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Homology
BLAST of mRNA_H-paniculata_contig19653.5000.1 vs. uniprot
Match: D7FQS8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQS8_ECTSI) HSP 1 Score: 199 bits (505), Expect = 9.350e-56 Identity = 95/166 (57.23%), Postives = 118/166 (71.08%), Query Frame = 3
Query: 3 GLEGIMSKTRVSAEHELAWENLQKDRAAMVLQRMYRVRAARKKRTLVRWKWDMEMAKLKSKGTSDAAVIIQCWWRVMRAKWLALQLLLVTIEVLWDPGLNQKYYFNHGLGNATWGVPSMLTRWRGLAARMPDIPEWVQISRVYGQVTWGPFCAVNYSREMRSNAKP 500
GLEGI +K R + E WE L ++RAA +QR Y AARK+R L+RWKWD+E A+ K++ T+ A IQCWWR++RAKWLALQLL +TIEVLWDPGLNQ+YYFNHGL A W VPSML RWRG A+MP +PEWV ISR++GQ + N +R + KP
Sbjct: 623 GLEGIEAKKRAVEDREKEWEELLRNRAATTMQRQYHAWAARKRRALLRWKWDVEKARAKNRETTLMATRIQCWWRILRAKWLALQLLQITIEVLWDPGLNQQYYFNHGLEQAAWEVPSMLRRWRGRGAKMPSVPEWVLISRLFGQSYF-----YNTRSRLRQDEKP 783
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 191.4 |
| Seed ortholog evalue | 3.3e-46 |
| Seed eggNOG ortholog | 2880.D7FQS8 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | EF-hand, calcium binding motif |
| EggNOG OGs | 2CJ0G@1,2SKVK@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 646 |
| Cds size | 492 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19653.5000.1 >prot_H-paniculata_contig19653.5000.1 ID=prot_H-paniculata_contig19653.5000.1|Name=mRNA_H-paniculata_contig19653.5000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MSKTRVSAEHELAWENLQKDRAAMVLQRMYRVRAARKKRTLVRWKWDMEM
AKLKSKGTSDAAVIIQCWWRVMRAKWLALQLLLVTIEVLWDPGLNQKYYF
NHGLGNATWGVPSMLTRWRGLAARMPDIPEWVQISRVYGQVTWGPFCAVN
YSREMRSNAKPTH* back to topmRNA from alignment at H-paniculata_contig19653:1778..4093- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig19653.5000.1 ID=mRNA_H-paniculata_contig19653.5000.1|Name=mRNA_H-paniculata_contig19653.5000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2316bp|location=Sequence derived from alignment at H-paniculata_contig19653:1778..4093- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGGTTGGAGGGTATCATGTCCAAGACGAGAGTGTCGGCGGAGCATGAA
TTGGCCTGGGAGAATCTCCAAAAGGACAGGTTAGGTTCGGGTAAAGCTCT
CTAGGCAATTGAAGTAGCTACGGTAAGAAACAAGTGCGTCCGACAGCCTA
CTATACGAGTGGCACCAGTGTGTTCGGCGAAACGAACGTCCGGCGGCTTT
AGTGTTTGCCTGTTTGCCTTTCGACCGTTCCGTGGATGATGTCATTCTCC
ATTCTGTGGTTTTCCTTTCATGCGAAAACGTATGATTGGGAAGTGCAACG
TACACGTGAAGACACACAAATAATAAATAAGCGAACATAAAAAGACGAAA
TGAGAGAAGGACGACCCGGCGAAGCAAAAAAATCTTATCGTGAAGATGGC
AGCAAACGTGTTGATTCCCCGTCAACGACGACACGTCCGCGAGGCCAAAA
ACTCCCAAGCACCGTTCCCTCCTCTACCAAGCAATCCGACCGATGTGGAC
TAGAAACCGTTCCAGACTTCATATACTGTCTACGCTGAGTACAGAAAGTA
CGACGCCGAGACGCCAAGTTTGTCTTTTTAAGGTTTGCACCCAAACGCTA
CACAAACTTGGTGACAATGATTCCGGCGTAGAGCACATCGGAGTTAGGAC
CAGAAAGAGGGCGGGAACGCTGGAGGGAGAGGTAGCGTATGGCGAGGGTA
CCTTTCACAAGGTGTGGGCATTCCTCGTGGACGACGGCAACGACAGCAAG
GAGGACTAAATTAGAAAGGTTTCACCGCCTTCGGCAAAATACACACGCAC
ACATATATACATCCACACGAAAAAGGAGGTGTTTTGGATGATTCAATTTT
