mRNA_H-paniculata_contig20013.5138.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 156 bits (395), Expect = 7.150e-39 Identity = 97/267 (36.33%), Postives = 132/267 (49.44%), Query Frame = 1
Query: 22 FASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKD-SQGRPLITKLRKLIYGIRH-----------------W---------------DAYIMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKELKANHAGS------------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKGAP 687
+A V R+ S R+L AIA H W V +D FL+ D +VY+R AP E +D + G ++ KL K +YG+ W D +LAIY+DD+LITG N V + LM F MT G+V +++GI++ D HGT++ISQ Y +L++YGM+ N V TPG G EL AI GSL++L R D+S+ V Q R ANP VHM + K LLR L+G P
Sbjct: 301 YAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTP 567
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 156 bits (394), Expect = 1.970e-38 Identity = 97/267 (36.33%), Postives = 131/267 (49.06%), Query Frame = 1
Query: 22 FASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKD-SQGRPLITKLRKLIYGIRH-----------------W---------------DAYIMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKELKANHAGS------------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKGAP 687
+A V R+ S R+L AIA H W V +D FL+ D +VY+R AP E +D + G ++ KL K +YG+ W D +LAIY+DD+LITG N V LM F MT G+V +++GI++ D HGT++ISQ Y +L++YGM+ N V TPG G EL AI GSL++L R D+S+ V Q R ANP VHM + K LLR L+G P
Sbjct: 1080 YAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTP 1346
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A6H5L4B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4B4_9PHAE) HSP 1 Score: 150 bits (378), Expect = 2.460e-36 Identity = 95/266 (35.71%), Postives = 130/266 (48.87%), Query Frame = 1
Query: 25 ASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKD-SQGRPLITKLRKLIYGIRH-----------------W---------------DAYIMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKELKANHAGS------------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKGAP 687
A V R+ S R+L AIA H V +D FL+ D +VY+R AP + +D + G ++ KL K +YG+ W D +LAIY+DD+LITG N V + LM F MT G+V +++GI++ D HGT++ISQ Y +L++YGM+ N V TPG G EL AI GSL++L R D+S+ V Q R ANP VHM + K LLR L+G P
Sbjct: 994 APVTRLGSIRMLFAIACEHGREVYQLDVVAAFLNTYTDSDVYVRPAPGDDERDPTTGEVIVNKLEKCLYGLSQAPSLWNDAINDRLTIFGWQRTHCDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTEMGEVMRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTP 1259
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE) HSP 1 Score: 139 bits (349), Expect = 2.010e-34 Identity = 90/256 (35.16%), Postives = 120/256 (46.88%), Query Frame = 1
Query: 55 LLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKD-SQGRPLITKLRKLIYGIRH-----------------W---------------DAYIMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKELKANHAGS------------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKGAP 687
+L AIA H W V +D FL+ D +VY+R AP E +D + G ++ KL K +YG+ W D +LAIY+DD+LITG N V LM F MT G+V +++GI + D GT++ISQ Y + ++YGM+ N V TPG G EL AI GSL++L R D S+ V Q R ANP VHM + K LLR L+G P
Sbjct: 1 MLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRAHSDPCVYIFVRRDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTP 256
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: UPI001D05617A (reverse transcriptase (RNA-dependent DNA polymerase) domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D05617A) HSP 1 Score: 140 bits (354), Expect = 3.380e-33 Identity = 94/265 (35.47%), Postives = 128/265 (48.30%), Query Frame = 1
