mRNA_H-paniculata_contig19790.5045.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19790.5045.1
Unique NamemRNA_H-paniculata_contig19790.5045.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19790.5045.1 vs. uniprot
Match: D7FLH2_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH2_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.450e-36
Identity = 78/112 (69.64%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 ARLIKPCNGILIYGPPGCGKTLLAKAVAKQSGAAFIGVKASTLMRRPRSSGGSXXXXXGRGEXXXXXXXXXXXXGHSSVMVRALFSLAQKIQPCIIFFDEADGLCFKREEGD 336
            ARLIKPC GILIYGPPGCGKTL+A+AVAKQSGAAF+ VKASTLMR        XXXXX R              GHSSVMVRA+FSLA+K+QPCI+F DEADGLC+KREEGD
Sbjct:  421 ARLIKPCTGILIYGPPGCGKTLIARAVAKQSGAAFLSVKASTLMRTSAXXXXXXXXXXDR-RSNDSPGCGGGGVGHSSVMVRAVFSLARKVQPCIVFLDEADGLCYKREEGD 531          
BLAST of mRNA_H-paniculata_contig19790.5045.1 vs. uniprot
Match: A0A0D7A8X5_9AGAR (ATPase n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7A8X5_9AGAR)

HSP 1 Score: 92.0 bits (227), Expect = 1.080e-19
Identity = 50/112 (44.64%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    1 ARLIKPCNGILIYGPPGCGKTLLAKAVAKQSGAAFIGVKASTLMRRPRSSGGSXXXXXGRGEXXXXXXXXXXXXGHSSVMVRALFSLAQKIQPCIIFFDEADGLCFKREEGD 336
            + LI    G+L+YGPPGCGKT+LAKA+AK+SGAAFI + AS L  +                            G S+ +V  LFSLA+K+QPCIIF DE DG   +R +GD
Sbjct:  114 STLIGAPKGVLLYGPPGCGKTMLAKALAKESGAAFINISASALANK--------------------------WYGESNKLVAGLFSLARKVQPCIIFIDEIDGFLRERSKGD 199          
BLAST of mRNA_H-paniculata_contig19790.5045.1 vs. uniprot
Match: A0A137PFL0_CONC2 (Mitochondrial protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PFL0_CONC2)

HSP 1 Score: 88.2 bits (217), Expect = 2.770e-18
Identity = 49/110 (44.55%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    7 LIKPCNGILIYGPPGCGKTLLAKAVAKQSGAAFIGVKASTLMRRPRSSGGSXXXXXGRGEXXXXXXXXXXXXGHSSVMVRALFSLAQKIQPCIIFFDEADGLCFKREEGD 336
            L+ P  G+L+YGPPGCGKT+LAKA+AK+SGA FI +K STL  +                            G S+ +V  LFSLA KIQPCIIF DE D    +R   D
Sbjct:  115 LLTPPKGVLLYGPPGCGKTMLAKALAKESGATFINMKVSTLTDK--------------------------WYGESNKLVAGLFSLAYKIQPCIIFIDEIDSFLRERRSND 198          
BLAST of mRNA_H-paniculata_contig19790.5045.1 vs. uniprot
Match: G3AHY9_SPAPN (AAA domain-containing protein (Fragment) n=1 Tax=Spathaspora passalidarum (strain NRRL Y-27907 / 11-Y1) TaxID=619300 RepID=G3AHY9_SPAPN)

HSP 1 Score: 85.9 bits (211), Expect = 4.500e-18
Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    1 ARLIKPCNGILIYGPPGCGKTLLAKAVAKQSGAAFIGVKASTLMRRPRSSGGSXXXXXGRGEXXXXXXXXXXXXGHSSVMVRALFSLAQKIQPCIIFFDEADGLCFKREEGD 336
            + LI+   G+L YGPPGCGKT+LAKA+AK+SGA FI ++ ST+M +                            G S+ +V A+FSLA K+QPCIIF DE D     R   D
Sbjct:  121 SSLIQSPKGVLFYGPPGCGKTMLAKAIAKESGAFFISIRMSTIMDK--------------------------WYGESNKIVDAIFSLANKLQPCIIFIDEIDSFLRDRSSND 206          
BLAST of mRNA_H-paniculata_contig19790.5045.1 vs. uniprot
Match: A0A0C3QPK1_9AGAM (AAA domain-containing protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QPK1_9AGAM)

