mRNA_H-paniculata_contig20117.5181.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20117.5181.1
Unique NamemRNA_H-paniculata_contig20117.5181.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20117.5181.1 vs. uniprot
Match: D8LEC4_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEC4_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.280e-30
Identity = 63/88 (71.59%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:    1 WQALVKVFTTPEIIGYPVEHQDELEADACLAVGGPELLKKCV--FFLRIVQHNIRTVAGYYKQIYTKRLAELLGLDEAQAERNVAGKI 258
            ++ LVK+FTTPEIIGYPVE+Q+ LE+D CLA GGPELL K      LRIVQHNIRTVA YYKQI TKRLA+LLGLDE QAER VA  +
Sbjct:  294 YKMLVKLFTTPEIIGYPVENQEALESDPCLAAGGPELLAKWKEDLKLRIVQHNIRTVASYYKQINTKRLADLLGLDENQAERKVADMV 381
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BLAST of mRNA_H-paniculata_contig20117.5181.1 vs. uniprot
Match: A0A6U0K3I5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0K3I5_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.920e-17
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:   13 VKVFTTPEIIGYPVEHQDELEADACLAVGGPELLK--KCVFFLRIVQHNIRTVAGYYKQIYTKRLAELLGLDEAQAERNVAGKI 258
            VK+  T EII YP ++Q ELEA +  ++GGP+L    K  F  RIVQHN+R  A YY+QI+ KRLA+LLGL+ A  E  ++  +
Sbjct:   58 VKLLLTKEIINYPFQYQAELEAMSAFSIGGPDLKAHWKKTFHTRIVQHNVRIAALYYRQIHGKRLAQLLGLEPAVLEAEISSMV 141
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BLAST of mRNA_H-paniculata_contig20117.5181.1 vs. uniprot
Match: A0A7S1ZZ80_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ80_TRICV)

HSP 1 Score: 77.0 bits (188), Expect = 1.380e-14
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   13 VKVFTTPEIIGYPVEHQDELEADACLAVGGPELLKKC--VFFLRIVQHNIRTVAGYYKQIYTKRLAELLGLDEAQAERNVAGKI 258
            VK+    EII YP+ HQ ELEA     VGGP+L      +F  RIVQHN+R  A YY++I+ +RLA+LLGL+ A+ E  ++  +
Sbjct:  340 VKLLLKKEIIHYPLPHQAELEAMPSFTVGGPDLTAHWHKIFHTRIVQHNVRVAALYYRRIHGRRLAQLLGLEPAELEAEISNMV 423
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BLAST of mRNA_H-paniculata_contig20117.5181.1 vs. uniprot
Match: F0YET2_AURAN (PCI domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YET2_AURAN)

HSP 1 Score: 75.9 bits (185), Expect = 3.440e-14
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    4 QALVKVFTTPEIIGYPV-EHQDELEADACLAVGGPE--LLKKCVFFLRIVQHNIRTVAGYYKQIYTKRLAELLGLDEAQAERNVA 249
            +AL+ +FTT EII YP+ +HQ  +E   CL   G +  L  K     R+VQHN+R VA YY+QI   RLA LLGL E +AER+V+
Sbjct:  305 KALLALFTTDEIIAYPMPDHQAAVEDHPCLKTAGDDVHLRWKKTLHTRVVQHNVRVVAKYYRQISVARLANLLGLSEDEAERHVS 389
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BLAST of mRNA_H-paniculata_contig20117.5181.1 vs. uniprot
Match: A0A1Z5J799_FISSO (26S proteasome regulatory subunit N5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J799_FISSO)

HSP 1 Score: 74.7 bits (182), Expect = 8.820e-14
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    1 WQALVKVFTTPEIIGYPVEHQDELEADACLAVGGPELLKKCVFFLRIVQHNIRTVAGYYKQIYTKRLAELLGLDEAQAERNVAGKI 258
            +QA V +F   EII YP  HQ E E+   L  G      K VFF RI+QHNIR  + YYK+I+  RLA+LL LD A  E+ +AG +
Sbjct:  312 YQATVHLFLKQEIIHYPTLHQAEWESSPALMEGDLGTHWKEVFFRRIIQHNIRVASLYYKRIHGSRLAQLLQLDVATLEQEIAGMV 397
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BLAST of mRNA_H-paniculata_contig20117.5181.1 vs. uniprot
Match: A0A835ZAZ9_9STRA (PCI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.200e-13
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    1 WQALVKVFTTPEIIGYPVEHQDELEA---DACLAVG-----GPELLKKCVFFL--RIVQHNIRTVAGYYKQIYTKRLAELLGLDEAQAERNVA 249
            ++ L+K+FTT EII YP+    ELEA   ++  A G     GP LL++ +  L  R+VQHNIR  A YYKQI T RLA LLGLDE   ER+++
Sbjct:  293 YKTLLKLFTTYEIIDYPLPFAAELEAHIKESIAATGTDPELGPPLLEQWLKDLHTRVVQHNIRVAAKYYKQIRTARLATLLGLDEGTTERSLS 385
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BLAST of mRNA_H-paniculata_contig20117.5181.1 vs. uniprot
Match: A0A6V2BEV7_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BEV7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.660e-13
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:   13 VKVFTTPEIIGYPVEHQDELEADACLAVGGPELLK--KCVFFLRIVQHNIRTVAGYYKQIYTKRLAELLGLDEAQAERNVAGKI 258
            +K+    EII +P+ HQ ELE+     +GG EL    +  F  RIVQHN+R  A YY++I+ KRLA+LLGL  A+ E  +A  +
Sbjct:  318 LKLLLRKEIINFPLPHQTELESMGAFTIGGDELTSHWRKTFHTRIVQHNVRVAALYYRRIHGKRLAQLLGLKPAELEAEIASMV 401
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BLAST of mRNA_H-paniculata_contig20117.5181.1 vs. uniprot
Match: A0A7S2V6L0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6L0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.260e-13
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   10 LVKVFTTPEIIGYPVEHQDELEADACLAVGGPELL-KKCVFFLRI--VQHNIRTVAGYYKQIYTKRLAELLGLDEAQAERNVA 249
            L  VFTT ++IGYP++ Q +LEA  CLA   P  L +K    LR   VQH+IR V+ YYK+I  +RLAELLGLD  Q E +++
Sbjct:  294 LTTVFTTQQVIGYPLQGQQDLEAHPCLARHAPPTLPQKWAQQLRTRTVQHSIRVVSKYYKRIRMQRLAELLGLDVPQTESHLS 376
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BLAST of mRNA_H-paniculata_contig20117.5181.1 vs. uniprot
Match: A0A7S4EB77_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EB77_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.700e-12
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   10 LVKVFTTPEIIGYPV--EHQDELEADACLAVGGPELLKKCVFFLR--IVQHNIRTVAGYYKQIYTKRLAELLGLDEAQAERNVAGKI 258
            L+ +FTT EI+ YP+  EHQ  +EA   L   G E+ ++    LR  ++QHNIR V+GYY+Q+   RLA LLGL   +AE++V+  +
Sbjct:  153 LLTLFTTQEIVAYPLTEEHQRAVEAHPALHTAGAEIHQRWKNTLRERVIQHNIRVVSGYYRQLSMARLANLLGLSVDEAEKHVSDMV 239
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BLAST of mRNA_H-paniculata_contig20117.5181.1 vs. uniprot
Match: A0A7S4A230_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A230_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.770e-12
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   10 LVKVFTTPEIIGYPV--EHQDELEADACLAVGGPELLKKCVFFLR--IVQHNIRTVAGYYKQIYTKRLAELLGLDEAQAERNVAGKI 258
            L+ +FTT EI+ YP+  EHQ  +EA   L   G E+ ++    LR  ++QHNIR V+GYY+Q+   RLA LLGL   +AE++V+  +
Sbjct:  306 LLTLFTTQEIVAYPLTEEHQRAVEAHPALHTAGAEIHQRWKNTLRERVIQHNIRVVSGYYRQLSMARLANLLGLSVDEAEKHVSDMV 392
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20117.5181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEC4_ECTSI1.280e-3071.59PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6U0K3I5_9STRA6.920e-1748.81Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1ZZ80_TRICV1.380e-1446.43Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
F0YET2_AURAN3.440e-1449.41PCI domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A1Z5J799_FISSO8.820e-1447.6726S proteasome regulatory subunit N5 n=2 Tax=Fistu... [more]
A0A835ZAZ9_9STRA1.200e-1349.46PCI domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6V2BEV7_9STRA1.660e-1344.05Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S2V6L0_9STRA4.260e-1350.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4EB77_9STRA1.700e-1243.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A230_9STRA2.770e-1243.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20117contigH-paniculata_contig20117:3501..4274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog2880.D8LEC4
Preferred namePSMD12
KEGG koko:K03035
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000338,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007088,GO:0007275,GO:0007346,GO:0008021,GO:0008150,GO:0008152,GO:0008180,GO:0008541,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016192,GO:0016579,GO:0016604,GO:0016607,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030071,GO:0030133,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044456,GO:0044464,GO:0045055,GO:0045202,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070382,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:0097458,GO:0097708,GO:0098793,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsCOG5071@1,KOG1498@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.156248-CDS-H-paniculata_contig20117:3500..36261622929517.156248-CDS-H-paniculata_contig20117:3500..3626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20117 3501..3626 -
1691480895.3238919-CDS-H-paniculata_contig20117:3500..36261691480895.3238919-CDS-H-paniculata_contig20117:3500..3626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20117 3501..3626 -
1622929517.1723804-CDS-H-paniculata_contig20117:4142..42741622929517.1723804-CDS-H-paniculata_contig20117:4142..4274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20117 4143..4274 -
1691480895.3336434-CDS-H-paniculata_contig20117:4142..42741691480895.3336434-CDS-H-paniculata_contig20117:4142..4274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20117 4143..4274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20117.5181.1prot_H-paniculata_contig20117.5181.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20117 3501..4274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20117.5181.1

