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Homology
BLAST of mRNA_H-paniculata_contig1985.5068.1 vs. uniprot
Match: A0A6H5JMA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA0_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 4.350e-13 Identity = 59/127 (46.46%), Postives = 69/127 (54.33%), Query Frame = 2
Query: 1457 RSRRGRRGVMILRRNRQACAALRSRDDLAELQFAECRVPEAVRSWAGRARAM-------------------------RSNRLSHDA---AASTWRSRTLQVALAQWVVAYLGDGESRRRRQAWRHAL 1753
R+++ +R V +L+RN QA ALRSRDDLA+L FAE RVP AV+ W RARA R RL D+ A S WRSR L ALA+WV LGD E RRR AWR AL
Sbjct: 411 RAQQMQRVVTMLKRNWQARMALRSRDDLADLHFAEWRVPNAVQEWRQRARASSNLALHARTRSPLPFACGGRHTESSRLKRLCRDSQNIATSKWRSRALPAALARWVGHSLGDKEKRRRLLAWRDAL 537
BLAST of mRNA_H-paniculata_contig1985.5068.1 vs. uniprot
Match: D7G050_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G050_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 5.780e-13 Identity = 50/89 (56.18%), Postives = 60/89 (67.42%), Query Frame = 2
Query: 1457 RSRRGRRGVMILRRNRQACAALRSRDDLAELQFAECRVPEAVRSWAGRARAMRSNRLSHDAAASTWRSRTLQVALAQWVVAYLGDGESR 1723
R+++ +R V +L+RN QA ALRSRDDLA+L FAE RVP AV+ W RARA R R S + A S WRSR L ALA+W LGD E R
Sbjct: 412 RAQQMQRVVTMLKRNWQARMALRSRDDLADLHFAEWRVPYAVQEWRQRARASRLCRDSQNIATSKWRSRALPAALARWAGHSLGDKEKR 500
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 2335 |
| Cds size | 1305 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1985.5068.1 >prot_H-paniculata_contig1985.5068.1 ID=prot_H-paniculata_contig1985.5068.1|Name=mRNA_H-paniculata_contig1985.5068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=435bp
MEACMSGLDSLTSPAKVRCVSGSDCYGDRPADCAAPTTQVGHTRHRFYGA
ATLSPISATSCLDQPKRCGKCTTRTASSSIPLRCVDTTTISSTDAMLRVR
RPAGNDNLHEQRDVGIPLSPPQPPTPLSVPQAAAAPPSTSPPPPESVNTG
RNVGNVSRAAAEAWTAAEAWAFTIASATTTAATTGATVGTVAEGGAGGHT
KTTAKAAALELAKPREFFVISGGDQDNSRCNCEGVNCRLVNRPLLTPTAV
SPTTAGCAGNPAATVHNHDTTHFFATKGSPDSRVQTVVNVRSKPSPTRPP
PPPPPLRAHKNPQANRRKRSSFESVGYSRSVMEAGFVGQFVPLRGAAAVV
LQRIEHGEKVWRRHVQWTGMAMLRAHCLWVRELRSMEIVASNHHKCVCLK
RGFKGLKARVEWIRRRRRAVSTIAAAARDGAEGE* back to topmRNA from alignment at H-paniculata_contig1985:16025..19444- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1985.5068.1 ID=mRNA_H-paniculata_contig1985.5068.1|Name=mRNA_H-paniculata_contig1985.5068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3420bp|location=Sequence derived from alignment at H-paniculata_contig1985:16025..19444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCCCTGCTCGCATTCGCGAATATGGTTTCCAATGAGGTAAGCGTGAAC
