANPWYKDPQTHDFFQPTHGLRPESVKEQLRHSLQTLG 332
            +LGTM++ GQ D   +   +  F  AG   VD+AI+Y  GKT   L  I       +VA K NPWY + +T   F P  GL  + V+ Q   SL  LG
Sbjct:   13 VLGTMAMGGQADQDESASMVAAFAEAGGTEVDTAIMYNMGKTHEVLAPIVASHPGLKVATKVNPWYTNYET---FAPRGGLAADQVEAQASASLAALG 107
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BLAST of mRNA_H-paniculata_contig20154.5192.1 vs. uniprot
Match: A0A5N3WW84_MUNMU (Aldo_ket_red domain-containing protein (Fragment) n=2 Tax=Pecora TaxID=35500 RepID=A0A5N3WW84_MUNMU)

HSP 1 Score: 61.2 bits (147), Expect = 1.610e-8
Identity = 37/115 (32.17%), Postives = 59/115 (51.30%), Query Frame = 3 
Query:    3 SARTEEKSTARVSSILGTMSIPGQLDMAGAKESLECFLAAGFDMVDSAILYQGGKTETTLGEIGME------KFRVAAKANPWYKDPQTHDFFQPTHGLRPESVKEQLRHSLQTL 329
            S R    S AR +++LGTM +  ++D   +  ++  FL  G   +D+A +Y  G++E+ LG +G+         ++A KANPW               LRP+S++ QL  SLQ L
Sbjct:   39 SPRAAAGSPARPATVLGTMGMGRRMDAPASAAAVRAFLERGHAELDTAFMYNDGRSESILGGLGLGLGGRDCTAKIATKANPW-----------EGKSLRPDSLRSQLETSLQRL 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20154.5192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FYC6_ECTSI6.310e-4169.61Aldo_ket_red domain-containing protein n=2 Tax=Ect... [more]
A0A7R7IJ70_SACJA1.040e-3262.264-deoxy-L-erythro-5-hexoseulose uronate reductase ... [more]
A0A6H5JM03_9PHAE1.580e-3160.61Aldo_ket_red domain-containing protein n=1 Tax=Ect... [more]
D7FHJ6_ECTSI1.200e-2759.78Aldo_ket_red domain-containing protein n=1 Tax=Ect... [more]
D7G0Q1_ECTSI1.660e-2762.64Aldo-keto reductase family 7, member A2 n=1 Tax=Ec... [more]
A0A835YS59_9STRA1.780e-1648.91Aldo-keto reductase family 7, member A2 n=1 Tax=Tr... [more]
A0A6B2LA93_9EUKA1.690e-1542.00Aldo_ket_red domain-containing protein n=1 Tax=Arc... [more]
A0A6H5JF57_9PHAE2.510e-1151.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0DNM4_THETB1.130e-838.78Aflatoxin B1 aldehyde reductase member 2 n=1 Tax=T... [more]
A0A5N3WW84_MUNMU1.610e-832.17Aldo_ket_red domain-containing protein (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20154contigH-paniculata_contig20154:576..1705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue2.2e-31
Seed eggNOG ortholog2880.D7FYC6
Preferred nameAKR7A2
KEGG rclassRC00099
KEGG koko:K15303
KEGG ReactionR09412,R09413,R09414,R09415
KEGG Pathwayko00980,map00980
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004032,GO:0004033,GO:0004301,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005975,GO:0006066,GO:0006081,GO:0006091,GO:0006725,GO:0006805,GO:0006807,GO:0008106,GO:0008150,GO:0008152,GO:0009055,GO:0009056,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009987,GO:0012505,GO:0016137,GO:0016491,GO:0016614,GO:0016616,GO:0016787,GO:0016801,GO:0016803,GO:0016999,GO:0017144,GO:0019118,GO:0019119,GO:0019748,GO:0022900,GO:0030638,GO:0030647,GO:0034308,GO:0042180,GO:0042221,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043385,GO:0043387,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044597,GO:0044598,GO:0046222,GO:0046223,GO:0046483,GO:0046700,GO:0050896,GO:0051186,GO:0051716,GO:0055114,GO:0070887,GO:0071466,GO:0071704,GO:0097164,GO:0098754,GO:1901135,GO:1901360,GO:1901361,GO:1901376,GO:1901377,GO:1901575,GO:1901615,GO:1901657,GO:1901661,GO:1902644
EggNOG free text desc.phenanthrene-epoxide hydrolase activity
EggNOG OGs2QU2T@2759,COG0667@1
Ec32 ortholog descriptionNADP-dependent oxidoreductase domain
Ec32 orthologEc-09_001320.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size539
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20154.5192.1prot_H-paniculata_contig20154.5192.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20154 632..1501 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.012087-UTR-H-paniculata_contig20154:575..6311622929518.012087-UTR-H-paniculata_contig20154:575..631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20154 576..631 +
1691480895.6431048-UTR-H-paniculata_contig20154:575..6311691480895.6431048-UTR-H-paniculata_contig20154:575..631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20154 576..631 +
1622929518.0563111-UTR-H-paniculata_contig20154:1501..17051622929518.0563111-UTR-H-paniculata_contig20154:1501..1705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20154 1502..1705 +
1691480895.673827-UTR-H-paniculata_contig20154:1501..17051691480895.673827-UTR-H-paniculata_contig20154:1501..1705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20154 1502..1705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.0240026-CDS-H-paniculata_contig20154:631..7581622929518.0240026-CDS-H-paniculata_contig20154:631..758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20154 632..758 +
1691480895.6562831-CDS-H-paniculata_contig20154:631..7581691480895.6562831-CDS-H-paniculata_contig20154:631..758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20154 632..758 +
1622929518.0415325-CDS-H-paniculata_contig20154:1349..15011622929518.0415325-CDS-H-paniculata_contig20154:1349..1501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20154 1350..1501 +
1691480895.6653109-CDS-H-paniculata_contig20154:1349..15011691480895.6653109-CDS-H-paniculata_contig20154:1349..1501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20154 1350..1501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20154.5192.1

