mRNA_H-paniculata_contig20013.5138.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20013.5138.1
Unique NamemRNA_H-paniculata_contig20013.5138.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 7.150e-39
Identity = 97/267 (36.33%), Postives = 132/267 (49.44%), Query Frame = 1
Query:   22 FASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKD-SQGRPLITKLRKLIYGIRH-----------------W---------------DAYIMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKELKANHAGS------------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKGAP 687
            +A V R+ S R+L AIA  H W V  +D    FL+   D +VY+R AP  E +D + G  ++ KL K +YG+                   W               D   +LAIY+DD+LITG N   V +    LM  F MT  G+V +++GI++  D  HGT++ISQ  Y   +L++YGM+  N V TPG G EL                   AI GSL++L    R D+S+ V Q  R  ANP  VHM + K LLR L+G P
Sbjct:  301 YAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTP 567          
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.970e-38
Identity = 97/267 (36.33%), Postives = 131/267 (49.06%), Query Frame = 1
Query:   22 FASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKD-SQGRPLITKLRKLIYGIRH-----------------W---------------DAYIMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKELKANHAGS------------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKGAP 687
            +A V R+ S R+L AIA  H W V  +D    FL+   D +VY+R AP  E +D + G  ++ KL K +YG+                   W               D   +LAIY+DD+LITG N   V      LM  F MT  G+V +++GI++  D  HGT++ISQ  Y   +L++YGM+  N V TPG G EL                   AI GSL++L    R D+S+ V Q  R  ANP  VHM + K LLR L+G P
Sbjct: 1080 YAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTP 1346          
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A6H5L4B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4B4_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.460e-36
Identity = 95/266 (35.71%), Postives = 130/266 (48.87%), Query Frame = 1
Query:   25 ASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKD-SQGRPLITKLRKLIYGIRH-----------------W---------------DAYIMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKELKANHAGS------------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKGAP 687
            A V R+ S R+L AIA  H   V  +D    FL+   D +VY+R AP  + +D + G  ++ KL K +YG+                   W               D   +LAIY+DD+LITG N   V +    LM  F MT  G+V +++GI++  D  HGT++ISQ  Y   +L++YGM+  N V TPG G EL                   AI GSL++L    R D+S+ V Q  R  ANP  VHM + K LLR L+G P
Sbjct:  994 APVTRLGSIRMLFAIACEHGREVYQLDVVAAFLNTYTDSDVYVRPAPGDDERDPTTGEVIVNKLEKCLYGLSQAPSLWNDAINDRLTIFGWQRTHCDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTEMGEVMRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTP 1259          
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.010e-34
Identity = 90/256 (35.16%), Postives = 120/256 (46.88%), Query Frame = 1
Query:   55 LLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKD-SQGRPLITKLRKLIYGIRH-----------------W---------------DAYIMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKELKANHAGS------------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKGAP 687
            +L AIA  H W V  +D    FL+   D +VY+R AP  E +D + G  ++ KL K +YG+                   W               D   +LAIY+DD+LITG N   V      LM  F MT  G+V +++GI +  D   GT++ISQ  Y   + ++YGM+  N V TPG G EL                   AI GSL++L    R D S+ V Q  R  ANP  VHM + K LLR L+G P
Sbjct:    1 MLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRAHSDPCVYIFVRRDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTP 256          
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: UPI001D05617A (reverse transcriptase (RNA-dependent DNA polymerase) domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D05617A)

HSP 1 Score: 140 bits (354), Expect = 3.380e-33
Identity = 94/265 (35.47%), Postives = 128/265 (48.30%), Query Frame = 1
Query:    1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGIRH----WDAYI------------------------MLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGT----------GKELKANHAGSAIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
            GI    TFASV R ES R + AIAA  +  +  MD  T FL G +DEEVY+ Q    E  D  GR  + +L+K IYG++     W   I                        ++AIY+DDLL+TG     V ++   L  +F MT  G  +  LGI +T D+    I +SQ  Y+  +L+ Y M DCN  +TPG            +  K   A +  VGSL++     R D+ F V    R +ANPT  H  +VKR++R LKG
Sbjct:  673 GIDYSETFASVVRPESYRTIFAIAAAEDLEIEQMDVKTAFLYGDIDEEVYLEQPEGFE--DGTGR--VCRLKKAIYGLKQAPRIWFQTIAKFLETLGYRPIAADVSVFVRGKSIIAIYVDDLLLTGACPREVQRIKDALSKRFQMTDLGPCSHYLGIKVTRDRARRRIELSQRAYIEKILRTYNMSDCNPANTPGRRSAPASRRRLARPPKYQAAYAKRVGSLMYAMLGTRSDICFSVGACCRHLANPTPQHQTAVKRIMRYLKG 933          
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A0F8A052_9HYPO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hirsutella minnesotensis 3608 TaxID=1043627 RepID=A0A0F8A052_9HYPO)