CTAAACCCTAAAGCCTCGCCCAGAAAATTTTGAATTTTGTGCAATACTCT
GGAAACATTGCATACAAATTACTTACACTCTGCTGTAGGAGATGATAGAG
TACTACCGCACACTTCAGTAGTCTGTGTTGGCGGTATCGTTGGGGTGTTC
TTGCCTAATCGGAAATTCGTAATATTTGCCTCATCAATGATTGGCGTCCT
CATTTCCCTCTCAAGCGCATCCAGCTTTCGGTTGTAGTTTGCAGTATTCC
GGCATTCAGCCCTGAAGTAGGGGAATGATGTTCAACGAGACAAAGCGAGC
GTGTTAACAACGCCCTGTGAGTAGTCAAGATACTCTCGAACATCCCCTGA
GAGTCAAAATACAGAGCAAAGCACCAACCTCCTTGATTACCTTCTATTGC
CGCTGTCCTTGCACCTCACGTCTACAACGACAGTGCACTTGGCACTACTT
GAGCTGCGTGGAGGAAGGAGAAGCCTGCAGTAAGCGCCTGCATCTACAAC
CAGGTTAAGGTGGCTTTGAGGTGCGTAGCAACTCTCTTGTCCAAACTAAT
GGCGATCAGAAATCGTCTAGCGCACGGAGTCCGCCGTCTTGTGGTTATTA
CGCCGTGCTGGGGCTGCGATTCCTTCGTCTGCCCTTAATTCTCCCACCCT
GGTTGCCTTGCAAGCAGGTCGGAGCGAGAGTGAGGGGACGAAAGAGCTCC
TATCTGTCCGCAAAACGAGGGATGGAGGCTTGTATGTCCGGTCTTGACAG
TCTCACTTCACCAGCAAAGGTGCGTTGTGTTTCTGGGAGCGATTGCTATG
GTGACCGCCCCGCCGATTGTGCTGCTCCTACTACTCAAGTTGGACACACT
AGGCACCGGTTCTATGGTGCTGCGACTTTGAGCCCGATCTCCGCTACCAG
CTGCCTAGATCAGCCTAAAAGATGTGGAAAATGCACCACTAGAACCGCGT
CTTCGTCTATACCACTGCGGTGTGTCGATACCACGACTATATCGAGCACA
GACGCAATGTTGCGAGTGCGTCGTCCCGCTGGCAACGACAACCTTCACGA
GCAACGAGACGTGGGCATACCACTTTCTCCACCGCAACCACCAACGCCAC
TGTCGGTACCACAGGCGGCGGCAGCACCGCCCTCGACATCACCACCACCA
CCAGAATCTGTTAATACAGGGAGGAATGTAGGGAATGTCTCTCGAGCGGC
CGCTGAGGCTTGGACGGCAGCCGAAGCGTGGGCGTTTACGATAGCGTCGG
CCACTACGACAGCGGCAACAACGGGGGCAACAGTTGGTACGGTAGCCGAG
GGAGGAGCGGGTGGTCACACGAAGACAACGGCCAAAGCTGCGGCCTTGGA
GTTGGCGAAGCCTCGAGAGTTCTTTGTTATCTCGGGTGGAGATCAAGACA
ACAGCCGCTGCAATTGCGAGGGCGTAAACTGTCGTCTCGTCAACCGTCCT
CTGTTGACTCCGACGGCTGTGTCACCAACCACTGCGGGATGTGCGGGCAA
TCCCGCTGCTACTGTGCACAACCACGACACTACGCATTTCTTTGCGACAA
AGGGATCTCCTGACTCAAGAGTACAGACTGTTGTCAATGTCCGGTCAAAG
CCTTCCCCCACACGCCCGCCGCCGCCGCCGCCGCCGTTACGCGCCCATAA
GAACCCGCAAGCGAACCGGCGGAAGAGGTCATCTTTTGAGTCCGTGGGAT
ACTCCCGCTCCGTTATGGAAGCGGGATTTGTAGGCCAGTTTGTACCCTTA
CGAGGTGCGGCGGCAGTTGTTCTGCAAAGGATCGAGCATGGAGAGAAAGT
GTGGAGAAGACATGTGCAGTGGACGGGTATGGCCATGTTGAGAGCTCACT
GCCTGTGGGTGCGCGAGCTTAGGTCGATGGAAATCGTTGCTAGTAATCAT
CACAAGTGTGTGTGTTTGAAACGGGGCTTCAAAGGCTTGAAGGCGAGGGT
