mRNA_H-paniculata_contig20043.5153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20043.5153.1
Unique NamemRNA_H-paniculata_contig20043.5153.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20043.5153.1 vs. uniprot
Match: A0A6H5L2M1_9PHAE (Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2M1_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 1.490e-98
Identity = 152/176 (86.36%), Postives = 163/176 (92.61%), Query Frame = 1 
Query:    1 RKLVVATDLVETVSAKVGLEEGDTLKVLATLPGKDLVGTRYQHPLCERISEVVVGGDYITTEAGTGLVHTAPGHGQEDYVTGLKYGLPLLSPVDDAGKFTAEAGERFAGLSVLKEGNEEVLTALGEAGGLLAKEAYSHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALDAINKV 528
            RKL+VATDLV  VSAK+GLEEGDTLKV+ T  GKDL+GT+YQHPLC+R+SEVV+GGDYITTE GTGLVHTAPGHGQEDYVTG KYGLPLLSPVDDAGKFTAEAG+RF GL+VLKEGNEEVL AL EAGGLLA+EAY HKYPYDWRTKKPTIFRATDQWFASVDRFRDTAL AI KV
Sbjct:  375 RKLLVATDLVGAVSAKIGLEEGDTLKVVETFTGKDLIGTKYQHPLCDRVSEVVIGGDYITTETGTGLVHTAPGHGQEDYVTGQKYGLPLLSPVDDAGKFTAEAGDRFKGLNVLKEGNEEVLVALEEAGGLLAREAYQHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALSAIEKV 550
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BLAST of mRNA_H-paniculata_contig20043.5153.1 vs. uniprot
Match: A0A7S2XYB8_9STRA (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYB8_9STRA)

HSP 1 Score: 272 bits (695), Expect = 2.980e-88
Identity = 133/176 (75.57%), Postives = 151/176 (85.80%), Query Frame = 1 
Query:    1 RKLVVATDLVETVSAKVGLEEGDTLKVLATLPGKDLVGTRYQHPLCERISEVVVGGDYITTEAGTGLVHTAPGHGQEDYVTGLKYGLPLLSPVDDAGKFTAEAGERFAGLSVLKEGNEEVLTALGEAGGLLAKEAYSHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALDAINKV 528
            ++++VA  LV+T+SAK+GLEEG  L+V  TL GKDL GT+Y H +CER SEVV+GGDYITT++GTGLVHTAPGHGQEDY TGLKYGLPLLSPVDDAGKFTAEAGERF GLSVL +GN EV+ AL E G LL  E Y+HKYPYDWRTKKPTIFRATDQWFASVD FRD A+ AI+KV
Sbjct:   94 QRMLVAKGLVDTMSAKLGLEEGQGLEVEGTLLGKDLAGTKYFHSVCERESEVVIGGDYITTDSGTGLVHTAPGHGQEDYQTGLKYGLPLLSPVDDAGKFTAEAGERFQGLSVLGDGNTEVIAALEEKGSLLLGEDYNHKYPYDWRTKKPTIFRATDQWFASVDSFRDDAMAAIDKV 269
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BLAST of mRNA_H-paniculata_contig20043.5153.1 vs. uniprot
Match: A0A7S4ERA1_9STRA (Isoleucine--tRNA ligase n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A7S4ERA1_9STRA)

HSP 1 Score: 263 bits (672), Expect = 4.540e-79
Identity = 126/175 (72.00%), Postives = 149/175 (85.14%), Query Frame = 1 
Query:    4 KLVVATDLVETVSAKVGLEEGDTLKVLATLPGKDLVGTRYQHPLCERISEVVVGGDYITTEAGTGLVHTAPGHGQEDYVTGLKYGLPLLSPVDDAGKFTAEAGERFAGLSVLKEGNEEVLTALGEAGGLLAKEAYSHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALDAINKV 528
            KLVVATDLVET+++KVGL EG++ +++ATLPG DLVGT Y HPL +R S V+ GGDYITTE+GTGLVHTAPGHGQEDY+TGLK GL LLSPVDD+G+FT EAGE F GL+VLKEGN+ ++ AL   G LL  E Y HKYPYDWRTKKPTIFRATDQWFASV+ FRD+AL+A++ V
