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Homology
BLAST of mRNA_H-paniculata_contig19714.5020.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.740e-14 Identity = 50/113 (44.25%), Postives = 58/113 (51.33%), Query Frame = 1
Query: 1 AGAYVKLSNADHSFTRGARDVTGRMDRWPVRGEPKHGFPAGMLVEIRCLDHSKGPGGR--------------------------GEL------GTTVEAQAKLRGKYRLKAEP 243
AGAYVK+ D SFTRG R ++G M+ WP GEP++GFPAGM VE RCL+HS G GR GE GTT E Q LR KYR+K P
Sbjct: 1188 AGAYVKVDVTDPSFTRGERGLSGDMEAWPAPGEPRYGFPAGMSVEARCLEHSVGAPGRKGAPAEAAAVQQLADADALPPGTISLGETAGGVVRGTTWEEQRDLRNKYRMKDRP 1300
BLAST of mRNA_H-paniculata_contig19714.5020.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 3.150e-9 Identity = 49/129 (37.98%), Postives = 61/129 (47.29%), Query Frame = 1
Query: 31 DHSFTRGARDVTGRMDRWPVRGEPKHGFPAGMLVEIRCLDHSKGPGGR--------------------------GEL------GTTVEAQAKLRGKYRLKAEPKCKKPSAKRKKPAAKTTAEPKRGEAQ 321
D SFT G R ++G M WP GE ++GFPAGM VE RCL+HS G GR GE GTT E Q LR KYR+K +P + K+KK A+ E K+ E +
Sbjct: 1000 DPSFTMGERGLSGDMGAWPAAGEARYGFPAGMSVEARCLEHSVGAPGRKGAPAEAAAVQQLADADALPPGTISLGETAGGVVRGTTCEEQRDLRNKYRIKFQPAWQVEGKKKKKTKAQLKREQKKAERE 1128
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 60.1 |
| Seed ortholog evalue | 2.4e-06 |
| Seed eggNOG ortholog | 2880.D7FV42 |
| Preferred name | PHF14 |
| KEGG ko | ko:K02606,ko:K11380,ko:K22156,ko:K22184 |
| KEGG Pathway | ko04110,ko04111,ko04113,map04110,map04111,map04113 |
| KEGG Module | M00284 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007154,GO:0007267,GO:0007275,GO:0008150,GO:0008285,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010464,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010640,GO:0010642,GO:0010646,GO:0010648,GO:0019219,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030323,GO:0030324,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035295,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045165,GO:0045168,GO:0045892,GO:0045934,GO:0046331,GO:0048286,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0060255,GO:0060541,GO:0065007,GO:0072201,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000026,GO:2000112,GO:2000113,GO:2000583,GO:2000584,GO:2000790,GO:2000791,GO:2001141 |
| EggNOG free text desc. | negative regulation of platelet-derived growth factor receptor-alpha signaling pathway |