GGAGTGGATAAGAAGGAGGCGTAGGGCTGTGTCTACCATCGCCGCTGCCG
CTGCAGCAGTGGCTGACACATTTTATCGAGCGCGACGGGGCCGAAGGGGA
GTGATGATTCTGAGAAGGTACATTTTTTATGATGCAGCACATATTTCGTC
GTCAATCCCGTCAAACATGCAGATTCTATAGTATTTTATGTATTAGGATG
TACTACGTGTCCACAGATACCCGCTGACACTGCGGCCCAATGCCGTCCTT
TTCTTCAATTCAAGTACGATGTGGTTTCATACAAAGTGTTCTTCCGTGTT
ACAGAAGACGAGGTGCTTTGCGAGCGACTCCATCTAGCGCCCAGGCTTAT
CTTCCACAAGTTAATGACATCTAATCCGTGGCTTCGAAACGCGTCTGCCT
CTCCGTTCGGGTCAGGAACCGCCAGGCATGCGCGGCTCTCCGGTCCCGGG
ATGATCTGGCTGAATTGCAATTTGCCGAGTGTCGCGTACCTGAGGCCGTA
CGGTCTTGGGCCGGAAGGGCTCGAGCGATGAGGTGAGAGCAGGCAGAGAT
ACCGATAGCTTTTATTTTAGCACGTTTTGGATGAAAAAAAACAACTCTGG
ACCTGTGAAGGTCCGCATGGTCGATGGCTAATCTGCCAAAACTTGACAAT
TCCCGCGCTGCCCTCCTATCCTTCTCCACTTTATTCGCCGTTGTTGGAGG
TCCAACCGCTTGTCCCACGATGCGGCCGCGAGCACGTGGAGGTCAAGGAC
TCTTCAAGTTGCCTTAGCGCAATGGGTGGTGGCATATTTGGGAGATGGCG
AGAGCCGTCGCCGCCGCCAAGCGTGGCGACACGCGCTGCTTCAGGCACCA
CTGTATGCGGATGAAGACGAGGTAAAACGGGGGGAGGATGGCCACCGACT
GGATGAGATCCATACTTCGGGGAGAAGTGATAACTGTGGTAACACCAGGA
GCATTCTATGTGACGAAAATGTGCGCAAGGTTGTTGATGAGAGTATTTCA
TCACTTGAAACGCAGTCGCCGTCGCCACCGCTGCCGCCTCCCCCGGTACA
TGAAACTACAATCGGAATGACGAGAGGTGTCATCTCGACAGCATCGGCAG
AAGTTCTGGATTTAGGTTTACAAGGCGGTGCTACTGCCGATGGCCGCGAT
GAAGAGGGCAAGAATGAATGTGGGACAAGTGAAGTAGGGATGGATTATTG
TGAGATCACCAAGACTGTGGATCTCGTGATGAGGCCATCGGCCGTACCAT
GTAAAGGAGTGCGCAGAGAATACGGGGAGACAGCCGGGGCGATCGTAAGG
TATCGGCAAGTGGATGGTGCGAACCAACAATCGGTGTTGGATTGGGTCGG
GCCCAGAGCTGCAGATGGGCAAGGAGAACAAAATTCAACCAAGGCGGCAG
GGTGCTGCGGGGTAAAAGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig1985:16025..19444- >mRNA_H-paniculata_contig1985.5068.1 ID=mRNA_H-paniculata_contig1985.5068.1|Name=mRNA_H-paniculata_contig1985.5068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at H-paniculata_contig1985:16025..19444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCTTGTATGTCCGGTCTTGACAGTCTCACTTCACCAGCAAAGGT
GCGTTGTGTTTCTGGGAGCGATTGCTATGGTGACCGCCCCGCCGATTGTG
CTGCTCCTACTACTCAAGTTGGACACACTAGGCACCGGTTCTATGGTGCT
GCGACTTTGAGCCCGATCTCCGCTACCAGCTGCCTAGATCAGCCTAAAAG
ATGTGGAAAATGCACCACTAGAACCGCGTCTTCGTCTATACCACTGCGGT
GTGTCGATACCACGACTATATCGAGCACAGACGCAATGTTGCGAGTGCGT
CGTCCCGCTGGCAACGACAACCTTCACGAGCAACGAGACGTGGGCATACC
ACTTTCTCCACCGCAACCACCAACGCCACTGTCGGTACCACAGGCGGCGG
CAGCACCGCCCTCGACATCACCACCACCACCAGAATCTGTTAATACAGGG
AGGAATGTAGGGAATGTCTCTCGAGCGGCCGCTGAGGCTTGGACGGCAGC