Sbjct:  328 KLVVATDLVETIASKVGLPEGESFEIVATLPGSDLVGTMYTHPLYDRNSPVLEGGDYITTESGTGLVHTAPGHGQEDYLTGLKNGLELLSPVDDSGRFTIEAGEEFKGLNVLKEGNQAMIDALTAKGALLKVEDYGHKYPYDWRTKKPTIFRATDQWFASVEGFRDSALEAVDTV 502
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BLAST of mRNA_H-paniculata_contig20043.5153.1 vs. uniprot
Match: A0A7S0LI09_9EUKA (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LI09_9EUKA)

HSP 1 Score: 260 bits (665), Expect = 3.210e-78
Identity = 127/175 (72.57%), Postives = 143/175 (81.71%), Query Frame = 1 
Query:    4 KLVVATDLVETVSAKVGLEEGDTLKVLATLPGKDLVGTRYQHPLCERISEVVVGGDYITTEAGTGLVHTAPGHGQEDYVTGLKYGLPLLSPVDDAGKFTAEAGERFAGLSVLKEGNEEVLTALGEAGGLLAKEAYSHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALDAINKV 528
            KLVVA+DLV +V+ ++ L EG+ L  +A L G DL  + Y+HPL ER S+VV+GGDYITTE+GTGLVHTAPGHGQEDY+TG KYGLPLLSPVDDAGKFT EAGE F GLSVL +GN  V+TAL EAG LLA E Y+HKYPYDWRTKKPTIFRAT QWFASVD FRD AL AI  V
Sbjct:  314 KLVVASDLVSSVAGRLSLPEGEELSTIAVLSGADLEKSVYKHPLYERTSQVVIGGDYITTESGTGLVHTAPGHGQEDYITGQKYGLPLLSPVDDAGKFTTEAGEPFVGLSVLGDGNTAVITALQEAGALLASEGYAHKYPYDWRTKKPTIFRATSQWFASVDAFRDDALSAIESV 488
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BLAST of mRNA_H-paniculata_contig20043.5153.1 vs. uniprot
Match: A0A7S2A607_TRICV (Isoleucine--tRNA ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A607_TRICV)

HSP 1 Score: 255 bits (651), Expect = 7.900e-78
Identity = 122/175 (69.71%), Postives = 142/175 (81.14%), Query Frame = 1 
Query:    4 KLVVATDLVETVSAKVGLEEGDTLKVLATLPGKDLVGTRYQHPLCERISEVVVGGDYITTEAGTGLVHTAPGHGQEDYVTGLKYGLPLLSPVDDAGKFTAEAGERFAGLSVLKEGNEEVLTALGEAGGLLAKEAYSHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALDAINKV 528
            +L+VATDL E +++K  L EG+T  +LAT+PG D+VGT Y HPL  R S V+ GGDYITTE+GTGLVHTAPGHGQEDY+TGLK+GL LLSPV+DAG+FT EAGE F G+SVL EGN  V+ AL E G LL  E Y HKYPYDWRTKKPTIFRATDQWFASV+ FRD ALDA++ V
Sbjct:   25 RLLVATDLAENLASKFNLPEGETFTILATMPGSDVVGTTYNHPLYPRTSPVLAGGDYITTESGTGLVHTAPGHGQEDYLTGLKHGLDLLSPVNDAGQFTKEAGEMFEGMSVLGEGNTAVVDALAETGSLLLAEDYGHKYPYDWRTKKPTIFRATDQWFASVEGFRDEALDAVDTV 199
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BLAST of mRNA_H-paniculata_contig20043.5153.1 vs. uniprot
Match: A0A7S1ZYZ0_9STRA (Isoleucine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZYZ0_9STRA)

HSP 1 Score: 259 bits (662), Expect = 1.330e-77
Identity = 124/175 (70.86%), Postives = 145/175 (82.86%), Query Frame = 1 
Query:    4 KLVVATDLVETVSAKVGLEEGDTLKVLATLPGKDLVGTRYQHPLCERISEVVVGGDYITTEAGTGLVHTAPGHGQEDYVTGLKYGLPLLSPVDDAGKFTAEAGERFAGLSVLKEGNEEVLTALGEAGGLLAKEAYSHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALDAINKV 528