HSP 1 Score: 135 bits (341), Expect = 1.990e-32
Identity = 92/266 (34.59%), Postives = 126/266 (47.37%), Query Frame = 1
Query:    1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGIRH----WDAYI------------------------MLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKEL-----------KANHAGSAIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
            GI    TFASV + ES R + AIAA  +  +  MD  T FL G +DEEVY+ Q      KD   R  + +L+K IYG++     W   I                        ++AIY+DDLL+TG     V ++   L  +F MT  G  +  LGI +T D+    I +SQ  Y+  +L+ Y M DCN   TP     L           K   A +  VGSL++     R D+ F V    R++ANPT  H  +VKR++R LKG
Sbjct:   83 GIDYSETFASVVKPESYRTIFAIAAAEDLEIEQMDVKTAFLYGDIDEEVYLEQPQGF--KDGTSR--VCRLKKAIYGLKQAPRIWFQTISKFLETLGYRPIAADVSVFVRGKSIIAIYVDDLLLTGACPREVQRIKDALSRRFQMTDLGPCSHYLGIKVTRDRARRRIELSQRAYIEKVLRTYNMSDCNPADTPMAADPLQPPAEDWHAHPKDQTAYAKRVGSLMYAMLGTRSDICFSVGACCRYLANPTPQHQTAVKRIMRYLKG 344          
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A0F7ZQQ7_9HYPO (Integrase catalytic domain-containing protein n=2 Tax=Hirsutella minnesotensis 3608 TaxID=1043627 RepID=A0A0F7ZQQ7_9HYPO)

HSP 1 Score: 138 bits (347), Expect = 3.120e-32
Identity = 95/266 (35.71%), Postives = 126/266 (47.37%), Query Frame = 1
Query:    1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGI----RHWDAYI------------------------MLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKEL-----------KANHAGSAIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
            GI    TFASV R ES R + AIAA  +  +  MD  T FL G +DEEVY+ Q    E  D  GR  + +L+K IYG+    R W   I                        ++AIY+DDLL+TG     V ++   L  +F MT  G  +  LGI +T D+    I +SQ  Y+  +L+ Y M DCN   TP     L           K   A +  VGSL++     R D+ F V    R +ANPT  H  +VKR++R LKG
Sbjct: 1034 GIDYSETFASVVRPESYRTIFAIAAAEDLEIEQMDVKTAFLYGDIDEEVYLEQPEGFE--DGTGR--VCRLKKAIYGLQQAPRIWFQTIAKFLETLGYRPIAADVSVFVRGKSIIAIYVDDLLLTGACPREVQRIKDALSKRFQMTDLGPCSHYLGIKVTRDRARRRIELSQRAYIKKILRTYNMSDCNPADTPMAADPLQPPAEGWHAPPKDQAAYAKRVGSLMYAMLGTRSDICFSVGACCRHLANPTPQHQTAVKRIMRYLKG 1295          
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A452XBZ2_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452XBZ2_AEGTS)