CGAAGCGTGGGCGTTTACGATAGCGTCGGCCACTACGACAGCGGCAACAA
CGGGGGCAACAGTTGGTACGGTAGCCGAGGGAGGAGCGGGTGGTCACACG
AAGACAACGGCCAAAGCTGCGGCCTTGGAGTTGGCGAAGCCTCGAGAGTT
CTTTGTTATCTCGGGTGGAGATCAAGACAACAGCCGCTGCAATTGCGAGG
GCGTAAACTGTCGTCTCGTCAACCGTCCTCTGTTGACTCCGACGGCTGTG
TCACCAACCACTGCGGGATGTGCGGGCAATCCCGCTGCTACTGTGCACAA
CCACGACACTACGCATTTCTTTGCGACAAAGGGATCTCCTGACTCAAGAG
TACAGACTGTTGTCAATGTCCGGTCAAAGCCTTCCCCCACACGCCCGCCG
CCGCCGCCGCCGCCGTTACGCGCCCATAAGAACCCGCAAGCGAACCGGCG
GAAGAGGTCATCTTTTGAGTCCGTGGGATACTCCCGCTCCGTTATGGAAG
CGGGATTTGTAGGCCAGTTTGTACCCTTACGAGGTGCGGCGGCAGTTGTT
CTGCAAAGGATCGAGCATGGAGAGAAAGTGTGGAGAAGACATGTGCAGTG
GACGGGTATGGCCATGTTGAGAGCTCACTGCCTGTGGGTGCGCGAGCTTA
GGTCGATGGAAATCGTTGCTAGTAATCATCACAAGTGTGTGTGTTTGAAA
CGGGGCTTCAAAGGCTTGAAGGCGAGGGTGGAGTGGATAAGAAGGAGGCG
TAGGGCTGTGTCTACCATCGCCGCTGCCGCTATGGAGGCTTGTATGTCCG
GTCTTGACAGTCTCACTTCACCAGCAAAGGTGCGTTGTGTTTCTGGGAGC
GATTGCTATGGTGACCGCCCCGCCGATTGTGCTGCTCCTACTACTCAAGT
TGGACACACTAGGCACCGGTTCTATGGTGCTGCGACTTTGAGCCCGATCT
CCGCTACCAGCTGCCTAGATCAGCCTAAAAGATGTGGAAAATGCACCACT
AGAACCGCGTCTTCGTCTATACCACTGCGGTGTGTCGATACCACGACTAT
ATCGAGCACAGACGCAATGTTGCGAGTGCGTCGTCCCGCTGGCAACGACA
ACCTTCACGAGCAACGAGACGTGGGCATACCACTTTCTCCACCGCAACCA
CCAACGCCACTGTCGGTACCACAGGCGGCGGCAGCACCGCCCTCGACATC
ACCACCACCACCAGAATCTGTTAATACAGGGAGGAATGTAGGGAATGTCT
CTCGAGCGGCCGCTGAGGCTTGGACGGCAGCCGAAGCGTGGGCGTTTACG
ATAGCGTCGGCCACTACGACAGCGGCAACAACGGGGGCAACAGTTGGTAC
GGTAGCCGAGGGAGGAGCGGGTGGTCACACGAAGACAACGGCCAAAGCTG
CGGCCTTGGAGTTGGCGAAGCCTCGAGAGTTCTTTGTTATCTCGGGTGGA
GATCAAGACAACAGCCGCTGCAATTGCGAGGGCGTAAACTGTCGTCTCGT
CAACCGTCCTCTGTTGACTCCGACGGCTGTGTCACCAACCACTGCGGGAT
GTGCGGGCAATCCCGCTGCTACTGTGCACAACCACGACACTACGCATTTC
TTTGCGACAAAGGGATCTCCTGACTCAAGAGTACAGACTGTTGTCAATGT
CCGGTCAAAGCCTTCCCCCACACGCCCGCCGCCGCCGCCGCCGCCGTTAC
GCGCCCATAAGAACCCGCAAGCGAACCGGCGGAAGAGGTCATCTTTTGAG
TCCGTGGGATACTCCCGCTCCGTTATGGAAGCGGGATTTGTAGGCCAGTT
TGTACCCTTACGAGGTGCGGCGGCAGTTGTTCTGCAAAGGATCGAGCATG
GAGAGAAAGTGTGGAGAAGACATGTGCAGTGGACGGGTATGGCCATGTTG
AGAGCTCACTGCCTGTGGGTGCGCGAGCTTAGGTCGATGGAAATCGTTGC
TAGTAATCATCACAAGTGTGTGTGTTTGAAACGGGGCTTCAAAGGCTTGA
AGGCGAGGGTGGAGTGGATAAGAAGGAGGCGTAGGGCTGTGTCTACCATC
GCCGCTGCCGCTCGCGACGGGGCCGAAGGGGAGTGACGCGACGGGGCCGA
AGGGGAGTGA back to top
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