            +L+VA DL E+++ K  L EG+ L +LAT+ G +++GT Y HPL +R S V+ GGDYITTE+GTGLVHTAPGHGQEDY+TGLK GL LLSPVDD G+FT EAGERFAG++VLKEGNEEV+TAL E G LL  E Y HKYPYDWRTKKPTIFRATDQWFASV+ FRD ALDAI+ V
Sbjct:  342 RLLVAADLAESLATKFELPEGEKLSILATMKGSEIIGTTYSHPLYDRKSPVLAGGDYITTESGTGLVHTAPGHGQEDYLTGLKAGLDLLSPVDDLGRFTIEAGERFAGMNVLKEGNEEVVTALQETGSLLRAEDYGHKYPYDWRTKKPTIFRATDQWFASVEGFRDAALDAIDTV 516
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BLAST of mRNA_H-paniculata_contig20043.5153.1 vs. uniprot
Match: A0A1Z5JP77_FISSO (Isoleucine--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP77_FISSO)

HSP 1 Score: 254 bits (650), Expect = 5.360e-76
Identity = 124/175 (70.86%), Postives = 139/175 (79.43%), Query Frame = 1 
Query:    4 KLVVATDLVETVSAKVGLEEGDTLKVLATLPGKDLVGTRYQHPLCERISEVVVGGDYITTEAGTGLVHTAPGHGQEDYVTGLKYGLPLLSPVDDAGKFTAEAGERFAGLSVLKEGNEEVLTALGEAGGLLAKEAYSHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALDAINKV 528
            KL+VATDL ET++ K  L EG+   V  T  G DLVGT YQHPL ER S V+ GGDYITTE+GTGLVHTAPGHGQEDY+TGLK GL +LSPVDD GKFTA+AGE+F GLSVL EGN+ ++ AL E G LL  E Y HKYPYDWRTKKPTIFRATDQWFASV  FRD+AL AI+ V
Sbjct:  318 KLLVATDLAETLAKKFALPEGEVFDVRGTFQGSDLVGTTYQHPLYERRSPVLAGGDYITTESGTGLVHTAPGHGQEDYLTGLKNGLEILSPVDDVGKFTADAGEKFVGLSVLAEGNQAIIDALAETGALLKAEDYGHKYPYDWRTKKPTIFRATDQWFASVQGFRDSALKAIDTV 492
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BLAST of mRNA_H-paniculata_contig20043.5153.1 vs. uniprot
Match: A0A7S3HPS4_9STRA (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPS4_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.620e-75
Identity = 122/175 (69.71%), Postives = 145/175 (82.86%), Query Frame = 1 
Query:   10 VVATDLVETVSAKVGLE--EGDTLKVLATLPGKDLVGTRYQHPLCERISEVVVGGDYITTEAGTGLVHTAPGHGQEDYVTGLKYGLPLLSPVDDAGKFTAEAGERFAGLSVLKEGNEEVLTALGEAGGLLAKEAYSHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALDAINKV 528
            +V   LVE++SAK+GL+  EG  L++   L G+DLVG++YQHPLCER+SEVV+GGDYI  E+GTGLVHTAPGHGQEDY+TGLKY LPLLSPV+D GKFT EAGERF GL VLKEGN  V+ AL EAG L+ +E YSHKYPYDWR+KKPTIFRAT+QWFASV  FR+  L AI++V
Sbjct:  331 LVGLPLVESLSAKLGLDIKEGHKLQISTVLKGEDLVGSKYQHPLCERVSEVVLGGDYINMESGTGLVHTAPGHGQEDYLTGLKYNLPLLSPVNDLGKFTVEAGERFVGLDVLKEGNVAVIKALEEAGVLIKEEPYSHKYPYDWRSKKPTIFRATEQWFASVSTFREATLQAIDQV 505
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BLAST of mRNA_H-paniculata_contig20043.5153.1 vs. uniprot
Match: B7FRF4_PHATC (Isoleucine--tRNA ligase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRF4_PHATC)

HSP 1 Score: 253 bits (646), Expect = 2.210e-75
Identity = 123/175 (70.29%), Postives = 141/175 (80.57%), Query Frame = 1 
