mRNA_H-paniculata_contig19814.5053.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19814.5053.1
Unique NamemRNA_H-paniculata_contig19814.5053.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19814.5053.1 vs. uniprot
Match: D7FWP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP8_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.020e-41
Identity = 73/118 (61.86%), Postives = 90/118 (76.27%), Query Frame = 1 
Query:    7 KANHSAEVGVPQMGCCFALVQCCHDRWSTRKWTSFFASINASEVLDVFVQQSLTTSYTASDCNCKTTCESLCCTVGGTLMSQKNMDGMTQTLADHDQRSGCTQKWVKTRYMRHSLVIR 360
            +ANHSAEVG+P+M C  +L+ C HDRWS RKWTS++ASI ASEVL VFVQQ+LTTSY  S C      + LCC  GGTL S+K+++G+TQTL DHD  S C  +W KTR+MRH+LVIR
Sbjct:   43 QANHSAEVGLPKMNCLASLLTCFHDRWSRRKWTSYYASIKASEVLQVFVQQTLTTSYQTSTCTFTDFLDVLCCPTGGTLKSEKDINGVTQTLGDHDPGS-CMTRWDKTRFMRHALVIR 159
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BLAST of mRNA_H-paniculata_contig19814.5053.1 vs. uniprot
Match: A0A6H5KA59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA59_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 6.360e-39
Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:    7 KANHSAEVGVPQMGCCFALVQCCHDRWSTRKWTSFFASINASEVLDVFVQQSLTTSYTASDCNCKTTCESLCCTVGGTLMSQKNMDGMTQTLADHDQRSGCTQKWVKTRYMRHSLVIR 360
            +ANHSA VG+P+M C  +L+ CCHDRWS R WT++ A+INASEVL VFV Q L+TSY  S C      E LCC  GG++ S+K++DG+TQTL DHD    C  +W KTR+MRH+LVIR
Sbjct:   95 QANHSAVVGLPKMRCLASLLTCCHDRWSRRTWTAYCATINASEVLQVFVHQELSTSYQTSTCTFNDILEFLCCPTGGSMYSEKDIDGVTQTLGDHDP-GDCMSRWDKTRFMRHALVIR 211
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BLAST of mRNA_H-paniculata_contig19814.5053.1 vs. uniprot
Match: D7FH32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH32_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.940e-17
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  130 SEVLDVFVQQSLTTSYTASDCNCKTTCESLCCTVGGTLMSQKNMDGMTQTLADHDQRSGCTQKWVKTRYMRHSLVIR 360
            ++VL VFVQQ LTTSY  S C      + LCC  GGT+ S+KN+ G+TQTL DHD    C  +W KTR+MRH+LVIR
Sbjct:  226 TQVLQVFVQQKLTTSYQTSTCTFNDILDFLCCPTGGTMYSEKNIHGVTQTLGDHDP-GDCMSRWDKTRHMRHALVIR 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19814.5053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWP8_ECTSI1.020e-4161.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA59_9PHAE6.360e-3957.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH32_ECTSI1.940e-1755.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19814contigH-paniculata_contig19814:103..2448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size363
