mRNA_H-paniculata_contig1985.5069.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1985.5069.1
Unique NamemRNA_H-paniculata_contig1985.5069.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1985.5069.1 vs. uniprot
Match: D7FV70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV70_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.280e-61
Identity = 102/116 (87.93%), Postives = 109/116 (93.97%), Query Frame = 1
Query:    1 LREETRIIKMVLSNISIGISSPFSSDLISTTKFRYIKAPRVEMSAEGKAEDAKRRKVQEEDSAFGTYAGAGGKRLVYRERTPAGNYRIIEESVNEEMTREEMLDKRATKKADRHCN 348
            LREETRIIKMVLSN+SI ISSPFSSDLISTT FRYIKAPR+E+SAE KAE+ K+RKVQEEDSAFGTYAGAGGKRLVYRERTPAGNYRIIE +V+E MTREEMLD RATKKADRHCN
Sbjct:  107 LREETRIIKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEERKKRKVQEEDSAFGTYAGAGGKRLVYRERTPAGNYRIIETTVDEAMTREEMLDMRATKKADRHCN 222          
BLAST of mRNA_H-paniculata_contig1985.5069.1 vs. uniprot
Match: A0A835Z5I8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.860e-28
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 LREETRIIKMVLSNISIGISSPFSSDLISTTKFRYIKAPRVEMSAEGKAEDAKRRKVQEEDSAFGTYAGAGGKRLVYRERTPA--GNYRIIEESVNEEMTREEMLDKRATKKADRHC 345
            L +ETR+++MVLS+   G+SS FS+DLISTT F+Y+ APR E  AE  A  AKR ++QEED AFGTY+  GG ++VYR +     G Y I+     + MTREE+L+ R+ KKADR+C
Sbjct:   75 LAQETRLVRMVLSDAHAGVSSAFSTDLISTTAFQYVSAPRGE--AEDPAVAAKRARLQEEDRAFGTYSSGGGSKVVYRVKKAGVYGGYEIVTADSKKSMTREELLNVRSKKKADRYC 189          
BLAST of mRNA_H-paniculata_contig1985.5069.1 vs. uniprot
Match: A0A024UEL5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UEL5_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.170e-28
Identity = 62/120 (51.67%), Postives = 80/120 (66.67%), Query Frame = 1
Query:    1 LREETRIIKMVLSNISIGISSPFSSDLISTTKFRYIKAPRVEMSAEGKAEDAKRRKVQEEDSAFGTYAGA--GGKRLVYRERTPA--GNYRIIEESVNEEMTREEMLDKRATKKADRHCN 348
            L+EETRI+KMVLS++S+ ISSPFSSDL+STT F YIKAP  E+  +      + +K  EE SAFGTYAG    G    YR +     G Y II+E+ +   +REE+LD R+ +K DRHCN
Sbjct:   92 LKEETRIVKMVLSDVSVSISSPFSSDLVSTTTFWYIKAPPEEVDKDAVESKKRSKKNDEEASAFGTYAGGTTAGTEFTYRVKKAGVYGGYAIIKETADANRSREELLDIRSKRKGDRHCN 211          
BLAST of mRNA_H-paniculata_contig1985.5069.1 vs. uniprot
Match: W4H648_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H648_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.910e-27
Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 LREETRIIKMVLSNISIGISSPFSSDLISTTKFRYIKAPRVEMSAEGKAEDAKRRKVQEEDSAFGTYAG--AGGKRLVYRERTPA--GNYRIIEESVNEEMTREEMLDKRATKKADRHCN 348
            ++EETRI+KMVLS++SI ISSPFSSDL+STT F YIKAP  E+  +      + +K +EE  AFGTYAG  + G    YR +     G Y +++E+ +   +RE++LD R+ +K DRHCN
Sbjct:   91 MKEETRIVKMVLSDVSISISSPFSSDLVSTTTFSYIKAPPEEIDQDAIETKKRSKKNEEETFAFGTYAGGTSAGSEFTYRVKKAGAYGGYAVLKETADANRSREDLLDIRSKRKGDRHCN 210          
BLAST of mRNA_H-paniculata_contig1985.5069.1 vs. uniprot
Match: A0A6G0XV17_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV17_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.150e-27
Identity = 62/119 (52.10%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    1 LREETRIIKMVLSNISIGISSPFSSDLISTTKFRYIKAPRVEMSAEGKAEDAKRRKVQEEDSAFGTYAGAG--GKRLVYRERTPA--GNYRIIEESVNEEMTREEMLDKRATKKADRHC 345