HSP 1 Score: 87.0 bits (214), Expect = 6.830e-18
Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    1 ARLIKPCNGILIYGPPGCGKTLLAKAVAKQSGAAFIGVKASTLMRRPRSSGGSXXXXXGRGEXXXXXXXXXXXXGHSSVMVRALFSLAQKIQPCIIFFDEADGLCFKREEGD 336
            + LI    G+L+YGPPGCGKT+LAKA+AK+SGA FI + AS +  +                            G S+ +V  LFSLA+K+QPCIIF DE D    +R  GD
Sbjct:  115 SNLISAPKGVLLYGPPGCGKTMLAKALAKESGATFINITASVIQDK--------------------------WFGESNKLVAGLFSLARKLQPCIIFIDEIDSFLRERSRGD 200          
BLAST of mRNA_H-paniculata_contig19790.5045.1 vs. uniprot
Match: A0A8D2L9T9_VARKO (AAA domain-containing protein n=1 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2L9T9_VARKO)

HSP 1 Score: 85.5 bits (210), Expect = 7.210e-18
Identity = 49/112 (43.75%), Postives = 59/112 (52.68%), Query Frame = 1
Query:    1 ARLIKPCNGILIYGPPGCGKTLLAKAVAKQSGAAFIGVKASTLMRRPRSSGGSXXXXXGRGEXXXXXXXXXXXXGHSSVMVRALFSLAQKIQPCIIFFDEADGLCFKREEGD 336
            +RL +P  G+L+YGPPGCGKTLLAKA A+ SG  FI ++ASTL  +                            G S  +  A+FSLA KIQPCIIF DE D     R E D
Sbjct:   39 SRLCQPPKGVLLYGPPGCGKTLLAKATAQASGCKFINLQASTLTDK--------------------------WYGESQKLTAAVFSLATKIQPCIIFIDEIDAFLRNRSETD 124          
BLAST of mRNA_H-paniculata_contig19790.5045.1 vs. uniprot
Match: A0A1D2VKJ2_9ASCO (ATPase family AAA domain-containing protein 1-A n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VKJ2_9ASCO)

HSP 1 Score: 87.0 bits (214), Expect = 7.760e-18
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    1 ARLIKPCNGILIYGPPGCGKTLLAKAVAKQSGAAFIGVKASTLMRRPRSSGGSXXXXXGRGEXXXXXXXXXXXXGHSSVMVRALFSLAQKIQPCIIFFDEADGLCFKREEGD 336
            + L++   G+L+YGPPGCGKT+LAKA+A +SGA F+ +K S++M +                            G S+ +V A+FSLA K+QPCIIF DE D    KRE  D
Sbjct:  125 SSLLQAPKGVLLYGPPGCGKTMLAKALANESGANFLSIKMSSIMDK--------------------------WYGESNKLVSAIFSLANKLQPCIIFIDEIDSFLRKRESND 210          
BLAST of mRNA_H-paniculata_contig19790.5045.1 vs. uniprot
Match: A0A8J5BGI5_9ASCO (Protein MSP1 n=1 Tax=Yarrowia sp. B02 TaxID=2768839 RepID=A0A8J5BGI5_9ASCO)

HSP 1 Score: 87.0 bits (214), Expect = 8.230e-18
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    1 ARLIKPCNGILIYGPPGCGKTLLAKAVAKQSGAAFIGVKASTLMRRPRSSGGSXXXXXGRGEXXXXXXXXXXXXGHSSVMVRALFSLAQKIQPCIIFFDEADGLCFKREEGD 336
            + L++P  G+L+YGPPGCGKT+LAKA+A +SGA FI +K S +M +                            G S+ +V A+FSLA K+QPCIIF DE D    +R+  D
Sbjct:  141 SSLLRPPKGVLLYGPPGCGKTMLAKALAAESGANFINIKMSNIMDK--------------------------WFGESNKLVAAIFSLAHKLQPCIIFIDEIDSFLRERQSTD 226          
BLAST of mRNA_H-paniculata_contig19790.5045.1 vs. uniprot
Match: A0A642UXB6_DIURU (AAA domain-containing protein n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UXB6_DIURU)

HSP 1 Score: 86.7 bits (213), Expect = 9.460e-18
Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    1 ARLIKPCNGILIYGPPGCGKTLLAKAVAKQSGAAFIGVKASTLMRRPRSSGGSXXXXXGRGEXXXXXXXXXXXXGHSSVMVRALFSLAQKIQPCIIFFDEADGLCFKREEGD 336
            A LI+P  G+L YGPPGCGKT+LAKA+AK+SGA F+ ++ ST+M +                            G S+ +  A+FSLA K+QPCIIF DE D     R   D
Sbjct:  128 AGLIQPPKGVLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSTIMDK--------------------------WYGESNKITDAIFSLANKLQPCIIFIDEIDSFLRDRSSQD 213          
BLAST of mRNA_H-paniculata_contig19790.5045.1 vs. uniprot
Match: G8BBX8_CANPC (AAA domain-containing protein n=3 Tax=Candida TaxID=1535326 RepID=G8BBX8_CANPC)

HSP 1 Score: 86.7 bits (213), Expect = 1.030e-17
Identity = 47/112 (41.96%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    1 ARLIKPCNGILIYGPPGCGKTLLAKAVAKQSGAAFIGVKASTLMRRPRSSGGSXXXXXGRGEXXXXXXXXXXXXGHSSVMVRALFSLAQKIQPCIIFFDEADGLCFKREEGD 336
            + LIK   G+L YGPPGCGKT+LAKA+AK+SGA F+ ++ ST+M +                            G S+ +V A+FSLA K+QPCIIF DE D     R   D
Sbjct:  127 SNLIKSPKGVLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSTVMDK--------------------------WYGESNKIVDAIFSLANKLQPCIIFIDEIDSFLRDRSSSD 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19790.5045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLH2_ECTSI1.450e-3669.64AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0D7A8X5_9AGAR1.080e-1944.64ATPase n=1 Tax=Fistulina hepatica ATCC 64428 TaxID... [more]
A0A137PFL0_CONC22.770e-1844.55Mitochondrial protein n=1 Tax=Conidiobolus coronat... [more]
G3AHY9_SPAPN4.500e-1841.96AAA domain-containing protein (Fragment) n=1 Tax=S... [more]
A0A0C3QPK1_9AGAM6.830e-1841.96AAA domain-containing protein n=1 Tax=Tulasnella c... [more]
A0A8D2L9T9_VARKO7.210e-1843.75AAA domain-containing protein n=1 Tax=Varanus komo... [more]
A0A1D2VKJ2_9ASCO7.760e-1841.07ATPase family AAA domain-containing protein 1-A n=... [more]
A0A8J5BGI5_9ASCO8.230e-1841.07Protein MSP1 n=1 Tax=Yarrowia sp. B02 TaxID=276883... [more]
A0A642UXB6_DIURU9.460e-1841.96AAA domain-containing protein n=1 Tax=Diutina rugo... [more]
G8BBX8_CANPC1.030e-1741.96AAA domain-containing protein n=3 Tax=Candida TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19790contigH-paniculata_contig19790:462..812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue2.8e-31
Seed eggNOG ortholog2880.D7FLH2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGsCOG0464@1,KOG0737@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929495.2097754-CDS-H-paniculata_contig19790:461..8121622929495.2097754-CDS-H-paniculata_contig19790:461..812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19790 462..812 +
1691480886.5914614-CDS-H-paniculata_contig19790:461..8121691480886.5914614-CDS-H-paniculata_contig19790:461..812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19790 462..812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19790.5045.1prot_H-paniculata_contig19790.5045.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19790 462..812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19790.5045.1