Query:    4 KLVVATDLVETVSAKVGLEEGDTLKVLATLPGKDLVGTRYQHPLCERISEVVVGGDYITTEAGTGLVHTAPGHGQEDYVTGLKYGLPLLSPVDDAGKFTAEAGERFAGLSVLKEGNEEVLTALGEAGGLLAKEAYSHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALDAINKV 528
            KL+VATDL  +++ K  L E +TL +LAT PGKDLVGT Y+HP+ +R S V+ GGDYITTE+GTGLVHTAPGHGQEDY+TGLK GL +LSPVDD GKFT EAGER+ G+ VL EGN  ++ AL EAG LL  E Y HKYPYDWRTKKPTIFRATDQWFASV  FRD ALDA+ KV
Sbjct:  330 KLLVATDLASSLARKFDLPEDETLDILATFPGKDLVGTIYKHPMYDRKSPVLAGGDYITTESGTGLVHTAPGHGQEDYLTGLKNGLEILSPVDDVGKFTIEAGERYVGMRVLAEGNLAMIDALQEAGSLLKAEDYGHKYPYDWRTKKPTIFRATDQWFASVAGFRDQALDAVEKV 504
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BLAST of mRNA_H-paniculata_contig20043.5153.1 vs. uniprot
Match: A0A7S0M4Z3_9CRYP (Isoleucine--tRNA ligase (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M4Z3_9CRYP)

HSP 1 Score: 243 bits (620), Expect = 3.930e-75
Identity = 122/178 (68.54%), Postives = 139/178 (78.09%), Query Frame = 1 
Query:    1 RKLVVATDLVETVSAKVGL--EEGDTLKVLATLPGKDLVGTRYQHPLCERISEVVVGGDYITTEAGTGLVHTAPGHGQEDYVTGLKYGLPLLSPVDDAGKFTAEAGERFAGLSVLKEGNEEVLTALGEAGGLLAKEAYSHKYPYDWRTKKPTIFRATDQWFASVDRFRDTALDAINKV 528
            R LVVA DLVE V +K+    EEG  L+VL TL G +L GTRY+HPL +R   VVVGGDYITTE GTGLVHTAPGHG EDY TGLKYGL LLSPVDDAG+FTAEAG    G  VL +GN+ VL  +G+AG LL +EAY HKYPYDWRTKKPTIFRATDQWFASV+ FR  A++A++ V
Sbjct:   30 RLLVVAKDLVEAVGSKMAAPGEEGAGLRVLGTLTGAELAGTRYKHPLYDREGPVVVGGDYITTETGTGLVHTAPGHGVEDYQTGLKYGLALLSPVDDAGRFTAEAGPALEGKDVLADGNQAVLELMGQAGALLKEEAYGHKYPYDWRTKKPTIFRATDQWFASVESFRKQAVEAVDGV 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20043.5153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2M1_9PHAE1.490e-9886.36Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XYB8_9STRA2.980e-8875.57Isoleucine--tRNA ligase (Fragment) n=1 Tax=Fibroca... [more]
A0A7S4ERA1_9STRA4.540e-7972.00Isoleucine--tRNA ligase n=2 Tax=Pseudo-nitzschia T... [more]
A0A7S0LI09_9EUKA3.210e-7872.57Isoleucine--tRNA ligase (Fragment) n=1 Tax=Coccoli... [more]
A0A7S2A607_TRICV7.900e-7869.71Isoleucine--tRNA ligase n=1 Tax=Trieres chinensis ... [more]
A0A7S1ZYZ0_9STRA1.330e-7770.86Isoleucine--tRNA ligase n=1 Tax=Ditylum brightwell... [more]
A0A1Z5JP77_FISSO5.360e-7670.86Isoleucine--tRNA ligase n=2 Tax=Fistulifera solari... [more]
A0A7S3HPS4_9STRA1.620e-7569.71Isoleucine--tRNA ligase (Fragment) n=1 Tax=Spumell... [more]
B7FRF4_PHATC2.210e-7570.29Isoleucine--tRNA ligase n=2 Tax=Phaeodactylum tric... [more]
A0A7S0M4Z3_9CRYP3.930e-7568.54Isoleucine--tRNA ligase (Fragment) n=1 Tax=Cryptom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20043contigH-paniculata_contig20043:313..3875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.4
Seed ortholog evalue6.4e-64