            L+EETRI+ MVLS++SI ISSPFSSDLISTT F YIKAP  E+  +      +R+  QEE  AFGTYAG    G    YR +     G Y I++E+ +   +REE+LD R+ KK DRHC
Sbjct:   93 LKEETRIVTMVLSDVSISISSPFSSDLISTTTFSYIKAPPEEVDKDELETKKRRKNEQEESFAFGTYAGGTTVGTEYTYRVKKSGAYGGYAIVKETADSNRSREELLDIRSKKKGDRHC 211          
BLAST of mRNA_H-paniculata_contig1985.5069.1 vs. uniprot
Match: A0A7S3ZK63_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZK63_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.450e-26
Identity = 60/108 (55.56%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    1 LREETRIIKMVLSNISIGISSPFSSDLISTTKFRYIKAPRVEMSAEGKAEDAKRRKVQEEDSAFGTYAGAGGKRLVYRERTP-----AGNYRIIEESVNEEMTREEML 309
            L EETRI+KMVLS++SI ISS FSSDL+STT FRY+ APRVE SA  K  DA +R+V  ED A G YAG GG  LVYR R       +  ++I+ E + E  TR E+L
Sbjct:  105 LTEETRIVKMVLSDVSIAISSAFSSDLVSTTAFRYVAAPRVEQSAADKERDAAQRRVLREDGAVGDYAGGGGTTLVYRTRKKGAVGGSNGWKIVTEKLAEPKTRTELL 212          
BLAST of mRNA_H-paniculata_contig1985.5069.1 vs. uniprot
Match: A0A485LKB6_9STRA (Aste57867_21986 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKB6_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.490e-26
Identity = 60/119 (50.42%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    1 LREETRIIKMVLSNISIGISSPFSSDLISTTKFRYIKAPRVEMSAEGKAEDAKRRKVQEEDSAFGTYAGA--GGKRLVYRERTPA--GNYRIIEESVNEEMTREEMLDKRATKKADRHC 345
            L+EETRII MVLS++S+ ISSPFS+DL+STT F YIKAP+ E+         KR+K  EE  AFGTYAG    G    YR +     G Y I++E+ +   +RE++LD R+ KK DRHC
Sbjct:   94 LKEETRIITMVLSDVSVSISSPFSTDLVSTTTFSYIKAPKEEVDVADLENKKKRKKNDEELFAFGTYAGGTTAGTEFTYRVKKAGVYGGYAILKETADSNRSREDLLDIRSKKKGDRHC 212          
BLAST of mRNA_H-paniculata_contig1985.5069.1 vs. uniprot
Match: A0A1V9YA44_9STRA (Niemann-Pick C1 protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA44_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.090e-26
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 LREETRIIKMVLSNISIGISSPFSSDLISTTKFRYIKAPRVEMSAEGKAEDAKRRKVQEEDSAFGTYAGA--GGKRLVYRERTPA--GNYRIIEESVNEEMTREEMLDKRATKKADRHCN 348
            L+EETRI++MVLS++SI ISS FSSDL+STT F YIKAP        K    K++K  EE  AFGTYAG    G +L YR +     G Y II+E+ +   +REE+LD R+  K DRHCN
Sbjct:   93 LQEETRIVRMVLSDVSISISSAFSSDLVSTTTFHYIKAPPDXXXXAQKELATKKQKKDEEGFAFGTYAGGTTAGSQLTYRVKKSGVYGGYTIIKETADTSRSREELLDLRSKMKGDRHCN 212          
BLAST of mRNA_H-paniculata_contig1985.5069.1 vs. uniprot
Match: M4BTL8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTL8_HYAAE)

HSP 1 Score: 102 bits (253), Expect = 1.580e-24
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    1 LREETRIIKMVLSNISIGISSPFSSDLISTTKFRYIKAPRVEMSAEGKAEDAKRRKVQ-EEDSAFGTYAGAG--GKRLVYRERTPA--GNYRIIEESVNEEMTREEMLDKRATKKADRHC 345
            L +ETRI++MVLS++S  +SS FSSDL+S+T F YI+AP  +   EG+   A+ +K + +E++AFGTYAG    G +L YR +     G Y I++E  NEE +RE++LD RA KK DRHC
Sbjct:  101 LVDETRIVRMVLSDVSASVSSAFSSDLVSSTPFYYIRAPPDDKKHEGEELKARLKKHRKDEETAFGTYAGGTEKGGQLTYRVKKSGAYGGYAIVKEDTNEERSREDLLDIRAKKKGDRHC 220          
BLAST of mRNA_H-paniculata_contig1985.5069.1 vs. uniprot