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19814.5053.1prot_H-paniculata_contig19814.5053.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19814 103..2448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929498.2655673-CDS-H-paniculata_contig19814:102..2371622929498.2655673-CDS-H-paniculata_contig19814:102..237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19814 103..237 +
1691480887.1537478-CDS-H-paniculata_contig19814:102..2371691480887.1537478-CDS-H-paniculata_contig19814:102..237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19814 103..237 +
1622929498.278185-CDS-H-paniculata_contig19814:1790..18631622929498.278185-CDS-H-paniculata_contig19814:1790..1863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19814 1791..1863 +
1691480887.1709254-CDS-H-paniculata_contig19814:1790..18631691480887.1709254-CDS-H-paniculata_contig19814:1790..1863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19814 1791..1863 +
1622929498.2909763-CDS-H-paniculata_contig19814:2293..24481622929498.2909763-CDS-H-paniculata_contig19814:2293..2448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19814 2294..2448 +
1691480887.1796067-CDS-H-paniculata_contig19814:2293..24481691480887.1796067-CDS-H-paniculata_contig19814:2293..2448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19814 2294..2448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19814.5053.1

>prot_H-paniculata_contig19814.5053.1 ID=prot_H-paniculata_contig19814.5053.1|Name=mRNA_H-paniculata_contig19814.5053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MVKANHSAEVGVPQMGCCFALVQCCHDRWSTRKWTSFFASINASEVLDVF
VQQSLTTSYTASDCNCKTTCESLCCTVGGTLMSQKNMDGMTQTLADHDQR
SGCTQKWVKTRYMRHSLVIR*
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mRNA from alignment at H-paniculata_contig19814:103..2448+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19814.5053.1 ID=mRNA_H-paniculata_contig19814.5053.1|Name=mRNA_H-paniculata_contig19814.5053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2346bp|location=Sequence derived from alignment at H-paniculata_contig19814:103..2448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAAAGGCCAATCACTCGGCCGAGGTCGGTGTCCCACAGATGGGCTG
CTGTTTCGCGCTGGTGCAGTGCTGCCACGACCGGTGGTCAACTCGCAAGT
GGACATCATTCTTTGCCTCGATCAACGCGTCCGAGGTACGACAGCCAGCT
GCTATATGGTAACTATGATAGAGGGGGCGAGGGGGCGAGGGGAGGAGGAA
GGAGGAGGGATAGGCAAGGCGTGCATGCATGGATGTACTCGGTACAATAA
CAGAAGAAACCAGGAGAATGACTGAACCGGCTTCGCCACAGAGCTCGAGG
GGAAAGCCAAAAGAGGTTCTGATATCTGGCAAAATATATCCTTAATAAGG
GTACTAGCTATTGCTACCTCTAGGCGAGAAAACGCCAAATCAATCAAGGA
AAAGTTTGAACACTAACAAAGGAGGTTTTGTGGCGTCCTCAGCCTGCGTC
GAGCTATTGTTGTCCTGGATTATGATTATGTACGGTGTACATGCGACCTA
GACAACATACCTTAATTTCTGTAGTTGAGCCCTGCCTACAATAAACCTCT
CATCTTGCTTTGGGTTCTCCAATACCACCCGCCGGTCTTGCAAGTGAGGA
TGTTTTAAAGCGTCATAGCCATCCTCCACTATGGACGTGGGGAAGTGGAA
GCCGCGATATACGGGATTCAATCGCTTTACGTTATGCCGTCAAACGTTCG
TCAATGATTCCGAAACGCAATTCCTAACTCTACCCAAACGGCAGGGTGAC
GTCCAGTATCTCTGTCCATACCTTTTCTTTCTTTCATCCCCTGAGAGATA
CGATTTTACTCGTTTCTAAGATATATTGAGAGGGAAAGAAGCTTAAGCCC
ACAACACTTTTTACCGTGTTCTGATTCTAAACCTATACGCAGAACGCGTA
CTTGAAGGTTACTCAGTTCAGCCTTCGATTTCTATACAAACCTTGGGCCT
TAGGGGATAGCCGTCCAGGACCGCCTTCGGTCGCTGGGTTGTACGAGACT
TCGCCGTTTTTAGGTACGCCGTTTTTGGATACGGTTTTAGACTTTACCCA
TGGGTACAGAATCCTCACTCGTTAAGACCGTTTAATCTCTGTCAGGTCAT
CGGCAAAGGGTTTACCCCCTAGCCGTGTCCTACCCGATCGGGCTTAGACG
TGTCCAAACCTTTGAAGGAGTGGAAGATGACTCATGAAACCTGGCTACCA
GATCGGCGGGGGGAGGGGGGGGGGGGGGGTACATTTCTGAAGGTCGTACA
AGGACTCCATTGAACCCATGCTAACTGTATATGACTAAACTTGAGCTATA
TACTACATACACTCATGATCTAAAGTAGATCGATAAGCGCGCGGGGGAGG
GGGGGGGTGAGGCTTTACCTACTCTGGGATCAAACCCTCGCGTCTCGCGT
ATACGCGTCCTTACTTGTACAATATGCTCGTGTTCATCCAGCCGTGGAGA
TTTCACGTATATTAGAACTCCATACTATTTTCGCTATGTCTACCACCGTC
TGTTGTGGCCGTTAGGTATTGTTGTGTTCGTTTGTTTGTTCTATAATTTC
TAGTCGACATTTGCTTCTTTTGAGGTGGCGGGTGTTTCATATATAGCTGT
CAAGTACCTCGGTGTGTGTGTGTGTGTGTGTGTGTGCATGCGTGTGTGCA
TGCGTGTGTGTTTTTCAAATTGGGTCCACTTCAAGCAGGTCCTGGACGTA
TTTGTCCAGCAGAGCCTGACGACTTCCTACACCGCCAGCGACTGCAATTG
CAAGACAACATGTGAGATACAACTAGTAGTACTAGACCTATCGATGTCAT
TTTCTTTAACTTTTGTACTATTACTATTGCGTTATTTTCCTCTTCCAAGA
GAGACCTTTATTTCTTGTTTTGAGAATCTTTGCACCAACGCAGTAATGTG
CTCGCCGACAAAAAGTAAAAAAAAAATCTTTACATCCGAGCAGATAAAAG
CAGTTTTTTGTTTTCCATAATCGTGGATCGTGTTGTTCTAAACGAACCGA
AAATGTAAACGTACCTTGTGTTTACCTTACCTCAGCAAAAATGATGTAAG
CGCTTGGTTGTGCTCTCCATACACACTGTGCCGATGAGTGTTCCGTTTTG
TCTGCGTTGTTATTGAACTGGTTTCCTTTTTCCGATGCATGCAACGATGT
TCAATGTATAAGGTTCAATTACCGCGTTTTCCTTCCGGCAGGCGAATCCT
TGTGCTGCACTGTCGGAGGCACGCTCATGTCACAAAAGAACATGGACGGT
ATGACCCAGACGCTCGCAGACCATGACCAAAGATCAGGCTGCACCCAAAA
GTGGGTCAAGACACGCTACATGCGGCACTCCTTGGTCATAAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19814:103..2448+

>mRNA_H-paniculata_contig19814.5053.1 ID=mRNA_H-paniculata_contig19814.5053.1|Name=mRNA_H-paniculata_contig19814.5053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig19814:103..2448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAAAGGCCAATCACTCGGCCGAGGTCGGTGTCCCACAGATGGGCTG
CTGTTTCGCGCTGGTGCAGTGCTGCCACGACCGGTGGTCAACTCGCAAGT
GGACATCATTCTTTGCCTCGATCAACGCGTCCGAGATGGTAAAGGCCAAT
CACTCGGCCGAGGTCGGTGTCCCACAGATGGGCTGCTGTTTCGCGCTGGT
GCAGTGCTGCCACGACCGGTGGTCAACTCGCAAGTGGACATCATTCTTTG
CCTCGATCAACGCGTCCGAGGTCCTGGACGTATTTGTCCAGCAGAGCCTG
ACGACTTCCTACACCGCCAGCGACTGCAATTGCAAGACAACATGTCCTGG
ACGTATTTGTCCAGCAGAGCCTGACGACTTCCTACACCGCCAGCGACTGC
AATTGCAAGACAACATGCGAATCCTTGTGCTGCACTGTCGGAGGCACGCT
CATGTCACAAAAGAACATGGACGGTATGACCCAGACGCTCGCAGACCATG
ACCAAAGATCAGGCTGCACCCAAAAGTGGGTCAAGACACGCTACATGCGG
CACTCCTTGGTCATAAGGTAAGCGAATCCTTGTGCTGCACTGTCGGAGGC
ACGCTCATGTCACAAAAGAACATGGACGGTATGACCCAGACGCTCGCAGA
CCATGACCAAAGATCAGGCTGCACCCAAAAGTGGGTCAAGACACGCTACA
TGCGGCACTCCTTGGTCATAAGGTAA
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