Seed eggNOG ortholog2850.Phatr17198
Preferred nameISM1
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K18171
KEGG ReactionR03656
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000959,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0022414,GO:0030554,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035670,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0061458,GO:0070127,GO:0070152,GO:0071704,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0099402,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Belongs to the class-I aminoacyl-tRNA synthetase family
EggNOG OGs2XBBT@2836,COG0060@1,KOG0433@2759
EC6.1.1.5
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Exons3
Model size528
Cds size528
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20043.5153.1prot_H-paniculata_contig20043.5153.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20043 313..3875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929513.1401958-CDS-H-paniculata_contig20043:312..4981622929513.1401958-CDS-H-paniculata_contig20043:312..498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20043 313..498 -
1691480893.4942899-CDS-H-paniculata_contig20043:312..4981691480893.4942899-CDS-H-paniculata_contig20043:312..498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20043 313..498 -
1622929513.155074-CDS-H-paniculata_contig20043:1870..20931622929513.155074-CDS-H-paniculata_contig20043:1870..2093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20043 1871..2093 -
1691480893.507869-CDS-H-paniculata_contig20043:1870..20931691480893.507869-CDS-H-paniculata_contig20043:1870..2093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20043 1871..2093 -
1622929513.1658587-CDS-H-paniculata_contig20043:3756..38751622929513.1658587-CDS-H-paniculata_contig20043:3756..3875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20043 3757..3875 -
1691480893.5170596-CDS-H-paniculata_contig20043:3756..38751691480893.5170596-CDS-H-paniculata_contig20043:3756..3875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20043 3757..3875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20043.5153.1

>prot_H-paniculata_contig20043.5153.1 ID=prot_H-paniculata_contig20043.5153.1|Name=mRNA_H-paniculata_contig20043.5153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
RKLVVATDLVETVSAKVGLEEGDTLKVLATLPGKDLVGTRYQHPLCERIS
EVVVGGDYITTEAGTGLVHTAPGHGQEDYVTGLKYGLPLLSPVDDAGKFT
AEAGERFAGLSVLKEGNEEVLTALGEAGGLLAKEAYSHKYPYDWRTKKPT
IFRATDQWFASVDRFRDTALDAINKV