HSP 1 Score: 134 bits (336), Expect = 5.780e-32
Identity = 86/248 (34.68%), Postives = 141/248 (56.85%), Query Frame = 1
Query:    1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGIRH----WD-------AYIMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTP----------GTGKELKANHAGSAIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
            GI  +  FA V R+E+ RLL+A+AA   W +  +D  + FL+G+L+EEVY+ Q P  E K+S+ +  + KLRK +YG+R     W+       A +++ +Y+DDL++TG N   V K    ++  F+M+  G ++  LGI++   +    I +SQ  Y   +L+K GM   N    P          G GK++ A +  S +VGSL +L  + R D+++ V   +R+M  PTS H+ +VK++LR ++G
Sbjct:   91 GIDFDEVFAPVARLETVRLLIAVAAQEGWEIHHLDVKSAFLNGELEEEVYVVQTPGFEQKESEEK--VFKLRKALYGLRQAPRAWNIKLDRSLARLLVGVYVDDLVVTGSNIDEVKKFKKQMLDLFSMSDLGLLSYYLGIEVKQSEEG--IKLSQTSYASKILEKTGMLQSNTCQVPMEQRLKLRKSGEGKKVDATYYRS-VVGSLRYLV-NTRPDLAYSVGIVSRYMECPTSQHLAAVKQILRYIRG 332          
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: B8LKV8_PICSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LKV8_PICSI)

HSP 1 Score: 130 bits (328), Expect = 2.520e-31
Identity = 93/270 (34.44%), Postives = 143/270 (52.96%), Query Frame = 1
Query:    1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGI----RHW----DAY-------------------------IMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITH-DKGHGTISISQHHYVVSLLKKYGMDDCNHVHTP-GTGKELKANHAGS--------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
            G+    TFA V R+++ R++LAIAA HNW V  MD  + FL+G L+EEVY++Q PR E++  + +  + +L+K + G+    R W    D+Y                         +++ +Y+DDL+ TG  N+T+D   S +  +F MT  G +   LGI++T  DKG   I I Q  Y   +LK++ M +C+ V TP G G +L                +VGSL++LT +R  D+ + VS  +RFM  P + H  + KRLLR + G
Sbjct:   59 GVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDK--VYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKVNEQGQILIVCLYVDDLIYTG--NLTIDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKG---IFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSREQNEMDFDSTIFRKLVGSLMYLTATRP-DIMYGVSLISRFMDTPKNSHWQAGKRLLRYIAG 320          
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Match: A0A5E4FCT0_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FCT0_PRUDU)

HSP 1 Score: 133 bits (335), Expect = 3.180e-31
Identity = 88/269 (32.71%), Postives = 140/269 (52.04%), Query Frame = 1
Query:    1 GIYGESTFASVCRIESQRLLLAIAAVHNWSVITMDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGI----RHW----DAYI-------------------------MLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITHDKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKELKANHAGS---------AIVGSLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*LKG 681
            GI    TFA V R+++ R L+A+AA   W +  +D  + FL+G L+EEVY+ Q     IK ++ +  + +LRK +YG+    R W    D Y+                         +++IY+DD++ TG ++  V +  + +MCK+ M+  G +   LG+ +T  +G  +I I Q  Y ++LL K+G+ DC  V TP    +      GS          IVGSL++LT +R  D+ F     ARFM NP+ +H G+ KR+LR ++G
Sbjct:  104 GIDFNETFAPVARLDTIRTLIALAAQKGWKLWQLDVKSAFLNGVLEEEVYVDQPEGFVIKGAEDK--VYRLRKALYGLKQAPRAWYSEIDTYLYQCGFHRSPSEATLYVRTKEGVGTLIISIYVDDIVYTGSSDELVKEFKAEMMCKYEMSDLGLLHHFLGMGVTQTEG--SIFIHQKKYALTLLDKFGLKDCKSVSTPLVATDKLKREDGSDPADESLFRKIVGSLLYLTATRP-DIMFSACLLARFMHNPSKMHYGAAKRVLRYIQG 367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20013.5138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF46_9PHAE7.150e-3936.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE1.970e-3836.33Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5L4B4_9PHAE2.460e-3635.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW03_9PHAE2.010e-3435.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001D05617A3.380e-3335.47reverse transcriptase (RNA-dependent DNA polymeras... [more]
A0A0F8A052_9HYPO1.990e-3234.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0F7ZQQ7_9HYPO3.120e-3235.71Integrase catalytic domain-containing protein n=2 ... [more]
A0A452XBZ2_AEGTS5.780e-3234.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
B8LKV8_PICSI2.520e-3134.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E4FCT0_PRUDU3.180e-3132.71PREDICTED: Retrovirus-related Pol poly from (Fragm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20013contigH-paniculata_contig20013:343..1523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score113.2
Seed ortholog evalue1.3e-22
Seed eggNOG ortholog35725.K2R9C2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons3
Model size1049
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20013.5138.1prot_H-paniculata_contig20013.5138.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20013 720..1424 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929511.0778244-UTR-H-paniculata_contig20013:342..7191622929511.0778244-UTR-H-paniculata_contig20013:342..719Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20013 343..719 -
1691480892.5859466-UTR-H-paniculata_contig20013:342..7191691480892.5859466-UTR-H-paniculata_contig20013:342..719Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20013 343..719 -
1622929511.132678-UTR-H-paniculata_contig20013:1424..15231622929511.132678-UTR-H-paniculata_contig20013:1424..1523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20013 1425..1523 -
1691480892.62602-UTR-H-paniculata_contig20013:1424..15231691480892.62602-UTR-H-paniculata_contig20013:1424..1523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20013 1425..1523 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929511.093941-CDS-H-paniculata_contig20013:719..8541622929511.093941-CDS-H-paniculata_contig20013:719..854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20013 720..854 -
1691480892.598862-CDS-H-paniculata_contig20013:719..8541691480892.598862-CDS-H-paniculata_contig20013:719..854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20013 720..854 -
1622929511.1090307-CDS-H-paniculata_contig20013:890..11881622929511.1090307-CDS-H-paniculata_contig20013:890..1188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20013 891..1188 -
1691480892.6075172-CDS-H-paniculata_contig20013:890..11881691480892.6075172-CDS-H-paniculata_contig20013:890..1188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20013 891..1188 -
1622929511.1211057-CDS-H-paniculata_contig20013:1284..14241622929511.1211057-CDS-H-paniculata_contig20013:1284..1424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20013 1285..1424 -
1691480892.6166918-CDS-H-paniculata_contig20013:1284..14241691480892.6166918-CDS-H-paniculata_contig20013:1284..1424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20013 1285..1424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20013.5138.1

