mRNA_H-paniculata_contig20103.5178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20103.5178.1
Unique NamemRNA_H-paniculata_contig20103.5178.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20103.5178.1 vs. uniprot
Match: A0A6H5KRN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.270e-13
Identity = 70/143 (48.95%), Postives = 78/143 (54.55%), Query Frame = 1 
Query:    1 LCNSIGCPNGFIPIP----------------------------------DAQTTECDNGSCSVDQCCVDQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLCNSIGCPNGFIPIPNAQSTVCNDDPCSVDQCCDA 327
            LCNSIGCP+GF PIP                                  DA TT C+N +C+ +QCCV  NXXXXXXXXXXXX   XXXXXXXXXXX          L CNSIGCP G+ PIPNA    C+ D C V QCC+A
Sbjct:   15 LCNSIGCPDGFTPIPYAWEVECGDSCDVATCCEAFXXXXXXXXXXXXXEDAGTTRCNNDNCTTEQCCVSGNXXXXXXXXXXXXGGNXXXXXXXXXXXV---------LYCNSIGCPGGYTPIPNAWEVECSGDSCEVSQCCEA 148
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BLAST of mRNA_H-paniculata_contig20103.5178.1 vs. uniprot
Match: D7G5E9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E9_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 7.150e-12
Identity = 51/124 (41.13%), Postives = 55/124 (44.35%), Query Frame = 1 
Query:    1 LCNSIGCPNGFIPIPDAQTTECDNGSCSVDQCC---------------VDQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLCNSIGCPNGFIPIPNAQSTVCNDDPCSVDQCCDA 327
            LCNSIGCP GF PIP+A   EC + SC V  CC                                             XXXXXXX   L CNSIGCP G+ PIPNA    C DD C V QCC+A
Sbjct:   40 LCNSIGCPGGFTPIPNAWEVECGH-SCDVATCCEXXXXXXXXXXXXXXXXXXGTTRCTDDYCTTPQCCVSGNTRKGEQXXXXXXXAGGLYCNSIGCPGGYTPIPNAWEVECYDDSCEVSQCCEA 162
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BLAST of mRNA_H-paniculata_contig20103.5178.1 vs. uniprot
Match: A0A6H5JPS1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.030e-8
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:  226 CNSIGCPNGFIPIPNAQSTVCNDDPCSVDQCCDA 327
            CNSIGCP G+ PIPNA    C+DDPC V QCC+A
Sbjct:    8 CNSIGCPGGYTPIPNAWEVECDDDPCEVSQCCEA 41
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BLAST of mRNA_H-paniculata_contig20103.5178.1 vs. uniprot
Match: D8LDW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDW8_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.850e-6
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 LCNSIGCPNGFIPIPDAQTTECDNGSCSVDQCC 99
            +C+SIGCP+G+IPIPD  TTEC  G C+V+ CC
Sbjct:   59 MCSSIGCPDGYIPIPDHDTTECPGGDCTVEACC 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20103.5178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KRN6_9PHAE1.270e-1348.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5E9_ECTSI7.150e-1241.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPS1_9PHAE2.030e-867.65Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LDW8_ECTSI2.850e-663.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20103contigH-paniculata_contig20103:3940..4479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size540
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929516.7805471-CDS-H-paniculata_contig20103:3939..44791622929516.7805471-CDS-H-paniculata_contig20103:3939..4479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20103 3940..4479 -