>prot_H-paniculata_contig20117.5181.1 ID=prot_H-paniculata_contig20117.5181.1|Name=mRNA_H-paniculata_contig20117.5181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
WQALVKVFTTPEIIGYPVEHQDELEADACLAVGGPELLKKCVFFLRIVQH
NIRTVAGYYKQIYTKRLAELLGLDEAQAERNVAGKI
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mRNA from alignment at H-paniculata_contig20117:3501..4274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20117.5181.1 ID=mRNA_H-paniculata_contig20117.5181.1|Name=mRNA_H-paniculata_contig20117.5181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=774bp|location=Sequence derived from alignment at H-paniculata_contig20117:3501..4274- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCAGGCGCTGGTTAAGGTATTCACGACACCTGAGATCATCGGCTACCC
TGTCGAGCACCAGGATGAGCTGGAGGCAGATGCGTGCTTGGCCGTCGGTG
GACCGGAGCTGTTAAAGAAGTGCGTTTTTTTTGTTTTTTTTTGTGGATAT
ATATTCTCTCTGTTCTCTTGCCTTTTTGTAAAGAGTATCTATACTATATA
TATATATATATAGTTGGGTTTTTCACCTAATTGGTTTTTACCGTATTATA
AATCACGACATAAAATTCATGTTTTTTTGTTTTGTTTTGTTTTTCCTTAG
TAAGTGCACGTGTCATGTGAAGGAGTTTGTCTTGAAGCCTCGATCATCAG
GGCGTGATTCCTTTTTCTCCCTTGTGTTGATGTGCACATTTGTATTCTAG
TTTTGTTGGATGATTATGCGGGCCTTTGACTTGGGAGATAAAACCAGCCG
CATGAACGTCAGATCATCAACTATGCTCAAATTAGCCGACAAACAAACCG
TCTTGTGTGTGTGTTTTTTTTTGTATGTTCTGCACATATCTGCTTTTTTG
CTTTGTCATGAAGCCTTACCCCCCTCCCTCCCCCCTGTGTCCCTTTTATT
TTTTTATTGCTTTTGTTCAAACCAACAAGATGGAAGGCGGACTTGAAGCT
GCGCATCGTTCAACACAACATCCGAACGGTAGCGGGCTACTACAAACAGA
TCTACACCAAGCGGCTCGCCGAGTTGCTGGGCCTAGACGAGGCACAGGCC
GAGCGGAACGTAGCCGGTAAGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig20117:3501..4274-

>mRNA_H-paniculata_contig20117.5181.1 ID=mRNA_H-paniculata_contig20117.5181.1|Name=mRNA_H-paniculata_contig20117.5181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig20117:3501..4274- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCAGGCGCTGGTTAAGGTATTCACGACACCTGAGATCATCGGCTACCC
TGTCGAGCACCAGGATGAGCTGGAGGCAGATGCGTGCTTGGCCGTCGGTG
GACCGGAGCTGTTAAAGAAGTGCGTTTTTTTTTGGCAGGCGCTGGTTAAG
GTATTCACGACACCTGAGATCATCGGCTACCCTGTCGAGCACCAGGATGA
GCTGGAGGCAGATGCGTGCTTGGCCGTCGGTGGACCGGAGCTGTTAAAGA
AGTGCGTTTTTTTTCTGCGCATCGTTCAACACAACATCCGAACGGTAGCG
GGCTACTACAAACAGATCTACACCAAGCGGCTCGCCGAGTTGCTGGGCCT
AGACGAGGCACAGGCCGAGCGGAACGTAGCCGGTAAGATTCTGCGCATCG
TTCAACACAACATCCGAACGGTAGCGGGCTACTACAAACAGATCTACACC
AAGCGGCTCGCCGAGTTGCTGGGCCTAGACGAGGCACAGGCCGAGCGGAA
CGTAGCCGGTAAGATT
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