mRNA_H-paniculata_contig1991.5086.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1991.5086.1 vs. uniprot
Match: D8LQN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN1_ECTSI) HSP 1 Score: 675 bits (1741), Expect = 1.220e-215 Identity = 529/1320 (40.08%), Postives = 706/1320 (53.48%), Query Frame = 2
Query: 395 DSPESSEE-MEIPGFPKAPKSKHRVGFAANLHGHLEKLAANATSISHVLEALCGGLDRLEHKVDANASEMAARLANIVHHVTGEADEDTMSAWENI------NLGSP--VGDNSVARRRGSFTLGLQGASFSGDSRF-----------ELDEIGED------------------------NSGSETRELD---------SLTSQTEAVVPKVLEATKAADEPAEKSKGYEDLTRSKCNLIVIANSSATMAGVPGGKNKDVVPEEEQAVTKPNKGILASSD--------HRRSNQDDQSQGS--EYINFEENENENDVSPVDKVGPSKSAR-LSDDEAGFFNQPANAAKTGEGQIDLEESIGSAS-DWHYIAQQRWLWAFGRVCHLLRRRKRKQLEIMTQRATDRTVRMGSRVSIMEKRLDETRDAFIKMERLRAKNTTHSCEIKNLNAKVAELSALIGVEDRVKGFVQVTQAHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIRQHGSRLEDLDDQYARSEEAVRHAQDRLGDVQEEVNTATQSIVELERQLRVDEERLDSLELAKKVQQQRLSELGQKVGEGGVQPGVGADNDLSIEHEAPEEIATERMTRLLKAAAIGLELLTVDLDKIVDRAEADL-TTSVVAASNFDSEHTGGDHVTKHDKSTMIER----LKVISNEAAEYADRCRRNNWIEQDGELEPVGSPGVCA-------------EALCARIEGVLSLA-KKAGGGINPYFLQLTGAKGAGDRRLRQSSSSGFGGFSL--DDIQCTSGYCDLTARLKAARDVMLPIVEEQTSLGSLKVSLLGL----QIDLEQAVGSRD--ESRWQGIYDELSVLNAAFAEMKETNNQRDVEADSARAAVAGINVMDNEDLEERFLVKADISWVQRELQRLWEALNSHALAAIASNS-------TTSSSRSPALRSASVLPHKGPSKENPETAGEES---------------DSSRPSTPVTRVVGAANICGGYGEAGGGGGKVVLPYGDTTSRLSFHEGSPLIKDLLRKTSRLDQQMLSKADNEEVMSALSSIGNKLRKISSTIPGLQDAISNKVERKDLTKLAALISHGGGEDS-----NNDENNPDEIPAVLASRLNSKFRCLSCDRPLPTIGPPGPPKFGLKDGLALNGSGTPSSPQRYRKPGVRGATPEGGIGASSRPRSGSPANISSLCADTGGDVVGWGGGSSTRATTPPGTVDCSVDVLGSPSTGQTSVSCKRRDVGHGVTENQYHHPPGRLDPIGPNAPGEQIVGVMSRYPRMMPPPSRIRTAAGGGGAGIGSRPGSSGG 3997
D PES E+ +EIPGFPK K + GF NL GHLEKL++NA SI HVLE LCGGLDRLE K+D N+S++ ARLANIVHH++GEADEDTMSAW +I GSP +G RRRGSF G+Q AS S DS F EL +G D N G E++ + +S + P V+ A +A E E + +++ + +K +L I SS T G P +++++ G+++ + RRSNQDDQS GS + + E NDV V K S + +EA + + KT + SI S D IA+QRW+WAFGR+C L+RRRKRKQ EIM+QRATDRTVRMGSRVS++EKRLDET + + + +LR K+ +H+ +IKNLN V EL L+G+E++ G V T+ V XXXXXXXX IR++G++LED+DD+YARSEEA+R A++R+G+ VDE+RL SLE KK Q+RLSEL ++ E G GA + IE E PEE ERM RLLK A E L DLDKI+D + + AA N ++ H G ++ ++ ++ L+ +S A E + C E + +G G A EALC I+ +LS K N L TG RQ S G GG L DDI C +G DL RL AARD +LP++ E++S+GSL+V+ LGL + +LE+ +RD E RW + +S L+ + +++K++ + R ++ + EDLEER KAD+SWVQRELQRLW+ALN+ A+AA+ + S T P+ ++ + NPETAG+E S PS+ ++ +G G GG+ R SF+EG+ LIKDL++KTSRL+QQM +KADNEEVM AL+S+GNKLRK+ IP +Q+ ++NK+ERKDL KL +++S+GGG + +N + AV+ASRLNSKFRCLSCDRPLP +GPPGPPK G GL++ G+GTP SPQ+ T GA R GSPA S D G DV GWG GSS PG D+ + G +RR ++ PPGRL+P+G N GE + GV+SRYPRMMPPPSRIRTAAGG GIGSRP SS G
