mRNA_H-paniculata_contig196.4975.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig196.4975.1
Unique NamemRNA_H-paniculata_contig196.4975.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig196.4975.1 vs. uniprot
Match: D7FSK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK6_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.030e-20
Identity = 81/222 (36.49%), Postives = 111/222 (50.00%), Query Frame = 1 
Query:    1 VLASSTVSLERWTAGTCIPALRPPSNVNAFRDRLTDQLAGFLCAGFRSRTSRFVKKRLALQSRSRPESISDGEQRGKFTIAAFGAFDEIEDEKAQGRAGRVCAGVKKPEDEKDSDDEELKDPRSFIRQPPPPQCFLETPADIMEAK-KRALRLEMLMKMIDEYHAKHGRHA-------------DITYPASGNAG------ATPCNDEDTA--HQCERTGEG 600
            +LA STVSLE WTA T I  L PP++  AF+  L +QLA  L AGFRSRTSR  +KR A +++ +   +     R + T+      ++       GR G++       ED+  S++ +    R     PPP    L +P D    + KRALRLEML +M+D++HAKHGR                +  PA G+A       AT C+DE     H  ER  EG
Sbjct:   39 LLAKSTVSLEDWTATTGIATLSPPTDNRAFKKILEEQLAALLGAGFRSRTSRLERKRAAREAQQQGGGV-----RWRGTLLELSEMEK-------GRLGQL------EEDDNGSENNDANPDR-----PPPKLPLLLSPRDSTPLEQKRALRLEMLTRMVDDFHAKHGRSRRXXXXXXXXXEKRGVGAPAPGDARDPTTVVATGCDDESAVGGHDGERVREG 237
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig196.4975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSK6_ECTSI1.030e-2036.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig196contigH-paniculata_contig196:38036..39898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size636
Cds size633
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig196.4975.1prot_H-paniculata_contig196.4975.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig196 38036..39897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929486.2104087-CDS-H-paniculata_contig196:38035..380751622929486.2104087-CDS-H-paniculata_contig196:38035..38075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 38036..38075 +
1691480882.4846826-CDS-H-paniculata_contig196:38035..380751691480882.4846826-CDS-H-paniculata_contig196:38035..38075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 38036..38075 +
1622929486.2296689-CDS-H-paniculata_contig196:38738..390191622929486.2296689-CDS-H-paniculata_contig196:38738..39019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 38739..39019 +
1691480882.4932933-CDS-H-paniculata_contig196:38738..390191691480882.4932933-CDS-H-paniculata_contig196:38738..39019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 38739..39019 +
1622929486.2464776-CDS-H-paniculata_contig196:39585..398971622929486.2464776-CDS-H-paniculata_contig196:39585..39897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 39586..39897 +
1691480882.5012562-CDS-H-paniculata_contig196:39585..398971691480882.5012562-CDS-H-paniculata_contig196:39585..39897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 39586..39897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig196.4975.1

>prot_H-paniculata_contig196.4975.1 ID=prot_H-paniculata_contig196.4975.1|Name=mRNA_H-paniculata_contig196.4975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
VLASSTVSLERWTAGTCIPALRPPSNVNAFRDRLTDQLAGFLCAGFRSRT
SRFVKKRLALQSRSRPESISDGEQRGKFTIAAFGAFDEIEDEKAQGRAGR
VCAGVKKPEDEKDSDDEELKDPRSFIRQPPPPQCFLETPADIMEAKKRAL
RLEMLMKMIDEYHAKHGRHADITYPASGNAGATPCNDEDTAHQCERTGEG
LRGTGVGQVGG
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mRNA from alignment at H-paniculata_contig196:38036..39898+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig196.4975.1 ID=mRNA_H-paniculata_contig196.4975.1|Name=mRNA_H-paniculata_contig196.4975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1863bp|location=Sequence derived from alignment at H-paniculata_contig196:38036..39898+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCTCGCATCGTCTACGGTTTCGCTAGAAAGATGGACAGGCATGAACCA
TGTGAATGTAGATATGTATTTCGACGAGTGCGATATGGTGTGGAGACAGC
CAACAGCACAGATGCGTTGGTGATGTACCTGGTGGTGCCGAAGATTTGAC
GTAATTTATTTTTCAGTGTTTTGCAGACAGGTCGGCGGCGTGGTCGTAAT
ATGCCATAGGTTGATGTGTAAATTCAATTTTCAGGCATGTATTGATAGGC
TTCTCAGGTGACTAGCATCGCTGGGTGTGAGATAGGATCCCACGTGAGCT
CCCATATCGGGTAACCTTGTGAATGGCAGCTAGGTATAAGGTATGGAGGT
GTGGATTAGAGGAAAATACCGGCCAAGAATACAGACGGATTGTCAGTGTA
GCATTGATCTCAATCTTTCAAGAGCAGCACGACAAAGTACCAAGTGAGAA
GCAAAAGCACGATGGGTGTATCTAAAACTGGTGGAAATACTACACTGTTG
AGCGCCCTCAATGATTCGATTTGCAACATTTACGTAGTGACAATCTACTG
GCAACGCTATACACCAGCTAACTACAATACGCCCCCCGCCCCTCCTGTTC
CATCATTTTCTTGGTCCTCGAAGCCATTGAACACAGACATATTTTCCACG
AACTGACCAACGAAGCCCCTAAAATCGATCAATATGCCCACTGCCCTGTG
CAGCCGGCACTTGTATACCCGCACTTCGGCCGCCGTCAAACGTAAACGCA
TTTCGGGACAGATTAACCGACCAGTTGGCGGGATTTCTGTGCGCGGGATT
TCGGAGCCGAACAAGCCGATTTGTGAAGAAACGCTTGGCCCTTCAGTCAC
GATCGCGGCCGGAGAGCATCTCCGACGGAGAGCAGAGAGGAAAATTCACT
ATCGCTGCCTTTGGTGCCTTTGATGAGATTGAGGACGAAAAGGCACAGGG
GAGGGCTGGCAGGGTTTGCGCTGGTGTAAAAAAGGTCGACCAATTGCAGA
TCAATCCAAAAATAGAGGAGAACATTGTTGCGGAAATGCTTCACCCTCCG
GACAAATACGAATAGAACATTCGCAACTATCTCGAATTATCATTATTTTT
CTCGGGTAAACAGTTATTTACTCGTTTACAAATCTACGAATGGTCACTCT
GCAGATGGTCACCAGGTGATCGTATACCCACCAAACAGTCACACATGCAC
GTCCTGTTTATTCTCCGGATGGTACTGTACAGATTGACTATTCTATCTGC
CTGAGCTGTTCGATGCTCTATGGTAACTTGAGTCCACTGCATATTTTTCG
CGTCACATGGACATCTTCCCCAACTCAAACAGATATAGTACTCATTCCAG
ATTTCTCGTATTTATTCGTGTCTTGTACTCGTGTTTGTCCGGGGGGTAAA
ATGCTTTCACTGGTTTTTCGTGGGTACCTCGTATCCTGCAGTCATGATCA
GTGCTTGTGCTTGGAGACAAACATCTTGATTGAAATCAGTCATTTTCCAG
TTGCACCCGACCCGTGTTCTCGATGCATATACGCACGCCCCTGGAAGCAG
CCGGAGGATGAAAAAGATAGCGACGACGAGGAGCTAAAGGACCCTAGATC
GTTCATTCGACAACCGCCGCCACCCCAGTGCTTCTTGGAAACACCGGCCG
ACATTATGGAAGCTAAAAAACGGGCTTTACGTTTGGAAATGCTTATGAAG
ATGATCGACGAATACCACGCTAAGCATGGCCGACATGCCGACATTACGTA
TCCAGCTAGTGGCAACGCGGGGGCTACTCCGTGTAATGATGAGGACACCG
CTCACCAGTGTGAACGCACTGGGGAAGGACTAAGGGGTACCGGTGTTGGG
CAAGTGGGCGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig196:38036..39898+

>mRNA_H-paniculata_contig196.4975.1 ID=mRNA_H-paniculata_contig196.4975.1|Name=mRNA_H-paniculata_contig196.4975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig196:38036..39898+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCTCGCATCGTCTACGGTTTCGCTAGAAAGATGGACAGGTGCTCGCAT
CGTCTACGGTTTCGCTAGAAAGATGGACAGCCGGCACTTGTATACCCGCA
CTTCGGCCGCCGTCAAACGTAAACGCATTTCGGGACAGATTAACCGACCA
GTTGGCGGGATTTCTGTGCGCGGGATTTCGGAGCCGAACAAGCCGATTTG
TGAAGAAACGCTTGGCCCTTCAGTCACGATCGCGGCCGGAGAGCATCTCC
GACGGAGAGCAGAGAGGAAAATTCACTATCGCTGCCTTTGGTGCCTTTGA
TGAGATTGAGGACGAAAAGGCACAGGGGAGGGCTGGCAGGGTTTGCGCTG
GTGTAAAAAAGCCGGCACTTGTATACCCGCACTTCGGCCGCCGTCAAACG
TAAACGCATTTCGGGACAGATTAACCGACCAGTTGGCGGGATTTCTGTGC
GCGGGATTTCGGAGCCGAACAAGCCGATTTGTGAAGAAACGCTTGGCCCT
TCAGTCACGATCGCGGCCGGAGAGCATCTCCGACGGAGAGCAGAGAGGAA
AATTCACTATCGCTGCCTTTGGTGCCTTTGATGAGATTGAGGACGAAAAG
GCACAGGGGAGGGCTGGCAGGGTTTGCGCTGGTGTAAAAAAGCCGGAGGA
TGAAAAAGATAGCGACGACGAGGAGCTAAAGGACCCTAGATCGTTCATTC
GACAACCGCCGCCACCCCAGTGCTTCTTGGAAACACCGGCCGACATTATG
GAAGCTAAAAAACGGGCTTTACGTTTGGAAATGCTTATGAAGATGATCGA
CGAATACCACGCTAAGCATGGCCGACATGCCGACATTACGTATCCAGCTA
GTGGCAACGCGGGGGCTACTCCGTGTAATGATGAGGACACCGCTCACCAG
TGTGAACGCACTGGGGAAGGACTAAGGGGTACCGGTGTTGGGCAAGTGGG
CGGGCCGGAGGATGAAAAAGATAGCGACGACGAGGAGCTAAAGGACCCTA
GATCGTTCATTCGACAACCGCCGCCACCCCAGTGCTTCTTGGAAACACCG
GCCGACATTATGGAAGCTAAAAAACGGGCTTTACGTTTGGAAATGCTTAT
GAAGATGATCGACGAATACCACGCTAAGCATGGCCGACATGCCGACATTA
CGTATCCAGCTAGTGGCAACGCGGGGGCTACTCCGTGTAATGATGAGGAC
ACCGCTCACCAGTGTGAACGCACTGGGGAAGGACTAAGGGGTACCGGTGT
TGGGCAAGTGGGCGGG
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