| EggNOG OGs | COG5141@1,KOG0954@2759,KOG0955@2759,KOG0957@2759 |
| COG Functional cat. | BQ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko03032,ko03036 |
| Exons | 5 |
| Model size | 1223 |
| Cds size | 1053 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19714.5020.1 >prot_H-paniculata_contig19714.5020.1 ID=prot_H-paniculata_contig19714.5020.1|Name=mRNA_H-paniculata_contig19714.5020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=351bp
MDRWPVRGEPKHGFPAGMLVEIRCLDHSKGPGGRGELGTTVEAQAKLRGK
YRLKAEPKCKKPSAKRKKPAAKTTAEPKRGEAQVTKELEAAQVVAAAAAA
SQQSAPAATRKNNRKDGGATAVAAAAKPVAEVSRHGCPKAIGRVEQQHPP
LPPPSAGGDDNVGRNNRARRAGTIYGQGRWGVRARAGVEGKSQTLCKRRR
DGMSGADGNDGNPSCRDGGVSLPSYVSWAVTSQQRSFVQDNPSSQHPHKH
EPLWKPDRKRPRAGRADARPECRRACENVVRQCMGKGPLEGVARRVLDCG
RQDDRQRRGGVEATSSQRQPGEGAWETNFGILLTSLVGKENLETPTSARA
* back to topmRNA from alignment at H-paniculata_contig19714:2..2865+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig19714.5020.1 ID=mRNA_H-paniculata_contig19714.5020.1|Name=mRNA_H-paniculata_contig19714.5020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2864bp|location=Sequence derived from alignment at H-paniculata_contig19714:2..2865+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGGCGCGTATGTGAAGCTTAGCAACGCGGATCATTCGTTCACGAGGGG
GGCTCGAGATGTGACAGGGAGGATGGACAGGTGGCCAGTGAGGGGGGAGC
CCAAGCATGGCTTTCCTGCCGGCATGCTGGTTGAAATTCGATGTCTCGAT
CACTCGAAGGGACCCGGCGGGAGGGGTGAACTGGGAACGACCGTGGAAGC
GCAGGCTAAACTTCGCGGGAAGTACCGGCTGAAGGTTGGTGTTTTCCACG
CCGGCCCGTGTGTTCTAAACGTGTGTTGGCATATGGTGCCGGTAGTTGGT
TGGGCTGGTTGTTTGTACTGCCGAAGTGAGGTGGGTATCTCGTGTATTTT
TTGCGCGCCGGGAGCAACGAAGCTAAATAGCGTGCACGCACAGTTAGTAG
GTAGCCTATTTCTGTGTTCTTTGTCGAGGCGCTGAGCTGCTTGCTCTATA
TCTGTTGCTGTTGGCTAGTACCCTGGCAGAAACGCGAGTATCTTGATGTC
GTGTCATGATTTGTGCTTCCTCTCTTACTCCAGCTATTATCCGTTTCGTG
CCTCAAAAACAACAGGCGGAACCCAAATGTAAGAAACCAAGTGCAAAGCG
GAAGAAGCCTGCAGCCAAGACCACGGTGCGTGTATTTCTTGTTTTTTTTA
TCTGATTATCTTATGATTGCGCGACGAATGAAAGCCCCGGTTTGGCAGCG
TGCGACGAACTTCGCGGCAATCACTTCTACAGAAGGTGGCAGATATGTTT
GATGTTGAGAAGTCAATCGTGATGTTGCCACCGTGCTATGAGCAACCGTC
GTCGCCATCAATAGCGTTCGCACACATGGCATGTAAGTGAATGGATGGCT
TGTCCTATCCCAATAACGCTTTGTTCTAATTTATCGACATGACGTTTATC
CCTCTTATTGATGTAATTTGTTCAATCCCCCCCCTCCCCTTGACTCTCTT
TTTCACGTCGGTCATAATACCTTCTATTACGTTGCGCCGTGTTGCTGAAC
AGTAGGTCGTTCTTTTTTTCTTGAAAGGTTTGTCGATACTCATGATGAAC
AACATTCTCCTCTCATATTTTATTCGGAGGAGGGGGAGGCGGAGGTACTC
ATTTTTTGCCTGCTGTAGTTGTTCGATCATTAACCACCCGTCCTCGGGAA
GACAGAGCTTTGTCCTATCAGAGCGATTAATTCAAGATGAACCCCCCACG
TTCACCTGGAATATGACACTCACCCCCCGTCCTCCCAGGCTGAACCTAAA
CGTGGGGAAGCCCAAGTGACAAAGGAGCTCGAAGCGGCTCAAGTCGTCGC
TGCTGCCGCTGCCGCATCCCAACAGTCCGCGCCCGCGGCCACTCGCAAGA
ACAACCGGAAGGACGGCGGGGCCACGGCAGTGGCGGCGGCGGCGAAGCCA
GTCGCGGAGGTCTCGCGGCACGGGTGCCCCAAAGCTATTGGGCGCGTCGA
ACAGCAGCACCCTCCCCTGCCTCCGCCATCTGCGGGGGGCGACGACAACG
TGGGCAGGAATAATAGGGCGAGGAGAGCTGGGACCATCTATGGTCAGGGG
AGATGGGGGGTGCGCGCTCGCGCGGGTGTTGAGGTCTGTGCGGATTACGT
TTCGGAGCTATACCTTTAGATATTTATAGAATAACTGACCAAGTGCGTAC
AGCGTTTTGCAGGCCTTGACTATTAGACCGCTGACCTCGCATCCTCGAGA
GGTCCGAGAGCACTACGATACAGATGTTCAATAGATGACTGAGCTAACTC
CCCTCCCCCCTCTCCCAAGCTCCGTCCTCTCGAGGACGCGTGGTCAATGG
TGTACAAACTATGGCATGAAAAACATGAGTTCACCCCCTCCCAGCGAGTG
CTGCTCTGCCCCTAGCCACCTTTTCGTTTTTGTAACACACCAAAACGTCC
ATCCACGACCCGTGATAATTGACACAGGGGAAATCGCAAACATTGTGCAA
GCGCCGCCGGGACGGCATGTCAGGGGCGGATGGGAACGATGGTAACCCGA
GCTGCCGTGATGGGGGTGTCTCCCTGCCGTCGTACGTGTCCTGGGCGGTG
ACGTCCCAGCAAAGGTCATTCGTACAAGACAATCCCAGCTCGCAGCACCC
ACACAAACACGAACCGCTTTGGAAGCCCGACAGGAAGCGGCCGAGGGCCG
GGAGGGCCGACGCGCGTCCCGAGTGCCGGCGAGCGTGTGAAAATGTCGTT
CGGCAGTGCATGGGTAAGGGCCCGCTGGAGGGGGTGGCTCGGCGGGTGCT
CGATTGTGGGCGTCAGGACGATCGACAGAGGAGGGGCGGAGTGGAAGCGA
CTAGTTCGCAGCGGCAACCCGGGGAAGGTGGGGGTGCGTTTTGTTTTTGT
TTTTTTCAATTCTGGCACTGGTGTCTGTGTCTGTTAGGTGTTTTTGTTGC
TTGGTCGGTGCATCAGTAGTCCGGAGAGACCACGCCATGCCTGTTTCTGC
ACTATTTTGCGTGGTTTTATGTAGGCCACACCTGAAACCCTTGCGCTGTA
GCTGTTTTTACCTACATTCGGCGGGAAAGGCGTGTTTTCTCCTCCCTTAA
TCCTCCGCCCTTCTCCTTGCCTCCATTATGTATTTACACGTTTCAATATT
AGTTTGTTTTTTTGTGTGTTTTTTACAAGAGACGTTTGAACAGTAATGTG
ATTTTTAATTGAAAAACAACACAAACATAGGTGCATGGGAGACCAACTTC
GGCATTCTGTTGACGAGCCTAGTGGGAAAGGAGAACCTCGAGACCCCGAC
GAGTGCGCGGGCCTAGTACCAGCGAGATACGCCACCAACGGCACCGGCAC
CCGCGCCTCTGCAAGACCGTATTCTGCTCGACCGTCAGCTTCGGGAACTT
GTTGACACCCTCAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig19714:2..2865+ >mRNA_H-paniculata_contig19714.5020.1 ID=mRNA_H-paniculata_contig19714.5020.1|Name=mRNA_H-paniculata_contig19714.5020.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2106bp|location=Sequence derived from alignment at H-paniculata_contig19714:2..2865+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAGGTGGCCAGTGAGGGGGGAGCCCAAGCATGGCTTTCCTGCCGG
