mRNA_H-paniculata_contig196.4974.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig196.4974.1
Unique NamemRNA_H-paniculata_contig196.4974.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig196.4974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig196contigH-paniculata_contig196:36349..36966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_000340.1
Exons1
Model size618
Cds size618
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929486.1319366-CDS-H-paniculata_contig196:36348..369661622929486.1319366-CDS-H-paniculata_contig196:36348..36966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 36349..36966 +
1691480882.474961-CDS-H-paniculata_contig196:36348..369661691480882.474961-CDS-H-paniculata_contig196:36348..36966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig196 36349..36966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig196.4974.1prot_H-paniculata_contig196.4974.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig196 36349..36966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig196.4974.1

>prot_H-paniculata_contig196.4974.1 ID=prot_H-paniculata_contig196.4974.1|Name=mRNA_H-paniculata_contig196.4974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MRAGTLLSSSERVEIEDAATPNNAARGAERWLAVAKSKNCGTLSLSLFYP
STLERTAYSNTGVELNTGAMKSGRAGEDPGSADRVRENVSVPYVKQPRIS
LSATWKDWVDLGYGPLQWMSHRQKRFFGRLALSWVAIGEQEKADTELPRQ
SKLGLTTAPSSNAFLQFRPTLATKTRMVGPVTRQEAQRCHTHNLDPSEHA
SSGSTP
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mRNA from alignment at H-paniculata_contig196:36349..36966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig196.4974.1 ID=mRNA_H-paniculata_contig196.4974.1|Name=mRNA_H-paniculata_contig196.4974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at H-paniculata_contig196:36349..36966+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGCAGGAACTTTGCTGTCGTCCAGCGAAAGAGTCGAAATAGAGGA
TGCGGCGACACCAAACAACGCTGCCCGTGGCGCAGAGAGATGGCTCGCAG
TGGCAAAATCGAAGAACTGCGGAACACTATCTCTGTCCCTCTTTTACCCG
TCGACACTCGAGCGAACTGCATACAGCAACACTGGGGTCGAACTGAATAC
TGGGGCAATGAAGTCTGGTCGTGCGGGGGAGGATCCGGGATCCGCTGACC
GTGTACGAGAAAACGTAAGTGTACCATATGTGAAGCAGCCGAGGATATCA
TTATCTGCGACCTGGAAAGATTGGGTAGACCTCGGATACGGCCCGTTGCA
ATGGATGTCTCATCGACAAAAGAGATTCTTCGGCAGGTTGGCCCTCTCAT
GGGTGGCAATCGGAGAACAAGAAAAGGCCGACACAGAGTTACCACGTCAA
AGTAAGCTTGGTCTCACAACGGCCCCATCAAGCAATGCTTTTCTACAATT
TAGACCCACTCTTGCTACTAAAACACGGATGGTTGGCCCCGTCACGAGAC
AGGAAGCGCAACGTTGTCATACGCACAACTTGGATCCATCGGAACATGCT
TCCAGCGGTAGCACACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig196:36349..36966+

>mRNA_H-paniculata_contig196.4974.1 ID=mRNA_H-paniculata_contig196.4974.1|Name=mRNA_H-paniculata_contig196.4974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig196:36349..36966+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGCAGGAACTTTGCTGTCGTCCAGCGAAAGAGTCGAAATAGAGGA
TGCGGCGACACCAAACAACGCTGCCCGTGGCGCAGAGAGATGGCTCGCAG
TGGCAAAATCGAAGAACTGCGGAACACTATCTCTGTCCCTCTTTTACCCG
TCGACACTCGAGCGAACTGCATACAGCAACACTGGGGTCGAACTGAATAC
TGGGGCAATGAAGTCTGGTCGTGCGGGGGAGGATCCGGGATCCGCTGACC
GTGTACGAGAAAACGTAAGTGTACCATATGTGAAGCAGCCGAGGATATCA
TTATCTGCGACCTGGAAAGATTGGGTAGACCTCGGATACGGCCCGTTGCA
ATGGATGTCTCATCGACAAAAGAGATTCTTCGGCAGGTTGGCCCTCTCAT
GGGTGGCAATCGGAGAACAAGAAAAGGCCGACACAGAGTTACCACGTCAA
AGTAAGCTTGGTCTCACAACGGCCCCATCAAGCAATGCTTTTCTACAATT
TAGACCCACTCTTGCTACTAAAACACGGATGGTTGGCCCCGTCACGAGAC
AGGAAGCGCAACGTTGTCATACGCACAACTTGGATCCATCGGAACATGCT
TCCAGCGGTAGCACACCGATGAGAGCAGGAACTTTGCTGTCGTCCAGCGA
AAGAGTCGAAATAGAGGATGCGGCGACACCAAACAACGCTGCCCGTGGCG
CAGAGAGATGGCTCGCAGTGGCAAAATCGAAGAACTGCGGAACACTATCT
CTGTCCCTCTTTTACCCGTCGACACTCGAGCGAACTGCATACAGCAACAC
TGGGGTCGAACTGAATACTGGGGCAATGAAGTCTGGTCGTGCGGGGGAGG
ATCCGGGATCCGCTGACCGTGTACGAGAAAACGTAAGTGTACCATATGTG
AAGCAGCCGAGGATATCATTATCTGCGACCTGGAAAGATTGGGTAGACCT
CGGATACGGCCCGTTGCAATGGATGTCTCATCGACAAAAGAGATTCTTCG
GCAGGTTGGCCCTCTCATGGGTGGCAATCGGAGAACAAGAAAAGGCCGAC
ACAGAGTTACCACGTCAAAGTAAGCTTGGTCTCACAACGGCCCCATCAAG
CAATGCTTTTCTACAATTTAGACCCACTCTTGCTACTAAAACACGGATGG
TTGGCCCCGTCACGAGACAGGAAGCGCAACGTTGTCATACGCACAACTTG
GATCCATCGGAACATGCTTCCAGCGGTAGCACACCG
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