>prot_H-paniculata_contig20154.5192.1 ID=prot_H-paniculata_contig20154.5192.1|Name=mRNA_H-paniculata_contig20154.5192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MSIPGQLDMAGAKESLECFLAAGFDMVDSAILYQGGKTETTLGEIGMEKF
RVAAKANPWYKDPQTHDFFQPTHGLRPESVKEQLRHSLQTLG*
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mRNA from alignment at H-paniculata_contig20154:576..1705+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20154.5192.1 ID=mRNA_H-paniculata_contig20154.5192.1|Name=mRNA_H-paniculata_contig20154.5192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1130bp|location=Sequence derived from alignment at H-paniculata_contig20154:576..1705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCAGCCAGAACCGAGGAAAAATCTACAGCTAGGGTTTCCAGCATTCTG
GGGACCATGTCCATTCCTGGGCAACTCGACATGGCCGGGGCGAAGGAATC
TTTGGAATGCTTCCTCGCCGCAGGGTTTGATATGGTCGATTCGGCTATTT
TATACCAGGGGGGAAAGACGGAGACAACCCTCGGTGAGTAAATCTTCGTG
TACGATTGCGTTGACCCCATTTCATAACCGAATTTCTACTGTGCTTCTTG
ACTGTAACTAGTTAAGTGCCGCATCATTATTTGGCCCTCCCGAGTGTTTC
TCCCGATTTGGTCCTGTCGAAATTTTCTTTTTGAACAATAAGTAGATAGT
AGCGTTCAACCACGATCTATTTGAATGCCTGTATCGTAGATAATATATAC
GTAGAGTGCACGGCAAACAGGCGCGATTATATCTTTGAAGTTTTTCTGAT
TTTCTAGAGCACTTATTGACTGCTGTGTCGACGAATCTCAAATCGTCTTC
GCATGCTATGCTAAGCTCTAGATTATTCAGGTAATGCAACAAGATCTGTA
AACCGAATAAGGCAGGCAAAGGCAGATCTTCTGTGTAGCACCTTGTAGCA
CCTTGCTGCACCTTCACGTAGCGCCTTAAAGAAGAACATATTATGGAGGC
TGCAGACTTGAACTTATCCCAAAATAGTGCTGAGAAGGAGATGTATTAGG
TTTTTCGTTTCGTCTCATTGTTAATCATGCGATGTGTGCGATGTACGATC
GGTCGATCGCCTTCGGTATCACAGGTGAAATTGGCATGGAAAAGTTCCGA
GTCGCGGCGAAGGCAAACCCCTGGTACAAGGACCCTCAGACCCATGACTT
TTTCCAGCCAACTCACGGCTTGAGACCGGAATCGGTAAAGGAGCAGCTGC
GCCACTCTCTCCAAACCCTCGGGTAAACGAAGGAAGATTCAACCGCTTGA
CCCATCTCCACACACATGCCCTGAACGGGCCCTAATCCCGATCTGCAGGT
GGCGGTCAGCGACCAAAACAAAAACTTATGCAAGGAAATCCAATCATCGG
TATCTTGTGGAAACCCTGATCTTAGTATCCAGTGTTTTCTTACCCTGCTT
TTTCAACTATATATATTCCCCCCCCACCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig20154:576..1705+

>mRNA_H-paniculata_contig20154.5192.1 ID=mRNA_H-paniculata_contig20154.5192.1|Name=mRNA_H-paniculata_contig20154.5192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig20154:576..1705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCATTCCTGGGCAACTCGACATGGCCGGGGCGAAGGAATCTTTGGA
ATGCTTCCTCGCCGCAGGGTTTGATATGGTCGATTCGGCTATTTTATACC
AGGGGGGAAAGACGGAGACAACCCTCGATGTCCATTCCTGGGCAACTCGA
CATGGCCGGGGCGAAGGAATCTTTGGAATGCTTCCTCGCCGCAGGGTTTG
ATATGGTCGATTCGGCTATTTTATACCAGGGGGGAAAGACGGAGACAACC
CTCGGTGAAATTGGCATGGAAAAGTTCCGAGTCGCGGCGAAGGCAAACCC
CTGGTACAAGGACCCTCAGACCCATGACTTTTTCCAGCCAACTCACGGCT
TGAGACCGGAATCGGTAAAGGAGCAGCTGCGCCACTCTCTCCAAACCCTC
GGGTAAGTGAAATTGGCATGGAAAAGTTCCGAGTCGCGGCGAAGGCAAAC
CCCTGGTACAAGGACCCTCAGACCCATGACTTTTTCCAGCCAACTCACGG
CTTGAGACCGGAATCGGTAAAGGAGCAGCTGCGCCACTCTCTCCAAACCC
TCGGGTAA
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