mRNA_H-paniculata_contig19709.5017.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19709.5017.1
Unique NamemRNA_H-paniculata_contig19709.5017.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19709.5017.1 vs. uniprot
Match: D8LM08_ECTSI (SPX domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM08_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 9.910e-11
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    4 FFKAYTELTALRTFCEMNSEGFRKIVKKYDKTMGTD 111
            FF+AY+E+TAL  F EMN EGFRKIVKKYDKTMGTD
Sbjct:  202 FFEAYSEITALGAFSEMNGEGFRKIVKKYDKTMGTD 237
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BLAST of mRNA_H-paniculata_contig19709.5017.1 vs. uniprot
Match: A0A2A9NFH1_9AGAR (SPX domain-containing protein n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NFH1_9AGAR)

HSP 1 Score: 46.6 bits (109), Expect = 9.480e-5
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 RFFKAYTELTALRTFCEMNSEGFRKIVKKYDKTMGTD 111
            R  K Y  LT LR++ E+N  GFRKI+KKYDK +G++
Sbjct:  333 RITKVYIALTNLRSYVELNYSGFRKIIKKYDKVVGSE 369
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19709.5017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM08_ECTSI9.910e-1180.56SPX domain-containing protein (Fragment) n=2 Tax=E... [more]
A0A2A9NFH1_9AGAR9.480e-554.05SPX domain-containing protein n=1 Tax=Amanita thie... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19709contigH-paniculata_contig19709:3953..4063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog2880.D8LM08
Preferred namePHO91
KEGG rclassRC00210,RC00700,RC02868
KEGG koko:K01694,ko:K14430,ko:K20183
KEGG TC2.A.47.2
KEGG ReactionR02722
KEGG Pathwayko00260,ko00400,ko01100,ko01110,ko01130,ko01230,ko04138,map00260,map00400,map01100,map01110,map01130,map01230,map04138
KEGG ModuleM00023
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006082,GO:0006793,GO:0006797,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009987,GO:0010966,GO:0015075,GO:0015169,GO:0015291,GO:0015318,GO:0015605,GO:0015698,GO:0015711,GO:0015748,GO:0015794,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0032879,GO:0034220,GO:0034762,GO:0034765,GO:0035435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043436,GO:0044070,GO:0044232,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0071702,GO:0071704,GO:0071944,GO:0097080,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901264,GO:1901505,GO:1903795,GO:1903959,GO:1990816,GO:2000185
EggNOG free text desc.succinate transmembrane transporter activity
EggNOG OGsCOG0471@1,KOG1281@2759
EC4.2.1.20
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko04131
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929491.5824678-CDS-H-paniculata_contig19709:3952..40631622929491.5824678-CDS-H-paniculata_contig19709:3952..4063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19709 3953..4063 +
1691480884.8511195-CDS-H-paniculata_contig19709:3952..40631691480884.8511195-CDS-H-paniculata_contig19709:3952..4063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19709 3953..4063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19709.5017.1prot_H-paniculata_contig19709.5017.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19709 3953..4063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19709.5017.1

>prot_H-paniculata_contig19709.5017.1 ID=prot_H-paniculata_contig19709.5017.1|Name=mRNA_H-paniculata_contig19709.5017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
RFFKAYTELTALRTFCEMNSEGFRKIVKKYDKTMGTD
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mRNA from alignment at H-paniculata_contig19709:3953..4063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19709.5017.1 ID=mRNA_H-paniculata_contig19709.5017.1|Name=mRNA_H-paniculata_contig19709.5017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at H-paniculata_contig19709:3953..4063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTTCTTCAAGGCGTACACCGAGCTCACGGCGCTGCGCACTTTCTGCGA
AATGAATAGCGAAGGTTTTCGCAAGATCGTGAAGAAGTACGACAAGACTA
TGGGCACCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig19709:3953..4063+

>mRNA_H-paniculata_contig19709.5017.1 ID=mRNA_H-paniculata_contig19709.5017.1|Name=mRNA_H-paniculata_contig19709.5017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig19709:3953..4063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTTCTTCAAGGCGTACACCGAGCTCACGGCGCTGCGCACTTTCTGCGA
AATGAATAGCGAAGGTTTTCGCAAGATCGTGAAGAAGTACGACAAGACTA
TGGGCACCGATCGCTTCTTCAAGGCGTACACCGAGCTCACGGCGCTGCGC
ACTTTCTGCGAAATGAATAGCGAAGGTTTTCGCAAGATCGTGAAGAAGTA
CGACAAGACTATGGGCACCGAT
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