1691480895.222037-CDS-H-paniculata_contig20103:3939..44791691480895.222037-CDS-H-paniculata_contig20103:3939..4479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20103 3940..4479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20103.5178.1prot_H-paniculata_contig20103.5178.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20103 3940..4479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20103.5178.1

>prot_H-paniculata_contig20103.5178.1 ID=prot_H-paniculata_contig20103.5178.1|Name=mRNA_H-paniculata_contig20103.5178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
LCNSIGCPNGFIPIPDAQTTECDNGSCSVDQCCVDQNNGGGGGGGGGGGG
GGGGGGGGGGGGGDGGGGGGGGGLLCNSIGCPNGFIPIPNAQSTVCNDDP
CSVDQCCDAFCSSFACPNGLTPIPDAQNVQCTDDMCTQQQCCQALCSGFG
CPNGFQPIPGAQHVQCTDQICTTEQCCEP*
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mRNA from alignment at H-paniculata_contig20103:3940..4479-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20103.5178.1 ID=mRNA_H-paniculata_contig20103.5178.1|Name=mRNA_H-paniculata_contig20103.5178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=540bp|location=Sequence derived from alignment at H-paniculata_contig20103:3940..4479- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGCAACTCCATCGGATGCCCGAACGGCTTCATCCCCATCCCGGACGC
CCAAACCACCGAGTGCGATAACGGTTCGTGCTCGGTCGATCAATGTTGTG
TAGACCAAAACAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGT
GGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCGACGGTGGCGG
TGGTGGCGGTGGCGGCGGCCTGCTGTGCAATTCCATCGGATGCCCGAATG
GATTTATCCCGATCCCGAACGCGCAGAGCACCGTATGCAACGATGATCCC
TGCTCGGTTGATCAGTGCTGCGACGCCTTCTGCTCCTCCTTCGCATGCCC
CAACGGTCTCACGCCAATCCCAGATGCCCAGAACGTCCAGTGCACTGACG
ACATGTGCACCCAGCAGCAGTGCTGCCAGGCTTTGTGCTCGGGCTTCGGT
TGTCCCAATGGCTTCCAGCCTATCCCGGGAGCACAGCACGTTCAGTGTAC
CGATCAGATCTGCACTACTGAGCAGTGCTGTGAGCCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20103:3940..4479-

>mRNA_H-paniculata_contig20103.5178.1 ID=mRNA_H-paniculata_contig20103.5178.1|Name=mRNA_H-paniculata_contig20103.5178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig20103:3940..4479- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGCAACTCCATCGGATGCCCGAACGGCTTCATCCCCATCCCGGACGC
CCAAACCACCGAGTGCGATAACGGTTCGTGCTCGGTCGATCAATGTTGTG
TAGACCAAAACAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGT
GGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCGACGGTGGCGG
TGGTGGCGGTGGCGGCGGCCTGCTGTGCAATTCCATCGGATGCCCGAATG
GATTTATCCCGATCCCGAACGCGCAGAGCACCGTATGCAACGATGATCCC
TGCTCGGTTGATCAGTGCTGCGACGCCTTCTGCTCCTCCTTCGCATGCCC
CAACGGTCTCACGCCAATCCCAGATGCCCAGAACGTCCAGTGCACTGACG
ACATGTGCACCCAGCAGCAGTGCTGCCAGGCTTTGTGCTCGGGCTTCGGT
TGTCCCAATGGCTTCCAGCCTATCCCGGGAGCACAGCACGTTCAGTGTAC
CGATCAGATCTGCACTACTGAGCAGTGCTGTGAGCCATGACTTTGCAACT
CCATCGGATGCCCGAACGGCTTCATCCCCATCCCGGACGCCCAAACCACC
GAGTGCGATAACGGTTCGTGCTCGGTCGATCAATGTTGTGTAGACCAAAA
CAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTGGTG
GTGGTGGTGGTGGTGGTGGTGGTGGCGGCGACGGTGGCGGTGGTGGCGGT
GGCGGCGGCCTGCTGTGCAATTCCATCGGATGCCCGAATGGATTTATCCC
GATCCCGAACGCGCAGAGCACCGTATGCAACGATGATCCCTGCTCGGTTG
ATCAGTGCTGCGACGCCTTCTGCTCCTCCTTCGCATGCCCCAACGGTCTC
ACGCCAATCCCAGATGCCCAGAACGTCCAGTGCACTGACGACATGTGCAC
CCAGCAGCAGTGCTGCCAGGCTTTGTGCTCGGGCTTCGGTTGTCCCAATG
GCTTCCAGCCTATCCCGGGAGCACAGCACGTTCAGTGTACCGATCAGATC
TGCACTACTGAGCAGTGCTGTGAGCCATGA
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