Query: 1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGIRH----WDAYI------------------------MLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGT----------GKELKANHAGSAIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
GI TFASV R ES R + AIAA + + MD T FL G +DEEVY+ Q E D GR + +L+K IYG++ W I ++AIY+DDLL+TG V ++ L +F MT G + LGI +T D+ I +SQ Y+ +L+ Y M DCN +TPG + K A + VGSL++ R D+ F V R +ANPT H +VKR++R LKG
Sbjct: 673 GIDYSETFASVVRPESYRTIFAIAAAEDLEIEQMDVKTAFLYGDIDEEVYLEQPEGFE--DGTGR--VCRLKKAIYGLKQAPRIWFQTIAKFLETLGYRPIAADVSVFVRGKSIIAIYVDDLLLTGACPREVQRIKDALSKRFQMTDLGPCSHYLGIKVTRDRARRRIELSQRAYIEKILRTYNMSDCNPANTPGRRSAPASRRRLARPPKYQAAYAKRVGSLMYAMLGTRSDICFSVGACCRHLANPTPQHQTAVKRIMRYLKG 933
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A0F8A052_9HYPO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hirsutella minnesotensis 3608 TaxID=1043627 RepID=A0A0F8A052_9HYPO) HSP 1 Score: 135 bits (341), Expect = 1.990e-32 Identity = 92/266 (34.59%), Postives = 126/266 (47.37%), Query Frame = 1
Query: 1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGIRH----WDAYI------------------------MLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKEL-----------KANHAGSAIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
GI TFASV + ES R + AIAA + + MD T FL G +DEEVY+ Q KD R + +L+K IYG++ W I ++AIY+DDLL+TG V ++ L +F MT G + LGI +T D+ I +SQ Y+ +L+ Y M DCN TP L K A + VGSL++ R D+ F V R++ANPT H +VKR++R LKG
Sbjct: 83 GIDYSETFASVVKPESYRTIFAIAAAEDLEIEQMDVKTAFLYGDIDEEVYLEQPQGF--KDGTSR--VCRLKKAIYGLKQAPRIWFQTISKFLETLGYRPIAADVSVFVRGKSIIAIYVDDLLLTGACPREVQRIKDALSRRFQMTDLGPCSHYLGIKVTRDRARRRIELSQRAYIEKVLRTYNMSDCNPADTPMAADPLQPPAEDWHAHPKDQTAYAKRVGSLMYAMLGTRSDICFSVGACCRYLANPTPQHQTAVKRIMRYLKG 344
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A0F7ZQQ7_9HYPO (Integrase catalytic domain-containing protein n=2 Tax=Hirsutella minnesotensis 3608 TaxID=1043627 RepID=A0A0F7ZQQ7_9HYPO) HSP 1 Score: 138 bits (347), Expect = 3.120e-32 Identity = 95/266 (35.71%), Postives = 126/266 (47.37%), Query Frame = 1
Query: 1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGI----RHWDAYI------------------------MLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKEL-----------KANHAGSAIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
GI TFASV R ES R + AIAA + + MD T FL G +DEEVY+ Q E D GR + +L+K IYG+ R W I ++AIY+DDLL+TG V ++ L +F MT G + LGI +T D+ I +SQ Y+ +L+ Y M DCN TP L K A + VGSL++ R D+ F V R +ANPT H +VKR++R LKG
Sbjct: 1034 GIDYSETFASVVRPESYRTIFAIAAAEDLEIEQMDVKTAFLYGDIDEEVYLEQPEGFE--DGTGR--VCRLKKAIYGLQQAPRIWFQTIAKFLETLGYRPIAADVSVFVRGKSIIAIYVDDLLLTGACPREVQRIKDALSKRFQMTDLGPCSHYLGIKVTRDRARRRIELSQRAYIKKILRTYNMSDCNPADTPMAADPLQPPAEGWHAPPKDQAAYAKRVGSLMYAMLGTRSDICFSVGACCRHLANPTPQHQTAVKRIMRYLKG 1295
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A452XBZ2_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XBZ2_AEGTS) HSP 1 Score: 134 bits (336), Expect = 5.780e-32 Identity = 86/248 (34.68%), Postives = 141/248 (56.85%), Query Frame = 1
Query: 1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGIRH----WD-------AYIMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTP----------GTGKELKANHAGSAIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
GI + FA V R+E+ RLL+A+AA W + +D + FL+G+L+EEVY+ Q P E K+S+ + + KLRK +YG+R W+ A +++ +Y+DDL++TG N V K ++ F+M+ G ++ LGI++ + I +SQ Y +L+K GM N P G GK++ A + S +VGSL +L + R D+++ V +R+M PTS H+ +VK++LR ++G