Match: A0A067CG03_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CG03_SAPPC)

HSP 1 Score: 101 bits (251), Expect = 2.680e-24
Identity = 60/120 (50.00%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 LREETRIIKMVLSNISIGISSPFSSDLISTTKFRYIKAPRVEMSAEGKAEDAKRRKVQEEDSAFGTYAGA--GGKRLVYRERTPA--GNYRIIEESVNEEMTREEMLDKRATKKADRHCN 348
            L+EETRI+KMVLS++S+ ISS FSSDL+STT F YIKAP  E                EE  AFGTYAG    G    YR +     G Y I++E+ +   +REE+LD RA KK DRHCN
Sbjct:   95 LQEETRIVKMVLSDVSVSISSAFSSDLVSTTTFHYIKAPPDEXXXXXXXXXXXXXXSDEEGFAFGTYAGGTTAGSEYTYRVKKSGVYGGYAIMKETADANRSREELLDLRAKKKGDRHCN 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1985.5069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV70_ECTSI2.280e-6187.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5I8_9STRA1.860e-2852.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A024UEL5_9STRA3.170e-2851.67Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4H648_9STRA4.910e-2748.33Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6G0XV17_9STRA5.150e-2752.10Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3ZK63_9STRA1.450e-2655.56Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A485LKB6_9STRA1.490e-2650.42Aste57867_21986 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YA44_9STRA4.090e-2651.67Niemann-Pick C1 protein n=1 Tax=Achlya hypogyna Ta... [more]
M4BTL8_HYAAE1.580e-2449.17Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A067CG03_SAPPC2.680e-2450.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1985contigH-paniculata_contig1985:21339..22404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.3
Seed ortholog evalue1.9e-42
Seed eggNOG ortholog2880.D7FV70
Hectar predicted targeting categoryother localisation
EggNOG OGs2A1XA@1,2RY1S@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_007330.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size351
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1985.5069.1prot_H-paniculata_contig1985.5069.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1985 21339..22377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929500.085779-CDS-H-paniculata_contig1985:21338..215151622929500.085779-CDS-H-paniculata_contig1985:21338..21515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 21339..21515 -
1691480887.9418476-CDS-H-paniculata_contig1985:21338..215151691480887.9418476-CDS-H-paniculata_contig1985:21338..21515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 21339..21515 -
1622929500.1071818-CDS-H-paniculata_contig1985:22230..223771622929500.1071818-CDS-H-paniculata_contig1985:22230..22377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 22231..22377 -
1691480887.953027-CDS-H-paniculata_contig1985:22230..223771691480887.953027-CDS-H-paniculata_contig1985:22230..22377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 22231..22377 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929500.121875-UTR-H-paniculata_contig1985:22377..224041622929500.121875-UTR-H-paniculata_contig1985:22377..22404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 22378..22404 -
