mRNA_H-paniculata_contig19600.4978.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19600.4978.1
Unique NamemRNA_H-paniculata_contig19600.4978.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19600.4978.1 vs. uniprot
Match: D8LS28_ECTSI (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS28_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.990e-14
Identity = 33/50 (66.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 LCREHSKNMSVEMGLVLQGETEAELPESVLGALRLEELDLQDTSRHKPLW 150
            LCREH+K++S+E+GL+L GE E+ELPESVLG LR+++LD QDT+RH+ LW
Sbjct:  854 LCREHAKSLSLEVGLILHGELESELPESVLGVLRIDKLDPQDTTRHRLLW 903
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BLAST of mRNA_H-paniculata_contig19600.4978.1 vs. uniprot
Match: A0A8J5J6C6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J6C6_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 9.780e-6
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 LCREHSKNMSVEMGLVLQGETEAELPESVLGALRLEELDLQDTSRHKPLWDTPSP 165
            LCR HS  ++V++G V++G  EAELPE++LG ++   LDL      + L  TPSP
Sbjct:  215 LCRSHSTRLTVDVGYVVEGRDEAELPEALLGCVQYNHLDLSIFVAPQNLKPTPSP 269
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BLAST of mRNA_H-paniculata_contig19600.4978.1 vs. uniprot
Match: A0A2V0NMM6_9CHLO (EDR2_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NMM6_9CHLO)

HSP 1 Score: 48.5 bits (114), Expect = 4.710e-5
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 LCREHSKNMSVEMGLVLQGETEAELPESVLGALRLEELDLQ-----DTSRHKPLWDTPSP 165
            + R  +K++ +++G VL+G+TE ELPE++LGA RL  +D+      DTSR  P+ D  +P
Sbjct: 1078 MVRGATKSLIIDLGFVLEGQTEEELPEALLGAYRLHFMDIGAAQYLDTSRELPMLDAVAP 1137
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19600.4978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LS28_ECTSI1.990e-1466.00PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A8J5J6C6_9STRA9.780e-645.45Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A2V0NMM6_9CHLO4.710e-541.67EDR2_C domain-containing protein n=1 Tax=Raphidoce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19600contigH-paniculata_contig19600:3639..3806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size144
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929486.575407-CDS-H-paniculata_contig19600:3638..37821622929486.575407-CDS-H-paniculata_contig19600:3638..3782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19600 3639..3782 -
1691480882.6589518-CDS-H-paniculata_contig19600:3638..37821691480882.6589518-CDS-H-paniculata_contig19600:3638..3782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19600 3639..3782 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929486.6658235-UTR-H-paniculata_contig19600:3782..38061622929486.6658235-UTR-H-paniculata_contig19600:3782..3806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19600 3783..3806 -
1691480882.6717148-UTR-H-paniculata_contig19600:3782..38061691480882.6717148-UTR-H-paniculata_contig19600:3782..3806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19600 3783..3806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19600.4978.1prot_H-paniculata_contig19600.4978.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19600 3639..3782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19600.4978.1

>prot_H-paniculata_contig19600.4978.1 ID=prot_H-paniculata_contig19600.4978.1|Name=mRNA_H-paniculata_contig19600.4978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
MSVEMGLVLQGETEAELPESVLGALRLEELDLQDTSRHKPLWDTPSP*
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mRNA from alignment at H-paniculata_contig19600:3639..3806-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19600.4978.1 ID=mRNA_H-paniculata_contig19600.4978.1|Name=mRNA_H-paniculata_contig19600.4978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig19600:3639..3806- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGTCGGGAGCACTCGAAAAATATGTCGGTAGAGATGGGGCTCGTTTT
GCAAGGCGAGACAGAGGCCGAGCTTCCAGAAAGTGTGCTGGGCGCGCTGA
GGTTAGAAGAGCTGGATTTACAGGACACATCGCGACATAAGCCATTATGG
GACACACCGTCCCCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19600:3639..3806-

>mRNA_H-paniculata_contig19600.4978.1 ID=mRNA_H-paniculata_contig19600.4978.1|Name=mRNA_H-paniculata_contig19600.4978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig19600:3639..3806- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGTAGAGATGGGGCTCGTTTTGCAAGGCGAGACAGAGGCCGAGCT
TCCAGAAAGTGTGCTGGGCGCGCTGAGGTTAGAAGAGCTGGATTTACAGG
ACACATCGCGACATAAGCCATTATGGGACACACCGTCCCCTTGAATGTCG
GTAGAGATGGGGCTCGTTTTGCAAGGCGAGACAGAGGCCGAGCTTCCAGA
AAGTGTGCTGGGCGCGCTGAGGTTAGAAGAGCTGGATTTACAGGACACAT
CGCGACATAAGCCATTATGGGACACACCGTCCCCTTGA
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