TTTCACGGCGTATATTCAGTGTTAAATGACCACCGCTTGGCTCAAAATTT
CGGAGTTCGACTCCAAGAATGTGCACAATTCCAACACAAGAAAAATATGT
CATCAGATATGATTACGGCCTTCTATAGACGTAGTCAACTACACGTTTGG
CCCGGGGGAAATATGTCATGTACACCCAATAAGGGTCATCACTACAGACT
TCGTCGAAATAAGATTGTCTTGATCAGTTCTGTCTTGCCGGCTGGTTTCG
TGGACAGAGCTGCCATGGTGCTCCAGCGAATGTATCGCGTCCGAGCCGCG
AGGAAAAAACGGACCCTTGTGCGGTGGAAGTGGGACATGGAGATGGCGAA
GCTAAAATCCAAGGGAACAAGTGACGCAGCCGTTATTATACAGTGCTGGT
GGAGAGTGATGCGAGCTAAGTGGCTTGCGTTGCAGCTTCTGCTGGTCACG
ATAGAGGTAGGAGAAGGCTAGGGGGAGGGGGAGGAAAAATTAGCAAACTC
CCGATCAACCATTACTTTGAGGTGCAACAAAATGTTTGTTCGTGACGAAT
GGAGGAGCTTGTCTTGTGCCTTGTAACCAAGCGTAGATTTTAGGGGGTGA
TTGCCCTCGCACTTGAAAGAGGAGAGCACATCGCGGGACGCTGGACTGTC
GACGGGTGGCATGTACGAGCGCTTGCAGCAGACCAGGAGCTCGATGTAGA
GCAGCTACGGTGCAGCGACTATGCCAGCCAGGATGTGTTTTTCTGCTGAA
GACGTGCTAACCCCCGAAAAACAGTGGTGTTGCTGCTGTTTTTGGAAGGG
AGGGTGTGAACAGTGAACACAAGGGTAAATGTGGTCGATATCAGCATCCC
ATATGGTGCTTGAGGGTCTAGGAGAGAGGAGAGATGTTAAGGACCCTCGT
AGATGAAGATGCGGTTATCTCTTCTCCCCTGGTGACAGATTCACTGTGTC
CTCAGAACTGTTCTAAGAACTGTTCTAAGAACTGTTCAAGGAGAACGTTC
GCAATTTCAAAGGTTACGCATCGCCCACCCCTTTTCCCCCTTCCGCCCCC
CTCGCGTGCGCGGGTCGCCACCTTCCCTCTCTACCCTTCGACGAACAGGT
GCTATGGGACCCTGGATTAAATCAAAAATACTATTTTAACCATGGGCTGG
GAAATGCCACGTGGGGAGTTCCCAGTATGCTCACAAGATGGCGAGGCCTC
GCCGCACGAATGCCCGACATACCAGAATGGGTGCAAATTTCCAGGGTTTA
TGGCCAGGTGACTTGGGGGCCATTTTGCGCAGTAAATTATTCGAGGGAAA
TGAGGTCGAACGCGAAACCAACCCACTAGTGTAGTGCGGGCAAGAGGTAC
CATGGTCAGCTAGTGGTACCTCGCGAGGTGTAGCTAGTTACTTGAAAGAT
ACGTTTATGTCAGGCTGACCACTTGCGGGGTCAGTGTCGACAGAGCTGCA
TAGACTTGAGGTCTGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig19653:1778..4093- >mRNA_H-paniculata_contig19653.5000.1 ID=mRNA_H-paniculata_contig19653.5000.1|Name=mRNA_H-paniculata_contig19653.5000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig19653:1778..4093- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAAGACGAGAGTGTCGGCGGAGCATGAATTGGCCTGGGAGAATCT
CCAAAAGGACAGATGTCCAAGACGAGAGTGTCGGCGGAGCATGAATTGGC
CTGGGAGAATCTCCAAAAGGACAGAGCTGCCATGGTGCTCCAGCGAATGT
ATCGCGTCCGAGCCGCGAGGAAAAAACGGACCCTTGTGCGGTGGAAGTGG
GACATGGAGATGGCGAAGCTAAAATCCAAGGGAACAAGTGACGCAGCCGT
TATTATACAGTGCTGGTGGAGAGTGATGCGAGCTAAGTGGCTTGCGTTGC
AGCTTCTGCTGGTCACGATAGAGAGCTGCCATGGTGCTCCAGCGAATGTA
TCGCGTCCGAGCCGCGAGGAAAAAACGGACCCTTGTGCGGTGGAAGTGGG
ACATGGAGATGGCGAAGCTAAAATCCAAGGGAACAAGTGACGCAGCCGTT
ATTATACAGTGCTGGTGGAGAGTGATGCGAGCTAAGTGGCTTGCGTTGCA
GCTTCTGCTGGTCACGATAGAGGTGCTATGGGACCCTGGATTAAATCAAA
AATACTATTTTAACCATGGGCTGGGAAATGCCACGTGGGGAGTTCCCAGT
ATGCTCACAAGATGGCGAGGCCTCGCCGCACGAATGCCCGACATACCAGA
ATGGGTGCAAATTTCCAGGGTTTATGGCCAGGTGACTTGGGGGCCATTTT
GCGCAGTAAATTATTCGAGGGAAATGAGGTCGAACGCGAAACCAACCCAC
TAGGTGCTATGGGACCCTGGATTAAATCAAAAATACTATTTTAACCATGG
GCTGGGAAATGCCACGTGGGGAGTTCCCAGTATGCTCACAAGATGGCGAG
GCCTCGCCGCACGAATGCCCGACATACCAGAATGGGTGCAAATTTCCAGG
GTTTATGGCCAGGTGACTTGGGGGCCATTTTGCGCAGTAAATTATTCGAG
GGAAATGAGGTCGAACGCGAAACCAACCCACTAG back to top
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