1691480887.9617665-UTR-H-paniculata_contig1985:22377..224041691480887.9617665-UTR-H-paniculata_contig1985:22377..22404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 22378..22404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1985.5069.1

>prot_H-paniculata_contig1985.5069.1 ID=prot_H-paniculata_contig1985.5069.1|Name=mRNA_H-paniculata_contig1985.5069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MVLSNISIGISSPFSSDLISTTKFRYIKAPRVEMSAEGKAEDAKRRKVQE
EDSAFGTYAGAGGKRLVYRERTPAGNYRIIEESVNEEMTREEMLDKRATK
KADRHCN*
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mRNA from alignment at H-paniculata_contig1985:21339..22404-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1985.5069.1 ID=mRNA_H-paniculata_contig1985.5069.1|Name=mRNA_H-paniculata_contig1985.5069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1066bp|location=Sequence derived from alignment at H-paniculata_contig1985:21339..22404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCGAGAGGAGACGCGCATCATCAAGATGGTTCTGAGCAATATTTCCAT AGGAATCAGTAGCCCATTTAGCTCCGACTTGATCTCGACCACCAAATTTC GGTACATCAAGGCGCCGCGGGTGGAGATGAGTGCTGAGGGGAAGGCAGAA GATGCCAAGCGAAGGAAAGTGCAGGTAGGGAAGTAATCAACACAAATGAC GACAGTATCGTGTGCTTTCATGGCAGTCAGCCGTACCATGTGTCTCCGGC TGAAGAACAAGATGCCTGAAATGTGTTTCCCCCCCACACCAGAACACCGA AACACCCCAACCCTCATCAACAATCGGATCCAAATACAAGCACTTAAAGT TAGTGTATAATAAAATTGGTGTAAGTTGGGCTTGTTTTTGGTGTTTTGGT GTTTTGGTGAGTTGGAGGACATTTAGTAATCATACAATAGTCAAAAGCGA TAACCATTTCGTGTTGCACAACGAAAAAAGCACTTTTACAGTTATGGTTA TAATACAACAATGTCTACTCTAAAGGTGTGGATTGTTTTACTTTTAACAG TCAAAGGGTTGGGGTTGTTTTTGGCCTTACGGTGAGGGGGGACCTTTATC GCCTAGGGATCGTGTCAAAGTGTATTTTTACTGTCTTTGCATCCATGTCA CAGTCACTTACTCCCGTGGTGAGTTCTTGTCGTGAAGCTGCTAGCCGCAC GGCAGTAATGCCAAAGGATTTGATGCCAGCCCTATAATAACAGTGCTCTA TCACTCAGATGTGCACTAACCAAAGTAGGGCGAACGGACTTCCGCCACGC ACAAGAGCGGTGCCTTTGGTATATTTTCCATATGGTGTCATTTACCTTCC CTTCTTGCTTCGTCTATGTTTAATATCATGCCCTTGAAGGAAGAAGACAG CGCGTTCGGAACGTACGCCGGTGCAGGCGGCAAACGCTTGGTGTATCGGG AAAGAACCCCAGCAGGAAACTATCGCATCATCGAAGAGAGCGTGAACGAG GAGATGACTCGGGAGGAAATGCTGGATAAGCGCGCCACGAAGAAAGCGGA TCGGCACTGTAATTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1985:21339..22404-

>mRNA_H-paniculata_contig1985.5069.1 ID=mRNA_H-paniculata_contig1985.5069.1|Name=mRNA_H-paniculata_contig1985.5069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig1985:21339..22404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCTGAGCAATATTTCCATAGGAATCAGTAGCCCATTTAGCTCCGA
CTTGATCTCGACCACCAAATTTCGGTACATCAAGGCGCCGCGGGTGGAGA
TGAGTGCTGAGGGGAAGGCAGAAGATGCCAAGCGAAGGAAAGTGCAGATG
GTTCTGAGCAATATTTCCATAGGAATCAGTAGCCCATTTAGCTCCGACTT
GATCTCGACCACCAAATTTCGGTACATCAAGGCGCCGCGGGTGGAGATGA
GTGCTGAGGGGAAGGCAGAAGATGCCAAGCGAAGGAAAGTGCAGGAAGAA
GACAGCGCGTTCGGAACGTACGCCGGTGCAGGCGGCAAACGCTTGGTGTA
TCGGGAAAGAACCCCAGCAGGAAACTATCGCATCATCGAAGAGAGCGTGA
ACGAGGAGATGACTCGGGAGGAAATGCTGGATAAGCGCGCCACGAAGAAA
GCGGATCGGCACTGTAATTGAGAAGAAGACAGCGCGTTCGGAACGTACGC
CGGTGCAGGCGGCAAACGCTTGGTGTATCGGGAAAGAACCCCAGCAGGAA
ACTATCGCATCATCGAAGAGAGCGTGAACGAGGAGATGACTCGGGAGGAA
ATGCTGGATAAGCGCGCCACGAAGAAAGCGGATCGGCACTGTAATTGA
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