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mRNA from alignment at H-paniculata_contig20043:313..3875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20043.5153.1 ID=mRNA_H-paniculata_contig20043.5153.1|Name=mRNA_H-paniculata_contig20043.5153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3563bp|location=Sequence derived from alignment at H-paniculata_contig20043:313..3875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGCTTGTCGTAGCGACGGACCTCGTAGAGACCGTAAGCGCAAAAGT
CGGACTGGAGGAAGGCGATACTCTAAAGGTGCTGGCTACCCTACCCGGAA
AAGACCTTGTGGGCACGAGGTGGGTGCGTGGGCGGCAGAAGGGAAACGGG
GGGCACGTCTCATTTTTTTTTTTTTTTTTAACCCCCGGAAGGCTGAGGTA
AAAACCTTTACCAATGCTTCCATACTTGAGTATTTTACCAAAGTATGTCT
ACATTTCCTTTAACAGAACAGAGTTATTTATTCCTCTCCGGGGTAGGTGG
GGGCACGTCTCATGTCCTTGCTTTGTTTTTGTGAGGACGTTTTTTCAAGC
AGCGCCTTGGGTGTCCATACAAGCACGCTGATCTGTTACGTGTTTGAAGA
TGGTTTAAACTGTTGATTGTCAAGGGCAACACAAACAGCAACCCTGTTCA
TATTCCCTAACTATTTTGTTCTTTTTTTAGTCATTCCGTCATGTTCCTAG
TATTGTCATTTTCCACCATCCTGTATACTAATATAAACGCTTATGTTACG
TAGTCTAGTGAAGGTTGACAATTTGCTGCGTAGCAAAACATGAAAAAGAG
CAAAATAAAAAACATCACTTGAGGCAACATTTATATTTTATTTTTATTGT
TACTGTTATTGTTATTGTTATTGTTATTGTTATTATTTTATTTTTTATTT
TTTTACATGTCATGTTTTTTTTTTTCATCATGATATTTACGTGTATGTAT
TTATATCAATAAATTAATAAACGTGTGATCACCCATCGTTTTTTTTTTTT
TTTTTCAGTAATGAATCATTTAAAATCAAGAGAATTGTTGAACAACTTTT
CTTTCTAAATCGTGGAGCAAGTACACACGAACCGAACAGGGTTTTCCAAT
AAAAGGCGAAGGGGAGGAGGATATCTTCACTCTTGAAATGAACCCTGCCA
CAGTCTGGTGAAGTATTAGCCTGAACCTCATATCATAACTTCATTGTACC
GATGCAGAGATTTTGCAGTTGTTTTACGCTCATTATCAAAATTAAATTTA
CAGCTGACTTCAAGCATGAGTTATTTTCATTTATTTAGCAAAATTAGATC
GTGACCGACACGGAGTAATCAACTCGGACTTGAAAGTTAAGTGTGCCGAT
CAGTGATATAACTTGTAGCCAAACATGTTGGGGAGGTACAGTGCTGCAAA
ATGATGGTATCGTACTCCCCCCCCCCCATGTCTACGGAAAGAGAGCGCAG
GAGGTGTTGTCGTCGCCTGTGTCGCCCTACCGTCGAGAACGTTTTCGGAA
GTATCATATCGTTGGTGATGTTGATTCTCTATTACTCCTAGTAGAGCCGT
GGCTAGGTAAATCCGTGCAGTTCTTGCCTGTACCGTGGACTCGCTGCGGA
CGCAGCAGTTCCCTACGCTCCCATGAAGATTCAACTTGAGGACTTGCTCA
AGAACAGACTGGAAAAGCTACTCCGAATCTACAATCACGATGATGATGAC
GACAAGAAGGATAAATGCCTTACCGTATCAAGTCACAAGGATCGATGACC
TTAATGTTGTTGTTGTTGTTGTTGTTCAGTATACTAGTTGACGTGTATCC
CATAAGTATACCACCATATGGACACATGTAGAGTGTATAGAGGCATTTCA
TCACCTCCGTTTATTAAAAAGAACCCTGCATGCTTTTTTTTTCGTTGAAC
CTCCAATTTTTGCGACGAACATGCAACTTTTAGCACATACACATGCACAT
GCATACACGTACACGCATGCACGCACGCACAGGTACCAACATCCCCTGTG
CGAGCGCATATCCGAAGTGGTCGTCGGTGGCGATTACATCACCACGGAGG
CCGGGACGGGCCTGGTGCACACGGCTCCCGGGCACGGGCAGGAGGACTAC
GTGACGGGTCTCAAGTATGGTCTACCGCTGCTCAGCCCCGTGGACGATGC
GGGGAAGTTCACGGCGGAAGCGGGGGAGAGGTTCGCCGGGCTGTCCGTGT
TGAAGGTGTGGTTTTTTGTGGAAAATTAATTATTGTTGGAACAGAATTAA
CGCAGTTACTTGAATGCAAATCTGATTTAAAAAAAATAATAATCAGAAAT
TGTCGATTTCCGCATGATTTTTTTTTTGCGCCGTCAGTTCCCAAGTTGTC
CGGGCGAGTATGTCGAAATTGAAATATAGGTGTCACGCCCTGTGCGGTGC
GAACGGAGACCCTGCCCTGTACGTGTGTACGTTTTTTAACTGTCTATGAT
GGTGCTGTTTGGAAATTTCCTCGGGCACCTGCGTGACTCTCAGAACTGTA
TTTGCTTCTCCAGTCACGTGGTGAGGCGACCCACGGATGTGTGTACACGA