>prot_H-paniculata_contig20013.5138.1 ID=prot_H-paniculata_contig20013.5138.1|Name=mRNA_H-paniculata_contig20013.5138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MDFSTDFLSGKLDEEVYMRQAPRIEIKDSQGRPLITKLRKLIYGIRHWDA
YIMLAIYLDDLLITGPNNMTVDKVPSTLMCKFTMTAFGDVTQILGIDITH
DKGHGTISISQHHYVVSLLKKYGMDDCNHVHTPGTGKELKANHAGSAIVG
SLIFLTPSRRVDVSFPVSQAARFMANPTSVHMGSVKRLLR*
back to top

mRNA from alignment at H-paniculata_contig20013:343..1523-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20013.5138.1 ID=mRNA_H-paniculata_contig20013.5138.1|Name=mRNA_H-paniculata_contig20013.5138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1181bp|location=Sequence derived from alignment at H-paniculata_contig20013:343..1523- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAATATACGGTGAAAGCACCTTCGCATCGGTCTGCAGAATCGAAAGCCA GCGACTTCTACTTGCCATCGCAGCTGTTCATAATTGGAGCGTTATCACCA TGGACTTTTCAACTGATTTCCTGAGCGGAAAACTTGACGAAGAAGTCTAC ATGCGACAAGCACCGAGAATCGAGATCAAGGACTCACAGGGGCGACCGCT CATCACGAAGCTACGCAAATTAATCTATGGTATTCGCCAGTCTCCGAAGG TGTGGCATAGAACCATCGATACAGATACTCGGAACATCGGTTTCATTGCT AAAGCGAGCGATTCGTGCGTGTACATCAAAGGTAGCTGGGACGCCTACAT CATGCTTGCGATATACCTCGACGATCTGCTCATCACTGGGCCCAACAATA TGACCGTAGACAAAGTCCCTTCTACACTCATGTGTAAATTCACCATGACT GCCTTTGGAGACGTGACGCAAATTCTAGGAATAGACATCACTCATGACAA AGGGCACGGCACCATCAGCATAAGTCAGCACCACTACGTGGTATCGCTGC TGAAGAAATACGGCATGGACGACTGCAACCACGTTCACACACCAGGCACA GGCAAGGAGCTGAAGGCAAACCATGCAGGAAGTGTCTTACTAGACGAATA AGGTACAAGAGATAATCAGGCCATTGTCGGGAGTCTCATCTTCTTGACTC CGTCTAGGCGTGTGGACGTATCGTTCCCTGTCTCACAAGCGGCGCGTTTC ATGGCCAATCCTACCTCCGTTCACATGGGAAGCGTGAAGCGCCTCTTGCG CTAACTAAAAGGCGCGCCAACCTAAAACTCCCCTACAGTCGTGACTCCAA CTTCGAGCTAACCGGCTTCTGCGACGCCCCCTACAGTGCTGGCGACCCCG AGAAAGCTAGGTCAACCTCATGGAGCATGTACTTCCTCTCCGGTGGAATT GTTCATTTCAGTTCGAGCCTTCAGAAAATTACGGTTCAGTCAACCACGGA GGCGGAACTAATCGCCATGAGCACCTGCGCTAAACAAGGAATTTACCTGT TCGGCATCCTCGGAGAGTTTGGATGGGAGAACTTCCGTAGCGTCCGCATC TTCTGCAATAAGGAGGGAGCGCTACTTCTTGCGGGCCAAGGCAACTATGG GAGTAGGTCCAAACACCTGGCCATTCGTTTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20013:343..1523-