Sbjct: 91 GIDFDEVFAPVARLETVRLLIAVAAQEGWEIHHLDVKSAFLNGELEEEVYVVQTPGFEQKESEEK--VFKLRKALYGLRQAPRAWNIKLDRSLARLLVGVYVDDLVVTGSNIDEVKKFKKQMLDLFSMSDLGLLSYYLGIEVKQSEEG--IKLSQTSYASKILEKTGMLQSNTCQVPMEQRLKLRKSGEGKKVDATYYRS-VVGSLRYLV-NTRPDLAYSVGIVSRYMECPTSQHLAAVKQILRYIRG 332
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: B8LKV8_PICSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LKV8_PICSI) HSP 1 Score: 130 bits (328), Expect = 2.520e-31 Identity = 93/270 (34.44%), Postives = 143/270 (52.96%), Query Frame = 1
Query: 1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGI----RHW----DAY-------------------------IMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITH-DKGHGTISISQHHYVVSLLKKYGMDDCNHVHTP-GTGKELKANHAGS--------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
G+ TFA V R+++ R++LAIAA HNW V MD + FL+G L+EEVY++Q PR E++ + + + +L+K + G+ R W D+Y +++ +Y+DDL+ TG N+T+D S + +F MT G + LGI++T DKG I I Q Y +LK++ M +C+ V TP G G +L +VGSL++LT +R D+ + VS +RFM P + H + KRLLR + G
Sbjct: 59 GVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDK--VYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKVNEQGQILIVCLYVDDLIYTG--NLTIDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKG---IFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSREQNEMDFDSTIFRKLVGSLMYLTATRP-DIMYGVSLISRFMDTPKNSHWQAGKRLLRYIAG 320
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A5E4FCT0_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FCT0_PRUDU) HSP 1 Score: 133 bits (335), Expect = 3.180e-31 Identity = 88/269 (32.71%), Postives = 140/269 (52.04%), Query Frame = 1
Query: 1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGI----RHW----DAYI-------------------------MLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKELKANHAGS---------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
GI TFA V R+++ R L+A+AA W + +D + FL+G L+EEVY+ Q IK ++ + + +LRK +YG+ R W D Y+ +++IY+DD++ TG ++ V + + +MCK+ M+ G + LG+ +T +G +I I Q Y ++LL K+G+ DC V TP + GS IVGSL++LT +R D+ F ARFM NP+ +H G+ KR+LR ++G
Sbjct: 104 GIDFNETFAPVARLDTIRTLIALAAQKGWKLWQLDVKSAFLNGVLEEEVYVDQPEGFVIKGAEDK--VYRLRKALYGLKQAPRAWYSEIDTYLYQCGFHRSPSEATLYVRTKEGVGTLIISIYVDDIVYTGSSDELVKEFKAEMMCKYEMSDLGLLHHFLGMGVTQTEG--SIFIHQKKYALTLLDKFGLKDCKSVSTPLVATDKLKREDGSDPADESLFRKIVGSLLYLTATRP-DIMFSACLLARFMHNPSKMHYGAAKRVLRYIQG 367 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20013.5138.1 >prot_H-paniculata_contig20013.5138.1 ID=prot_H-paniculata_contig20013.5138.1|Name=mRNA_H-paniculata_contig20013.5138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp MDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGIRHWDAback to top mRNA from alignment at H-paniculata_contig20013:343..1523- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20013.5138.1 ID=mRNA_H-paniculata_contig20013.5138.1|Name=mRNA_H-paniculata_contig20013.5138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1181bp|location=Sequence derived from alignment at H-paniculata_contig20013:343..1523- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20013:343..1523- >mRNA_H-paniculata_contig20013.5138.1 ID=mRNA_H-paniculata_contig20013.5138.1|Name=mRNA_H-paniculata_contig20013.5138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig20013:343..1523- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |