mRNA_H-paniculata_contig19713.5019.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19713.5019.1
Unique NamemRNA_H-paniculata_contig19713.5019.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19713.5019.1 vs. uniprot
Match: D7G111_ECTSI (Glycine/D-amino acid oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G111_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.090e-43
Identity = 80/100 (80.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:    1 RPSLLVDRARRRLEENGGVVMEFTSIEGVSVRPDGVALSVSPFSPPGTLPKEGEEAAGGPALVTARLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 300
            +PSLLVDRARRR E  GGVVMEFTSI+GVSVRPDGVALS SP SPPG  P     A G    VT+RLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR
Sbjct:  161 KPSLLVDRARRRFEAKGGVVMEFTSIDGVSVRPDGVALSTSPSSPPGGKPPASGAATGEE--VTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 258
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BLAST of mRNA_H-paniculata_contig19713.5019.1 vs. uniprot
Match: A0A6H5L433_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L433_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 8.070e-42
Identity = 80/100 (80.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:    1 RPSLLVDRARRRLEENGGVVMEFTSIEGVSVRPDGVALSVSPFSPPGTLPKEGEEAAGGPALVTARLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 300
            +PSLLVDRARRR E  GGVVMEFTSI+GVSVRPDGVALS SP SPPG+ P      AG    VT+RLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR
Sbjct:  259 KPSLLVDRARRRFETKGGVVMEFTSIDGVSVRPDGVALSTSPSSPPGSKPPA--SGAGTGEEVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 356
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BLAST of mRNA_H-paniculata_contig19713.5019.1 vs. uniprot
Match: A0A836CJX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.070e-29
Identity = 60/102 (58.82%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 RPSLLVDRARRRLEENGGVVMEFTSIEGVSVRPDG--VALSVSPFSPPGTLPKEGEEAAGGPALVTARLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 300
            +PS++V RAR R E  GGVVME  +I GVSVRP+G  VA++  P   P T            + VTARLVLDCMGN SPMVRQIRWG+KP+G+CLVVG CAR
Sbjct:   28 KPSVMVQRARARFEAAGGVVMEQAAISGVSVRPNGASVAVATGPADKPVT------------SNVTARLVLDCMGNGSPMVRQIRWGRKPDGMCLVVGCCAR 117
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BLAST of mRNA_H-paniculata_contig19713.5019.1 vs. uniprot
Match: A0A7S0KT21_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KT21_MICPS)

HSP 1 Score: 112 bits (280), Expect = 9.120e-27
Identity = 56/100 (56.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 RPSLLVDRARRRLEENGGVVMEFTSIEGVSVRPDGVALSVSPFSPPGTLPKEGEEAAGGPALVTARLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 300
            +PSLL+D  R   E  GGVV+E T+I G+SVRPDG  L  SP            +   GP  +TARLV+DCMG ASP+VRQ RWG+KP+GVCLVVG+CAR
Sbjct:  231 KPSLLLDAIRGNFEAKGGVVLEKTAISGISVRPDGAELDTSPL-----------DGGDGPGGITARLVVDCMGFASPIVRQARWGQKPDGVCLVVGACAR 319
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BLAST of mRNA_H-paniculata_contig19713.5019.1 vs. uniprot
Match: A0A8J9RAY4_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RAY4_9CHLO)

HSP 1 Score: 100 bits (248), Expect = 1.950e-22
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 RPSLLVDRARRRLEENGGVVMEFTSIEGVSVRPDGVALSVSPFSPPGTLPKEG--EEAAGGPALVTARLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 300
            RP  L+ + ++R E  GG V+E T  EGV+V P+G+ L +            G  +E+A G A +T RL++DCMGN SP+VRQ RWG++P+GVCLVVG+C+R
Sbjct:  215 RPDKLIAKVKQRFEAAGGTVLELTGAEGVAVHPNGIFLDIPTNDKVQAQASNGSQQESAAGGAGITGRLLIDCMGNFSPIVRQARWGQRPDGVCLVVGTCSR 316
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BLAST of mRNA_H-paniculata_contig19713.5019.1 vs. uniprot
Match: A0A383W046_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W046_TETOB)

HSP 1 Score: 97.4 bits (241), Expect = 1.730e-21
Identity = 55/111 (49.55%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:    1 RPSLLVDRARRRLEENGGVVMEFTSIEGVSVRPDGVALSVSPFSPPGTLPKEGEEAAGGPAL-----------VTARLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 300
            +P +LV   R++LE  GG V E   + GV V  DGV+L V+  + PG     G  AA G A            +T RL+LDCMG+ASP+VRQ+RWGKKP+GVCLVVG CAR
Sbjct:  175 KPDMLVSLMRQKLEAAGGKVYEEVQLGGVEVLSDGVSLVVTSQTVPG-----GAAAAAGDAQSSGTRVQYASSITTRLLLDCMGHASPVVRQLRWGKKPDGVCLVVGGCAR 280
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BLAST of mRNA_H-paniculata_contig19713.5019.1 vs. uniprot
Match: A0A836C4K2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C4K2_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 1.760e-21
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    1 RPSLLVDRARRRLEENGGVVMEFTSIEGVSVRPDGVALSVSPFSPPGTLPKEGEEAAGGPALVTARLVLDCMGNASPMVRQIRWGKKPEGVCLVVGS 291
            RP+ LV+R R +LE  GG V E T+IEGV+V P+G +LS         L  +G EAA     +TARLV+DCMG+ SP+VRQIRWG+KP+GVCLVVG 
Sbjct:  267 RPAALVERMRLKLESYGGSVYERTAIEGVTVTPNGASLS---------LRADGAEAASP---LTARLVVDCMGHFSPIVRQIRWGQKPDGVCLVVGG 351
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BLAST of mRNA_H-paniculata_contig19713.5019.1 vs. uniprot
Match: A0A2P6V886_9CHLO (Fad dependent oxidoreductase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V886_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 2.290e-21
Identity = 52/99 (52.53%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    4 PSLLVDRARRRLEENGGVVMEFTSIEGVSVRPDGVALSVSPFSPPGTLPKEGEEAAGGPALVTARLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR 300
            P+ L++ ARRR E  GG V+E T ++GV V  DGV L +                 G   L TARL+LDCMG+ASP+V+QIRWG+KP+GVCLVVGSCAR
Sbjct:  157 PARLIEAARRRFEAAGGQVLERTGLQGVWVHRDGVCLQLDGGGAXXXXXXXXXXXXGQQQL-TARLLLDCMGHASPIVQQIRWGRKPDGVCLVVGSCAR 254
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BLAST of mRNA_H-paniculata_contig19713.5019.1 vs. uniprot
Match: A8HX01_CHLRE (Glycine/D-amino acid oxidase-like protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HX01_CHLRE)

HSP 1 Score: 95.1 bits (235), Expect = 1.030e-20
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 RPSLLVDRARRRLEENGGVVMEFTSIEGVSVRPDGVALSVSPFSPPGTLPKEGEEAAGGPALVTARLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSC 294
            RP  LV   R +LE  GG V+E  ++ G+SV P+G +L V   S        G  A    A +TARLV+DCMG+ SP+VRQ+RWG KP+GVCLVVG+C
Sbjct:  143 RPDALVQLMRAKLEAAGGAVIEQAALAGISVHPNGCSLDVKTDS--------GAGAGAAAARLTARLVVDCMGHFSPIVRQVRWGTKPDGVCLVVGTC 232
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BLAST of mRNA_H-paniculata_contig19713.5019.1 vs. uniprot
Match: A0A835T427_CHLIN (Uncharacterized protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A835T427_CHLIN)

HSP 1 Score: 94.7 bits (234), Expect = 1.560e-20
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 RPSLLVDRARRRLEENGGVVMEFTSIEGVSVRPDGVALSVSPFSPPGTLPKEGEEAAG----GPALVTARLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSC 294
            RP  LV   R +LE  GG V+E  ++ G+SV P+G +L V P         +G   AG    G   +TARLV+DCMG+ SP+VRQ+RWG KP+GVCLVVG+C
Sbjct:  266 RPDALVQLMRAKLEAAGGAVIERAALAGISVHPNGCSLDVKP---------DGGAGAGXXXVGAGPLTARLVVDCMGHFSPIVRQVRWGTKPDGVCLVVGTC 358
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19713.5019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G111_ECTSI1.090e-4380.00Glycine/D-amino acid oxidase-like protein n=1 Tax=... [more]
A0A6H5L433_9PHAE8.070e-4280.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJX3_9STRA6.070e-2958.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0KT21_MICPS9.120e-2756.00Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A8J9RAY4_9CHLO1.950e-2247.06Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A383W046_TETOB1.730e-2149.55Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A836C4K2_9CHLO1.760e-2155.67Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A2P6V886_9CHLO2.290e-2152.53Fad dependent oxidoreductase n=1 Tax=Micractinium ... [more]
A8HX01_CHLRE1.030e-2050.00Glycine/D-amino acid oxidase-like protein (Fragmen... [more]
A0A835T427_CHLIN1.560e-2049.02Uncharacterized protein n=3 Tax=Chlamydomonas TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19713contigH-paniculata_contig19713:246..2424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue9.4e-36
Seed eggNOG ortholog2880.D7G111
Hectar predicted targeting categoryother localisation
EggNOG OGs28PI8@1,2QW6A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929491.8573647-CDS-H-paniculata_contig19713:245..3621622929491.8573647-CDS-H-paniculata_contig19713:245..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19713 246..362 -
1691480885.0011287-CDS-H-paniculata_contig19713:245..3621691480885.0011287-CDS-H-paniculata_contig19713:245..362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19713 246..362 -
1622929491.8662724-CDS-H-paniculata_contig19713:2238..24241622929491.8662724-CDS-H-paniculata_contig19713:2238..2424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19713 2239..2424 -
1691480885.0101366-CDS-H-paniculata_contig19713:2238..24241691480885.0101366-CDS-H-paniculata_contig19713:2238..2424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19713 2239..2424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19713.5019.1prot_H-paniculata_contig19713.5019.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19713 246..2424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19713.5019.1

>prot_H-paniculata_contig19713.5019.1 ID=prot_H-paniculata_contig19713.5019.1|Name=mRNA_H-paniculata_contig19713.5019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
RPSLLVDRARRRLEENGGVVMEFTSIEGVSVRPDGVALSVSPFSPPGTLP
KEGEEAAGGPALVTARLVLDCMGNASPMVRQIRWGKKPEGVCLVVGSCAR
*
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mRNA from alignment at H-paniculata_contig19713:246..2424-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19713.5019.1 ID=mRNA_H-paniculata_contig19713.5019.1|Name=mRNA_H-paniculata_contig19713.5019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2179bp|location=Sequence derived from alignment at H-paniculata_contig19713:246..2424- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCGTCGCTGCTAGTGGATCGCGCTCGGCGGCGGCTCGAGGAGAACGG
TGGCGTGGTGATGGAGTTCACCTCGATCGAAGGCGTTAGCGTGCGACCCG
ACGGGGTTGCGTTGTCCGTGTCCCCGTTTTCGCCTCCGGGAACATTGCCG
AAGGAGGGGGAGGAGGCTGCCGGGGGACCCGCACTTGTGAGTGCTGCTTC
AGTCTTAACCCTTTGACTTGTCGTGGAAATATAAAAAGGATTACAAAAGG
ATCGTTTTTCTCCTTCCAGGAAGCCAATCCAACCCCAAATCGTCGGTTAC
TATGTTTTAAAGAAATCAAACTAACACCATTCGGTTTAACGTCTGATTAA
CAGGATTATTATCAGAATTGCCAGTTAATCTTCAAGTTTTGTCTGTCCGG
ATCCGAATATATATATATATATATATATATAAGTAGTAAACAATAAGGAA
AATCATAAGAAAAAGAGAAATTGAGTTTGTTGTGGGCCTCTTTTTTTTCT
TTTTTTTTTAACTGTATGTGACATACCGTACCGTGTTTGAGTCGTTCGTG
AATATGGTGATGACCATAATGTAATATATATATATATATATATATATATT
GACGGTGCAGAGTACATTGTAATCAGTGAAGTGTGAGATACAATTCAAGT
GCTGTAATGACAATTAGTGAAGTTACACCGATCGATGTGGTCGAATACTA
GTAATTTTATGGAAGCATCGGTAAAGGTTTTTGCCTCAGGATTCCGGGGG
TTAACCCCCCCCAAAAAAAACTAGTAATTTGAGCACAAAGTTATATGTGT
ATGTTACACAGAGGGGTAGTGTACCAACACAGTGGTGAAGATTATTGTAA
TGGTGAGGACAAGTTACCACTATATATGTAGGTGACGTTTGGTGACTGGG
TTATCACCCGTGTTGTGATGTTGATACGACTGCTTTGTCTGTGGGTATCA
TTACTGTTGTTTCAAGCTTTAGCTGTGTTTGATCGCGAAATGTTGCATCA
TCATCCTTGTCATCGTCATGACCGTCGTCGTCCATTTGTCGTCGAGATCA
ACCGTGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGGGTT
TGGTTGTGTTGGTTGTGTGTGTTTCTTCGTTTGATTTTACAAGATGTGCG
AGTGATCGCGTCCCTGAAAGTCCCGTAAAATTTAGAAGATTCCGAAATGT
GTCGGGGTCGTCAAAAGCATCTTGTGATAAAATACCGCACAATGTTCGAC
GTGTGCTCTCACTTGACTTTTTTGTATGGTCATTTTCCAATCAAAACATG
TTATGTTTTGTTTCTGATTGTTGTGTTATTTTTCATGGTCACCGGCGGCG
GGGCGATGGCGTGAGGGAGGGAGGATCGGGGGGGAAATAGCATGGTAACG
CTAGTGCTAGTATCAATGTTAATGTGACTCTAGTAGAAGATAGGAAGGCG
TTGGTGGTTTGTCCATTTTCTGCGGGATATACTGAGGGTATACGCTGACT
TGTGCTTCAACGTCGTGTACAATGTAGCCATCAGATAGTCATGAGACAGG
AACTGCATGTAACAATCGTTTTATCTTGGTAAAGATATCACCTGTGTGCT
TGTGGAGACCGGGGCCCGAAAGTCACGGCCGCGCTAACTTGTGTAGTCGG
AGATTTATTCTCGACCCACCTGCAACGACTCACTGCGCTCGCACAAAAAT
ATTCGTATTTCAGAAGTTACTTGGTTACAGAATTTGAAAATTGTTCTGGA
ATGACGACGACCTTACGGCGGTAGCAATTTGTATTTTCATATATTTTTTT
GTTTCTTAGATTGAACGAGCAAAATTAGACAAATCCGTATTCACTATTCG
CATTATTATTCATGTATTTGCATTCATCAAGCAGGGGAGGGAGGCCTGCT
GCCTCAAGTTTGTTATGGACAATTACAACACCCACATAACATGGCATTGT
AGTGTGCGGTCCAACACATTTATTGATTCAGCGTTTTTTTTTTTTTTTTC
CATTCATTTTCTCCCTCTAATTAACTCCATCGTGTCCGACTTTGTTTGGC
ATACCTCTTCAGGTTACGGCGCGTCTAGTGCTTGATTGCATGGGAAACGC
ATCGCCGATGGTTCGCCAAATACGCTGGGGTAAGAAGCCGGAGGGTGTGT
GCTTGGTCGTCGGATCTTGTGCCCGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19713:246..2424-

>mRNA_H-paniculata_contig19713.5019.1 ID=mRNA_H-paniculata_contig19713.5019.1|Name=mRNA_H-paniculata_contig19713.5019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig19713:246..2424- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCGTCGCTGCTAGTGGATCGCGCTCGGCGGCGGCTCGAGGAGAACGG
TGGCGTGGTGATGGAGTTCACCTCGATCGAAGGCGTTAGCGTGCGACCCG
ACGGGGTTGCGTTGTCCGTGTCCCCGTTTTCGCCTCCGGGAACATTGCCG
AAGGAGGGGGAGGAGGCTGCCGGGGGACCCGCACTTAGGCCGTCGCTGCT
AGTGGATCGCGCTCGGCGGCGGCTCGAGGAGAACGGTGGCGTGGTGATGG
AGTTCACCTCGATCGAAGGCGTTAGCGTGCGACCCGACGGGGTTGCGTTG
TCCGTGTCCCCGTTTTCGCCTCCGGGAACATTGCCGAAGGAGGGGGAGGA
GGCTGCCGGGGGACCCGCACTTGTTACGGCGCGTCTAGTGCTTGATTGCA
TGGGAAACGCATCGCCGATGGTTCGCCAAATACGCTGGGGTAAGAAGCCG
GAGGGTGTGTGCTTGGTCGTCGGATCTTGTGCCCGGTGAGTTACGGCGCG
TCTAGTGCTTGATTGCATGGGAAACGCATCGCCGATGGTTCGCCAAATAC
GCTGGGGTAAGAAGCCGGAGGGTGTGTGCTTGGTCGTCGGATCTTGTGCC
CGGTGA
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