>prot_H-paniculata_contig19790.5045.1 ID=prot_H-paniculata_contig19790.5045.1|Name=mRNA_H-paniculata_contig19790.5045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
ARLIKPCNGILIYGPPGCGKTLLAKAVAKQSGAAFIGVKASTLMRRPRSS
GGSGGGGGGRGEGGANRGGGGRGAGHSSVMVRALFSLAQKIQPCIIFFDE
ADGLCFKREEGDCGPDR
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mRNA from alignment at H-paniculata_contig19790:462..812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19790.5045.1 ID=mRNA_H-paniculata_contig19790.5045.1|Name=mRNA_H-paniculata_contig19790.5045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig19790:462..812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCGTCTGATCAAACCCTGCAACGGGATCCTGATATACGGCCCTCCGGG CTGCGGCAAGACATTACTGGCGAAGGCAGTCGCAAAGCAAAGCGGAGCAG CGTTCATAGGCGTCAAAGCATCCACGTTAATGAGGAGACCTCGGAGCAGC GGCGGTAGCGGCGGCGGCGGCGGCGGCAGGGGGGAAGGTGGTGCTAATCG CGGCGGCGGTGGGAGGGGAGCGGGTCACTCGAGCGTCATGGTGCGCGCAC TATTCAGCCTCGCTCAAAAGATTCAGCCGTGCATTATATTTTTCGACGAG GCGGATGGGCTGTGCTTCAAGAGGGAGGAGGGTGACTGCGGGCCTGATCG G
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Coding sequence (CDS) from alignment at H-paniculata_contig19790:462..812+

>mRNA_H-paniculata_contig19790.5045.1 ID=mRNA_H-paniculata_contig19790.5045.1|Name=mRNA_H-paniculata_contig19790.5045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig19790:462..812+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCGTCTGATCAAACCCTGCAACGGGATCCTGATATACGGCCCTCCGGG
CTGCGGCAAGACATTACTGGCGAAGGCAGTCGCAAAGCAAAGCGGAGCAG
CGTTCATAGGCGTCAAAGCATCCACGTTAATGAGGAGACCTCGGAGCAGC
GGCGGTAGCGGCGGCGGCGGCGGCGGCAGGGGGGAAGGTGGTGCTAATCG
CGGCGGCGGTGGGAGGGGAGCGGGTCACTCGAGCGTCATGGTGCGCGCAC
TATTCAGCCTCGCTCAAAAGATTCAGCCGTGCATTATATTTTTCGACGAG
GCGGATGGGCTGTGCTTCAAGAGGGAGGAGGGTGACTGCGGGCCTGATCG
GGCTCGTCTGATCAAACCCTGCAACGGGATCCTGATATACGGCCCTCCGG
GCTGCGGCAAGACATTACTGGCGAAGGCAGTCGCAAAGCAAAGCGGAGCA
GCGTTCATAGGCGTCAAAGCATCCACGTTAATGAGGAGACCTCGGAGCAG
CGGCGGTAGCGGCGGCGGCGGCGGCGGCAGGGGGGAAGGTGGTGCTAATC
GCGGCGGCGGTGGGAGGGGAGCGGGTCACTCGAGCGTCATGGTGCGCGCA
CTATTCAGCCTCGCTCAAAAGATTCAGCCGTGCATTATATTTTTCGACGA
GGCGGATGGGCTGTGCTTCAAGAGGGAGGAGGGTGACTGCGGGCCTGATC
GG
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