mRNA_H-paniculata_contig19671.5004.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19671.5004.1
Unique NamemRNA_H-paniculata_contig19671.5004.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19671.5004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19671contigH-paniculata_contig19671:3583..4727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size697
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19671.5004.1prot_H-paniculata_contig19671.5004.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19671 3875..4688 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929489.7817466-UTR-H-paniculata_contig19671:3582..38741622929489.7817466-UTR-H-paniculata_contig19671:3582..3874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19671 3583..3874 -
1691480884.0106757-UTR-H-paniculata_contig19671:3582..38741691480884.0106757-UTR-H-paniculata_contig19671:3582..3874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19671 3583..3874 -
1622929489.8381455-UTR-H-paniculata_contig19671:4688..47271622929489.8381455-UTR-H-paniculata_contig19671:4688..4727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19671 4689..4727 -
1691480884.0410793-UTR-H-paniculata_contig19671:4688..47271691480884.0410793-UTR-H-paniculata_contig19671:4688..4727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19671 4689..4727 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929489.8006258-CDS-H-paniculata_contig19671:3874..40731622929489.8006258-CDS-H-paniculata_contig19671:3874..4073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19671 3875..4073 -
1691480884.022334-CDS-H-paniculata_contig19671:3874..40731691480884.022334-CDS-H-paniculata_contig19671:3874..4073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19671 3875..4073 -
1622929489.8165932-CDS-H-paniculata_contig19671:4521..46881622929489.8165932-CDS-H-paniculata_contig19671:4521..4688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19671 4522..4688 -
1691480884.0315437-CDS-H-paniculata_contig19671:4521..46881691480884.0315437-CDS-H-paniculata_contig19671:4521..4688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19671 4522..4688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19671.5004.1

>prot_H-paniculata_contig19671.5004.1 ID=prot_H-paniculata_contig19671.5004.1|Name=mRNA_H-paniculata_contig19671.5004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MRGDGEGSSQQARDVPYWRRWFSSRTRVERRETRVPDSPRSSSAGTAKDK
AGSLPRRRRAVRAEARTAFMRFWAQCQLPSYRQSHEAQFPFQRYPSLPTQ
RSDAWIRPRTYNSTPLLRRGV*
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mRNA from alignment at H-paniculata_contig19671:3583..4727-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19671.5004.1 ID=mRNA_H-paniculata_contig19671.5004.1|Name=mRNA_H-paniculata_contig19671.5004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1145bp|location=Sequence derived from alignment at H-paniculata_contig19671:3583..4727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGGAGAACCGGGGCCGACGGCGAGGGAGTGGAGAGAATGAGGGGCGA
CGGCGAGGGTTCGAGTCAACAGGCAAGAGATGTGCCGTACTGGAGGCGAT
GGTTTTCGTCTCGCACGAGGGTGGAGAGAAGAGAGACGCGAGTGCCAGAT
TCACCTAGGTCTTCTTCGGCCGGCACGGCCAAGGATAAGGCTGGGAGCCT
GCCAAGGTTTGGACCATCAGTTTCGGGACGAACGAATTTTCTGCACAACG
TAGGAGTTTGGGAATTTGAGGAAAGAAGACCGACAAATTAGGGTGCTTGA
AAGTCTGCCGTTGTTCTCTTGCTTAGTTCTATTCACCGCACGCACCTGCG
TAAAAAATCTGGAACACTTACATAGCGCTCTATCTTTTTGTATATGTATT
TATATATATATATATATGTCTGTTTATATGTTGATATCCGCCTGTTCGAT
GCAAAGAAAGAAGATACGACGCCGTATTGCCGATGATTCACACTTTCTGG
ATCAACTCGAGTAAATTCGTGTCGGTGGCAGGTGCGCGCTTAATAGACAC
ATTACATTCACTACCATGAATAAACACAGACACAGTAGGGCAAGCATGTT
AGCTTACTTCGTGAATTCCATATCCTTTATTTGTTCGCTGCTGACAATCC
TCAGGCGCCGCAGGGCCGTGAGAGCCGAAGCACGGACTGCATTTATGCGG
TTCTGGGCACAGTGCCAGTTGCCGTCATACCGCCAGAGTCACGAGGCGCA
GTTTCCCTTCCAGAGATATCCTTCCCTTCCGACACAGCGTAGCGACGCAT
GGATAAGGCCACGTACGTACAATTCGACGCCTCTCCTGCGCAGGGGTGTT
TGAAGCTTAACGCGAGGGTTTGGTCAACTGCCCCACTTGGCTCGGGAACT
GATCGCACACACCACCAGAAAGGTGTTTGACGCGGTGGGCGTTGCCGGTT
GATGTATTGTGTTGCCCAGTAGCAGGGCTATGCTTGGGTGGTGAGATTGG
CATGTTTGGGTTAATGAGAAAGACCATTTGATTTGCTGCTGACAAGAGGT
TTGTGCTACTGAATGTGATTGAGTTTCGTTTGTTTGCTCCATAAAAGAGA
CTTTAGCTTGGAACAGGAGGAATTGTGAGCTGCTGTAGCTCCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19671:3583..4727-

>mRNA_H-paniculata_contig19671.5004.1 ID=mRNA_H-paniculata_contig19671.5004.1|Name=mRNA_H-paniculata_contig19671.5004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig19671:3583..4727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGGCGACGGCGAGGGTTCGAGTCAACAGGCAAGAGATGTGCCGTA
CTGGAGGCGATGGTTTTCGTCTCGCACGAGGGTGGAGAGAAGAGAGACGC
GAGTGCCAGATTCACCTAGGTCTTCTTCGGCCGGCACGGCCAAGGATAAG
GCTGGGAGCCTGCCAAGATGAGGGGCGACGGCGAGGGTTCGAGTCAACAG
GCAAGAGATGTGCCGTACTGGAGGCGATGGTTTTCGTCTCGCACGAGGGT
GGAGAGAAGAGAGACGCGAGTGCCAGATTCACCTAGGTCTTCTTCGGCCG
GCACGGCCAAGGATAAGGCTGGGAGCCTGCCAAGGCGCCGCAGGGCCGTG
AGAGCCGAAGCACGGACTGCATTTATGCGGTTCTGGGCACAGTGCCAGTT
GCCGTCATACCGCCAGAGTCACGAGGCGCAGTTTCCCTTCCAGAGATATC
CTTCCCTTCCGACACAGCGTAGCGACGCATGGATAAGGCCACGTACGTAC
AATTCGACGCCTCTCCTGCGCAGGGGTGTTTGAGCGCCGCAGGGCCGTGA
GAGCCGAAGCACGGACTGCATTTATGCGGTTCTGGGCACAGTGCCAGTTG
CCGTCATACCGCCAGAGTCACGAGGCGCAGTTTCCCTTCCAGAGATATCC
TTCCCTTCCGACACAGCGTAGCGACGCATGGATAAGGCCACGTACGTACA
ATTCGACGCCTCTCCTGCGCAGGGGTGTTTGA
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