>mRNA_H-paniculata_contig20013.5138.1 ID=mRNA_H-paniculata_contig20013.5138.1|Name=mRNA_H-paniculata_contig20013.5138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig20013:343..1523- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTTTTCAACTGATTTCCTGAGCGGAAAACTTGACGAAGAAGTCTA
CATGCGACAAGCACCGAGAATCGAGATCAAGGACTCACAGGGGCGACCGC
TCATCACGAAGCTACGCAAATTAATCTATGGTATTCGCCAATGGACTTTT
CAACTGATTTCCTGAGCGGAAAACTTGACGAAGAAGTCTACATGCGACAA
GCACCGAGAATCGAGATCAAGGACTCACAGGGGCGACCGCTCATCACGAA
GCTACGCAAATTAATCTATGGTATTCGCCACTGGGACGCCTACATCATGC
TTGCGATATACCTCGACGATCTGCTCATCACTGGGCCCAACAATATGACC
GTAGACAAAGTCCCTTCTACACTCATGTGTAAATTCACCATGACTGCCTT
TGGAGACGTGACGCAAATTCTAGGAATAGACATCACTCATGACAAAGGGC
ACGGCACCATCAGCATAAGTCAGCACCACTACGTGGTATCGCTGCTGAAG
AAATACGGCATGGACGACTGCAACCACGTTCACACACCAGGCACAGGCAA
GGAGCTGAAGGCAAACCATGCAGGAAGTCTGGGACGCCTACATCATGCTT
GCGATATACCTCGACGATCTGCTCATCACTGGGCCCAACAATATGACCGT
AGACAAAGTCCCTTCTACACTCATGTGTAAATTCACCATGACTGCCTTTG
GAGACGTGACGCAAATTCTAGGAATAGACATCACTCATGACAAAGGGCAC
GGCACCATCAGCATAAGTCAGCACCACTACGTGGTATCGCTGCTGAAGAA
ATACGGCATGGACGACTGCAACCACGTTCACACACCAGGCACAGGCAAGG
AGCTGAAGGCAAACCATGCAGGAAGTGCCATTGTCGGGAGTCTCATCTTC
TTGACTCCGTCTAGGCGTGTGGACGTATCGTTCCCTGTCTCACAAGCGGC
GCGTTTCATGGCCAATCCTACCTCCGTTCACATGGGAAGCGTGAAGCGCC
TCTTGCGCTAAGCCATTGTCGGGAGTCTCATCTTCTTGACTCCGTCTAGG
CGTGTGGACGTATCGTTCCCTGTCTCACAAGCGGCGCGTTTCATGGCCAA
TCCTACCTCCGTTCACATGGGAAGCGTGAAGCGCCTCTTGCGCTAA
back to top