mRNA_H-paniculata_contig1979.5042.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1979.5042.1
Unique NamemRNA_H-paniculata_contig1979.5042.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1979.5042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1979contigH-paniculata_contig1979:9154..9368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size215
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1979.5042.1prot_H-paniculata_contig1979.5042.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1979 9182..9304 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.8859808-UTR-H-paniculata_contig1979:9153..91811622929494.8859808-UTR-H-paniculata_contig1979:9153..9181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1979 9154..9181 +
1691480886.4067888-UTR-H-paniculata_contig1979:9153..91811691480886.4067888-UTR-H-paniculata_contig1979:9153..9181Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1979 9154..9181 +
1622929494.9131694-UTR-H-paniculata_contig1979:9304..93681622929494.9131694-UTR-H-paniculata_contig1979:9304..9368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1979 9305..9368 +
1691480886.4345367-UTR-H-paniculata_contig1979:9304..93681691480886.4345367-UTR-H-paniculata_contig1979:9304..9368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1979 9305..9368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.9005296-CDS-H-paniculata_contig1979:9181..93041622929494.9005296-CDS-H-paniculata_contig1979:9181..9304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 9182..9304 +
1691480886.4196005-CDS-H-paniculata_contig1979:9181..93041691480886.4196005-CDS-H-paniculata_contig1979:9181..9304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 9182..9304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1979.5042.1

>prot_H-paniculata_contig1979.5042.1 ID=prot_H-paniculata_contig1979.5042.1|Name=mRNA_H-paniculata_contig1979.5042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
MNLNNQATLYKYGMTPVFRISESGSQWFRLKQKVSFEVCA*
back to top

mRNA from alignment at H-paniculata_contig1979:9154..9368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1979.5042.1 ID=mRNA_H-paniculata_contig1979.5042.1|Name=mRNA_H-paniculata_contig1979.5042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=215bp|location=Sequence derived from alignment at H-paniculata_contig1979:9154..9368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCCCATGCGTTTTCGGTCAGAGATTGATGAACCTAAACAACCAGGCCA
CGCTGTATAAATATGGCATGACCCCCGTCTTTCGAATCTCGGAGAGTGGC
TCGCAGTGGTTCCGTTTGAAGCAAAAGGTATCCTTCGAGGTATGTGCGTA
ACGTCTTCGATTGGGTTCCATTTCTGTGGTTTACTGTGACTGTGGGTCGA
GAAACGAAGTTGCTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1979:9154..9368+

>mRNA_H-paniculata_contig1979.5042.1 ID=mRNA_H-paniculata_contig1979.5042.1|Name=mRNA_H-paniculata_contig1979.5042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig1979:9154..9368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCTAAACAACCAGGCCACGCTGTATAAATATGGCATGACCCCCGT
CTTTCGAATCTCGGAGAGTGGCTCGCAGTGGTTCCGTTTGAAGCAAAAGG
TATCCTTCGAGGTATGTGCGTAAATGAACCTAAACAACCAGGCCACGCTG
TATAAATATGGCATGACCCCCGTCTTTCGAATCTCGGAGAGTGGCTCGCA
GTGGTTCCGTTTGAAGCAAAAGGTATCCTTCGAGGTATGTGCGTAA
back to top