CATGCTGGTTGAAATTCGATGTCTCGATCACTCGAAGGGACCCGGCGGGA
GGGGTGAACTGGGAACGACCGTGGAAGCGCAGGCTAAACTTCGCGGGAAG
TACCGGCTGAAGATGGACAGGTGGCCAGTGAGGGGGGAGCCCAAGCATGG
CTTTCCTGCCGGCATGCTGGTTGAAATTCGATGTCTCGATCACTCGAAGG
GACCCGGCGGGAGGGGTGAACTGGGAACGACCGTGGAAGCGCAGGCTAAA
CTTCGCGGGAAGTACCGGCTGAAGGCGGAACCCAAATGTAAGAAACCAAG
TGCAAAGCGGAAGAAGCCTGCAGCCAAGACCACGGCGGAACCCAAATGTA
AGAAACCAAGTGCAAAGCGGAAGAAGCCTGCAGCCAAGACCACGGCTGAA
CCTAAACGTGGGGAAGCCCAAGTGACAAAGGAGCTCGAAGCGGCTCAAGT
CGTCGCTGCTGCCGCTGCCGCATCCCAACAGTCCGCGCCCGCGGCCACTC
GCAAGAACAACCGGAAGGACGGCGGGGCCACGGCAGTGGCGGCGGCGGCG
AAGCCAGTCGCGGAGGTCTCGCGGCACGGGTGCCCCAAAGCTATTGGGCG
CGTCGAACAGCAGCACCCTCCCCTGCCTCCGCCATCTGCGGGGGGCGACG
ACAACGTGGGCAGGAATAATAGGGCGAGGAGAGCTGGGACCATCTATGGT
CAGGGGAGATGGGGGGTGCGCGCTCGCGCGGGTGTTGAGGCTGAACCTAA
ACGTGGGGAAGCCCAAGTGACAAAGGAGCTCGAAGCGGCTCAAGTCGTCG
CTGCTGCCGCTGCCGCATCCCAACAGTCCGCGCCCGCGGCCACTCGCAAG
AACAACCGGAAGGACGGCGGGGCCACGGCAGTGGCGGCGGCGGCGAAGCC
AGTCGCGGAGGTCTCGCGGCACGGGTGCCCCAAAGCTATTGGGCGCGTCG
AACAGCAGCACCCTCCCCTGCCTCCGCCATCTGCGGGGGGCGACGACAAC
GTGGGCAGGAATAATAGGGCGAGGAGAGCTGGGACCATCTATGGTCAGGG
GAGATGGGGGGTGCGCGCTCGCGCGGGTGTTGAGGGGAAATCGCAAACAT
TGTGCAAGCGCCGCCGGGACGGCATGTCAGGGGCGGATGGGAACGATGGT
AACCCGAGCTGCCGTGATGGGGGTGTCTCCCTGCCGTCGTACGTGTCCTG
GGCGGTGACGTCCCAGCAAAGGTCATTCGTACAAGACAATCCCAGCTCGC
AGCACCCACACAAACACGAACCGCTTTGGAAGCCCGACAGGAAGCGGCCG
AGGGCCGGGAGGGCCGACGCGCGTCCCGAGTGCCGGCGAGCGTGTGAAAA
TGTCGTTCGGCAGTGCATGGGTAAGGGCCCGCTGGAGGGGGTGGCTCGGC
GGGTGCTCGATTGTGGGCGTCAGGACGATCGACAGAGGAGGGGCGGAGTG
GAAGCGACTAGTTCGCAGCGGCAACCCGGGGAAGGGGAAATCGCAAACAT
TGTGCAAGCGCCGCCGGGACGGCATGTCAGGGGCGGATGGGAACGATGGT
AACCCGAGCTGCCGTGATGGGGGTGTCTCCCTGCCGTCGTACGTGTCCTG
GGCGGTGACGTCCCAGCAAAGGTCATTCGTACAAGACAATCCCAGCTCGC
AGCACCCACACAAACACGAACCGCTTTGGAAGCCCGACAGGAAGCGGCCG
AGGGCCGGGAGGGCCGACGCGCGTCCCGAGTGCCGGCGAGCGTGTGAAAA
TGTCGTTCGGCAGTGCATGGGTAAGGGCCCGCTGGAGGGGGTGGCTCGGC
GGGTGCTCGATTGTGGGCGTCAGGACGATCGACAGAGGAGGGGCGGAGTG
GAAGCGACTAGTTCGCAGCGGCAACCCGGGGAAGGTGCATGGGAGACCAA
CTTCGGCATTCTGTTGACGAGCCTAGTGGGAAAGGAGAACCTCGAGACCC
CGACGAGTGCGCGGGCCTAGGTGCATGGGAGACCAACTTCGGCATTCTGT
TGACGAGCCTAGTGGGAAAGGAGAACCTCGAGACCCCGACGAGTGCGCGG
GCCTAG back to top
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