CCAAGGCCGAGAAATTTGAGGGCTTTTGTAACGTTGTGGCGGGCATGCAG
CTTTCAAGTCAAGCACGAGCTACGACGCACCGTTCATACTATTAATAGAG
TACGAAGTGAATGTCGAACCGTGTAATTGTGGGTGAGTCGTACGGAATTA
TTGGTCAGTGAGGTGGGAAGACTTTGGTCTTTTTGGTCGAAGTTTTGGTT
AAAAGTGTTTTTGAGAGTAAAGCTAATAAAAAGTACACTGTCCTATGTAC
CTGCCTTTACCTTATGTTCTTCGGGGTTTGCTGACGTGTAATAATAGTAT
TAGTAGTGCGTAGTTTTCAGACTACATCAATTCAGTATGATTTGGCAAGA
TTGTGCTGAAAAATATTATTGAGGTTGTGACCAAAAACTCATGGGGCATG
CGTGGATTTTTTATGCGAGTGTTGATGCGTAGACGATGTTATCACCTCCT
TGGCATGTTACACCCACGAGTGACTTTGTTATACTCCCGGGTGGATGCAG
TTCTGTAGTCACCAGTTCTAGTCACCAGTTCTCTAGTCACCAGTTCTCTA
GTCACCAGTTCTCTAGTCACCAGTTCTCTAGTCACCAGTTCTCTAGTCAC
CAGTTCTCTAGTCACCAGTTCTCTAGTCACCAGTTCTCTAGTCACCAGTT
CTCTAGTCACCAGTTCTCTAGTCACCAGTTCTCTAGTCACCAGTTCTCTA
GTCACCAGTTCTCTAGTCACCAGTTCTCTAGTCACCAGTTCTCTAGTCAC
CAGTTCTCTAGTCACCAGTTCTATAGTCACCAGTCCGCTGCGTGTCAGTC
TAGCGGCTGTTCGCCAACAGGGTGAACCATACCCCCCCCCCCCCCGGCCC
CTCGAAATACCCCCATACCCCCAAAGGAGTACCCTCCCCCCCAATTTTGT
TTAGTTGATGAAAAGTCACGCGCGTCCAGATGCGTGTATATTATTTCGGA
AATAGGTATGCTGTATTTTGTCTCATGTGCGCCTCACGAGAAAAAAAATA
TATATCTGATTTCTTTGCATGGGTGAGGAAGGAAACGAGGAGGTTTTGAC
CGCACTTGGGGAGGCTGGAGGTCTCCTAGCCAAAGAGGCATACTCCCACA
AATACCCGTACGACTGGCGCACCAAGAAACCAACCATCTTCCGCGCTACC
GACCAGTGGTTCGCCTCCGTCGACCGCTTCCGAGACACTGCACTCGACGC
CATCAACAAGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig20043:313..3875-

>mRNA_H-paniculata_contig20043.5153.1 ID=mRNA_H-paniculata_contig20043.5153.1|Name=mRNA_H-paniculata_contig20043.5153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig20043:313..3875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGCTTGTCGTAGCGACGGACCTCGTAGAGACCGTAAGCGCAAAAGT
CGGACTGGAGGAAGGCGATACTCTAAAGGTGCTGGCTACCCTACCCGGAA
AAGACCTTGTGGGCACGAGAGGAAGCTTGTCGTAGCGACGGACCTCGTAG
AGACCGTAAGCGCAAAAGTCGGACTGGAGGAAGGCGATACTCTAAAGGTG
CTGGCTACCCTACCCGGAAAAGACCTTGTGGGCACGAGGTACCAACATCC
CCTGTGCGAGCGCATATCCGAAGTGGTCGTCGGTGGCGATTACATCACCA
CGGAGGCCGGGACGGGCCTGGTGCACACGGCTCCCGGGCACGGGCAGGAG
GACTACGTGACGGGTCTCAAGTATGGTCTACCGCTGCTCAGCCCCGTGGA
CGATGCGGGGAAGTTCACGGCGGAAGCGGGGGAGAGGTTCGCCGGGCTGT
CCGTGTTGAAGGTACCAACATCCCCTGTGCGAGCGCATATCCGAAGTGGT
CGTCGGTGGCGATTACATCACCACGGAGGCCGGGACGGGCCTGGTGCACA
CGGCTCCCGGGCACGGGCAGGAGGACTACGTGACGGGTCTCAAGTATGGT
CTACCGCTGCTCAGCCCCGTGGACGATGCGGGGAAGTTCACGGCGGAAGC
GGGGGAGAGGTTCGCCGGGCTGTCCGTGTTGAAGGAAGGAAACGAGGAGG
TTTTGACCGCACTTGGGGAGGCTGGAGGTCTCCTAGCCAAAGAGGCATAC
TCCCACAAATACCCGTACGACTGGCGCACCAAGAAACCAACCATCTTCCG
CGCTACCGACCAGTGGTTCGCCTCCGTCGACCGCTTCCGAGACACTGCAC
TCGACGCCATCAACAAGGTCGAAGGAAACGAGGAGGTTTTGACCGCACTT
GGGGAGGCTGGAGGTCTCCTAGCCAAAGAGGCATACTCCCACAAATACCC
GTACGACTGGCGCACCAAGAAACCAACCATCTTCCGCGCTACCGACCAGT
GGTTCGCCTCCGTCGACCGCTTCCGAGACACTGCACTCGACGCCATCAAC
AAGGTC
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