Sbjct: 40 DGPESLEDGLEIPGFPKPSKPE---GFTGNLQGHLEKLSSNARSIHHVLETLCGGLDRLEKKMDTNSSQVEARLANIVHHISGEADEDTMSAWSSIAGGXXXXAGSPTDLGTAPSLRRRGSF--GMQMASCSEDSPFDFRNDKISLDEELANVGRDGDESEDVVTSFGGVVERAKDVALQNEGGGRGEVERAAILTAPGNSSSAQATLKPTVVAAGPSASETLENTDEHQNPSEAK-DLSSI--SSPTDTGSPREEDRELPT-----------GLVSGGEDTNDLHPQRRRSNQDDQSDGSNSKLNSARAEEGRNDVMVVSKQESSVGGESVLGEEAEVPGEGNDFVKTA---FSPQASIDSGVLDSRLIARQRWIWAFGRICQLVRRRKRKQFEIMSQRATDRTVRMGSRVSVVEKRLDETTEHLLVVNQLRDKSGSHTAQIKNLNEMVKELCKLLGMEEKFNGIVHATKKMVEEKFKSDMTELETRLASGHRXXXXXXXXEIRRNGTKLEDMDDRYARSEEALRRAEERIGEXXXXXXXXXXXXXXXXXXXXVDEDRLGSLENLKKAHQRRLSELRVQL-ESGTPAAGGA---VPIETE-PEETDAERMARLLKTAGTATEFLAEDLDKILDSNGGNAGDATATAADNAEANHELGQVLSARSSASNVDHALQELRHVSVNAVECSRLCNDVASASGQAERDEIGPDGGGAGSDSNVDAAVRRVEALCGHIQDLLSTQDKNISSSKNKAELSATG------EIERQGSLEGNGGVGLKIDDIVCPNGRKDLVQRLTAARDALLPVIGERSSVGSLRVAFLGLTASVRANLEEKQ-ARDLMEERWNDLRGRVSGLDTSVSDIKDSLHDEG----HHRYGSLDMDSDNGEDLEERLGCKADVSWVQRELQRLWDALNARAMAAVGAMSPRTGAGVTEGHGGDPSRPRSAPPTNYDKENHNPETAGQEEGDLDASPSQANSRVISGSLPSSALSTALGXXXXXXXXXXQGAVGGR----------RASFNEGASLIKDLMKKTSRLEQQMATKADNEEVMKALASVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGGTGEPPPGGHEGPHNNGDGSAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGAS-GLSMAGAGTPRSPQKTSSQQRLKLTAAEEPGADKNSRPGSPATTSPAVEDVG-DVAGWGRGSSNMMI--PGGAS---DMESAYGNGGKDAGARRRQKQQHRQHHEMDQPPGRLEPLGAN--GEHMAGVLSRYPRMMPPPSRIRTAAGG---GIGSRPSSSSG 1299
BLAST of mRNA_H-paniculata_contig1991.5086.1 vs. uniprot
Match: A0A6H5LPN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPN1_9PHAE) HSP 1 Score: 575 bits (1481), Expect = 2.550e-177 Identity = 509/1392 (36.57%), Postives = 683/1392 (49.07%), Query Frame = 2
Query: 353 MSLSSTTFPVLTDADSPESSEE-MEIPGFPKAPKSKHRVGFAANLHGHLEKLAANATSISHVLEALCGGLDRLEHKVDANASEMAARLANIVHHVTGEADEDTMSAWENI------NLGSP--VGDNSVARRRGSFTLGLQGASFSGDSRF-----------ELDEIG------ED------------------NSGSETRELDSL--------TSQTEAVVPKVLEATK-AADEPAEKSKGYEDLTRSKCNLIVIANSSATMAGVPGGKNKDVVPEEEQAVTKPNKGILASSD--------HRRSNQDDQSQGS--EYINFEENENENDVSPVDKVGPS----------KSARLSDDEAGFFNQPANAAKTGEGQIDLEESIGSASDWHYI-AQQRWLWAFGRVCHLLRRRKRKQLEIMTQRATDRTVRMGSRVSIMEKRLDETRDAFIKMERLRAKNTTHSCEIKNLNAKVAELSALIGVEDRVKGFVQVTQAHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIRQHGSRLEDLDDQYARSEEAVRHAQDRLGDVQEEVNTATQSIVELERQLRVDEERLDSLELAKKVQQQRLSELGQKVGEGGVQPGVGADNDLSIEHEAPEEIATERMTRLLKAAAIGLELLTVDLDKIVDRAEADL-TTSVVAASNFDSEHTGGDHVTKHDKSTMIER----LKVISNEAAEYADRCRRNNWIEQDGELEPVGSPG------------VC-AEALCARIEGVLSLAKKAGGGINPYFLQLTGAKGAGDRRLRQSSSSGFGGFSL--DDIQCTSGYCDLTARLKAARDVMLPIVEEQTSLGSLKVSLLGLQIDLEQAVGSRD-----ESRWQGIYDELSVLNAAFAEMKETNNQRDVEADSARAAVAGINVMDNEDLEERFLVKADISWVQRELQRLWEALNSHALAAIASNST-TSSSRSPALRSASVLPHKGPSKE------NPETAGE-ESD-SSRPSTPVTRVVGAANICGGYGEAGGGGGKVVLPYGDTTS--RLSFHEGSPLIKDLLRKTSRLDQQ--------------------------------------------------------------MLSKADNEEVMSALSSIGNKLRKISSTIPGLQDAISNKVERKDLTKLAALISHGGGEDS-----NNDENNPDEIPAVLASRLNSKFRCLSCDRPLPTIGPPGPPKFGLKDGLALNGSGTPSSPQRYRKPGVRGATPEGGIGASSRPRSGSPANISSLCADTGGDVVGWGGGSSTRATTPPGTVDCSVDVLGSPSTGQTSVSCKRRDVGHGVTENQYHHPPGRLDPIGPNAPGEQIVGVMSRYPRMMPPPSRIRTAAGGGGAGIGSRPGSSGG 3997
MS S + F TD D PES E+ +EIPGFPK K GF NL HLEKL++NA+SI HVLE LCGGLDRLE KVD N+S++ ARLANIVHH++GEADEDTMSAW ++ GSP +G RRRGSF G+Q AS D F EL ++G ED N G E++ +S +A + + AT+ +A E EK+ +++ + +K + + S T AG P +++D+ G+++ + RRSNQDDQS GS + + E NDV V K S + A G + S ++ D + ++QRW+WAFGR+C L+RRRKRKQ EIM+QRATDR VRMGSRVS++EKRLDET + + + +LR K+ +H+ +IKNLN V EL L+G+E+++ G V T+ + XXXXXXXXXXXXX +LED+DD+YARSEEA+R A+ EL ++ E G GA + IE E PEE +RM RLLK A+ E L DLDKI+D + + AA N ++ H G + + I+ L+ +S +A E + C E + +G G VC AEALC RI+ +LS +K N + A RQ S G GG L DDI C++G DL RL AARD +LP++ E++S+GSL+V+LLGL + + + E RW + +S LN + +++K++ ++ R ++ + EDLEER KAD+SWVQRELQRLW+ALN+ +AA+ + S T + P PS + NPETAG+ E D + PS +RV+ + A G R S +EG+ LIKDL++KTSRL+QQ M +KADNEEVM ALSS+GNKLRK+ IP +Q+ ++NK+ERKDL KL +++S+GGG + +N + AV+ASRLNSKFRCLSCDRPLP +GPPGPPK G GL++ G+GTP SPQ+ + T GA R GSPA S D G DV GWGG PG D+ + G +R ++ PPGRL+P+G N GE + GV+SRYPRMMPPPSRIRTAAGG GIGSRP SSGG
Sbjct: 1 MSFSVSRF--ATD-DGPESLEDGLEIPGFPKPSKPG---GFMGNLQEHLEKLSSNASSIHHVLETLCGGLDRLEKKVDTNSSQVEARLANIVHHISGEADEDTMSAWSSLAGGXXXXAGSPTELGTVPSLRRRGSF--GMQMASCGEDPPFDFRNDKISLDEELAKVGRGGDESEDVVTSFEGVVERAKDVSLKNEGGRRGEVERAAILNTPGNSSSAQATLKTTVVATRPSASETLEKTVEHQNPSEAK---YLSSIWSPTNAGSPREEDRDLPT-----------GLVSGGEDTNDLHPPRRRSNQDDQSDGSNSKLNSARAEEGRNDVMVVSKQASSVXXXXXXXXXXXXXXXXXXESVLGEEAEGPGEGNDFVKTAFSPQASIDSGVLDSRQRWIWAFGRICQLVRRRKRKQFEIMSQRATDRAVRMGSRVSVVEKRLDETTEQLLVVNQLRDKSGSHTAQIKNLNEMVKELCKLLGMEEKINGIVHATKKLMEEKFKSDMTELETRIXXXXXXXXXXXXXXXXXXXXKLEDMDDRYARSEEALRRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRVQL-ESGTPAAGGA---VPIETE-PEETGEDRMARLLKTASTATEFLAEDLDKILDNNGGNAGDATATAAGNAEANHELGQVQSARSSDSNIDHALQELRHVSIDAVECSRLCNDVANASGQAEGDEIGPDGGGAGSDHNVDAAVCRAEALCGRIQDLLSAHEK-----NISSNKKKAELSATFEIERQGSLEGNGGMGLKLDDIVCSNGRKDLVQRLTAARDALLPVIGERSSVGSLRVTLLGLTASVRANLEEKQARKLMEERWNDLRGRVSELNTSVSDIKDSL----LDEGHHRYGSLDMDSDNGEDLEERLGCKADVSWVQRELQRLWDALNARTMAAVGALSPRTGAGVREGQGGDPSRPRSTPSTDYDKENHNPETAGQAEGDLEASPSQANSRVISGSLPSSALSTALGXXXXXXXXXQGAVGGRRASVNEGASLIKDLMKKTSRLEQQRLHERVLVMFHFSAMTVCCMFTPPLSLLPSWLGDATSRFDFFDFVLHPRPRYHAVWNPTVRKMATKADNEEVMKALSSVGNKLRKVGIVIPAMQEELANKIERKDLAKLVSMVSNGGGTGEPPPGGHEGPHNNGDSSAVVASRLNSKFRCLSCDRPLPALGPPGPPKLGAS-GLSIAGAGTPRSPQKPKSQQRLKLTAAEEPGAEKNARPGSPATTSPAVEDVG-DVAGWGGXXXXXX--XPGGAS---DMESTYGNGGKDAGARRXXXXXHRQQHGMDQPPGRLEPLGAN--GEHMAGVLSRYPRMMPPPSRIRTAAGG---GIGSRPSSSGG 1344
BLAST of mRNA_H-paniculata_contig1991.5086.1 vs. uniprot
Match: A0A835YKY1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKY1_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.750e-5 Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = 2
Query: 3167 LRKTSRLDQQMLSKADNEEVMSALSSIGNKLRKISSTI---PGLQDAISNKVERKDLTKLAALISHGGGEDSNNDENNPDEIPAVLASRLNSKFRCLSCDRPLPT 3472
+ + ++ M +KAD+ ++ +AL + ++LRKI+S + L+ + KV+RKDL KLAA++S + N PD + A++ KF+CLSCDRPLP+
Sbjct: 669 MSQLEKMHHTMGTKADSNQLDAALKVVNSQLRKITSDVMPKEKLEGYLRTKVDRKDLHKLAAVLSSAVDVGA---MNLPDLDSSAAATKSVPKFKCLSCDRPLPS 770 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1991.5086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1991.5086.1 >prot_H-paniculata_contig1991.5086.1 ID=prot_H-paniculata_contig1991.5086.1|Name=mRNA_H-paniculata_contig1991.5086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1217bp MSLSSTTFPVLTDADSPESSEEMEIPGFPKAPKSKHRVGFAANLHGHLEKback to top mRNA from alignment at H-paniculata_contig1991:9436..18910+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1991.5086.1 ID=mRNA_H-paniculata_contig1991.5086.1|Name=mRNA_H-paniculata_contig1991.5086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9475bp|location=Sequence derived from alignment at H-paniculata_contig1991:9436..18910+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1991:9436..18910+ >mRNA_H-paniculata_contig1991.5086.1 ID=mRNA_H-paniculata_contig1991.5086.1|Name=mRNA_H-paniculata_contig1991.5086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7302bp|location=Sequence derived from alignment at H-paniculata_contig1991:9436..18910+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |