mRNA_H-paniculata_contig20143.5190.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: UPI000E6F524C (uncharacterized protein LOC113279956 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F524C) HSP 1 Score: 73.9 bits (180), Expect = 3.740e-15 Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 46 AMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
AM E+ L+E GT+ TELP G KA+GSKW+ T K D++G +++ KAR V GN QV G+DY++TFAP
Sbjct: 33 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGKLVRLKARLVIFGNHQVEGLDYNETFAP 101
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: UPI000E6F64D6 (uncharacterized protein LOC113273194 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F64D6) HSP 1 Score: 76.6 bits (187), Expect = 1.840e-14 Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 1
Query: 46 AMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
AM E+ L+E GT+ TELP G KA+GSKW+ T K D++G +++ KARFV GN QV G+DY++TFAP
Sbjct: 710 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGTLVRLKARFVIFGNHQVEGLDYNETFAP 778
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: UPI000E6F8969 (uncharacterized protein LOC113296259 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F8969) HSP 1 Score: 74.3 bits (181), Expect = 1.180e-13 Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 46 AMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
AM E+ L+E GT+ TELP G KA+GSKW+ T K D++G +++ KAR V GN QV G+DY++TFAP
Sbjct: 403 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGSLVRLKARLVIFGNHQVEGLDYNETFAP 471
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 73.9 bits (180), Expect = 1.580e-13 Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 46 AMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
AMD EM L+E GT+ T+LP G KA+G KW+ K D+DG +++ KAR V G Q G DYD+ FAP
Sbjct: 12 AMDDEMTSLRENGTWQLTDLPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAP 80
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: A0A6P6WUD4_COFAR (uncharacterized protein LOC113736273 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6WUD4_COFAR) HSP 1 Score: 68.9 bits (167), Expect = 3.880e-13 Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1
Query: 31 SVFLEAMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
S + EAM +E+ L++ G + LP+G KA+GSKWV K DG I + KAR V GN Q+ G+DY +TFAP
Sbjct: 33 SYWREAMRKEVEALEDNGIWTVATLPMGKKALGSKWVYKIKYHTDGTIERYKARLVVFGNYQIEGLDYTETFAP 106
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 5.750e-13 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 1 YRDVLEWKYKSVFLEAMDREMIELKEGGTFVET-ELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDY 234
Y+DV+ KYK + AM +E+ + + GTF + ELP G KAIGSKWV +WKT++ G I+ KAR V G ++ G+D+
Sbjct: 3 YKDVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDF 81
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: Q0ZCC5_POPTR (CCHC-type integrase n=1 Tax=Populus trichocarpa TaxID=3694 RepID=Q0ZCC5_POPTR) HSP 1 Score: 71.2 bits (173), Expect = 1.480e-12 Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 37 FLEAMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
+++A+ E+ ++ GT+ TELP K IG KWV K + DG I + KAR V G QVAGVDYDDTFAP
Sbjct: 1287 WIDAIKSEIDSIERNGTWKLTELPQNKKEIGVKWVFKTKFNPDGSIFRHKARLVVKGFAQVAGVDYDDTFAP 1358
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: UPI000B8A7035 (uncharacterized protein LOC110788974 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A7035) HSP 1 Score: 70.9 bits (172), Expect = 1.980e-12 Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 43 EAMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
+AM E+ L+ T+V +LP G KA+GSKWV T K D+DG +++ KAR V GN QV G DY++TFAP
Sbjct: 533 DAMAAEIEALEGQATWVLEKLPPGKKALGSKWVYTEKKDEDGNLIRNKARLVFLGNHQVEGTDYNETFAP 602
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: A0A6A5AP11_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AP11_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.050e-12 Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 58 EMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
E+ +L++ GT+ +LP+G KAIGS+W KT+ DG +++ KAR VC G QV G++Y +T++P
Sbjct: 8 ELKQLRDAGTWNIVDLPVGRKAIGSRWTYAKKTNSDGDVIRYKARLVCEGYSQVEGINYTNTYSP 72
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: A0A6H5K088_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K088_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 2.080e-12 Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 1 YRDVLEWKYKSVFLEAMDREMIELKEGGTFVET-ELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDY 234
Y+DV+ KYK + AM +E+ + GTF + ELP G KAIGSKWV +WKT++ G I+ KAR V G QV G+D+
Sbjct: 58 YKDVMCSKYKIFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARTVARGFFQVPGIDF 136 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20143.5190.1 >prot_H-paniculata_contig20143.5190.1 ID=prot_H-paniculata_contig20143.5190.1|Name=mRNA_H-paniculata_contig20143.5190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp YRDVLEWKYKSVFLEAMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWback to top mRNA from alignment at H-paniculata_contig20143:2554..2805+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20143.5190.1 ID=mRNA_H-paniculata_contig20143.5190.1|Name=mRNA_H-paniculata_contig20143.5190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig20143:2554..2805+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20143:2554..2805+ >mRNA_H-paniculata_contig20143.5190.1 ID=mRNA_H-paniculata_contig20143.5190.1|Name=mRNA_H-paniculata_contig20143.5190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig20143:2554..2805+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |