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Homology
BLAST of mRNA_H-paniculata_contig196.4972.1 vs. uniprot
Match: D7FSK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK8_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 5.190e-21 Identity = 53/98 (54.08%), Postives = 66/98 (67.35%), Query Frame = 3
Query: 216 MSSALTSALRRAAVQPKAAPFRAVTQMRTMS-----------AQQSFQKNWLSDKGAWPVLGVISGAVVFSSFWGISTLMTNPDVRINRTMRTTVIRP 476
MSS ++SA+RRA +QPK FRA T T A +SF++ WLSDKGAWPV+GVI A+ F ++W STL+TNPDVRINRT+R T IRP
Sbjct: 1 MSSVVSSAMRRAVMQPKPPMFRAATVNLTRGMASSEGTPKYGAAKSFKEAWLSDKGAWPVMGVIGFAITFVTYWSFSTLLTNPDVRINRTIRETTIRP 98
BLAST of mRNA_H-paniculata_contig196.4972.1 vs. uniprot
Match: A0A6H5KK83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK83_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 4.090e-18 Identity = 51/98 (52.04%), Postives = 63/98 (64.29%), Query Frame = 3
Query: 216 MSSALTSALRRAAVQPKAAPFRAVTQMRTMS-----------AQQSFQKNWLSDKGAWPVLGVISGAVVFSSFWGISTLMTNPDVRINRTMRTTVIRP 476
MSS ++SA+RRA +QPK FR T T A +SF++ WLSD GAWPV+GVI AV F ++W STL T+PDVRINRT+R T IRP
Sbjct: 27 MSSVVSSAMRRAVMQPKPPMFRTATVNLTRGMASGEGAPKYGAAKSFKEAWLSDIGAWPVIGVIGFAVTFVTYWSFSTLATHPDVRINRTIRETTIRP 124
BLAST of mRNA_H-paniculata_contig196.4972.1 vs. uniprot
Match: A0A4D9DGT0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGT0_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 5.590e-7 Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 3
Query: 276 FRAVTQMRTMSAQ--------QSFQKNWLSDKGAWPVLGVISGAVVFSSFWGISTLMTNPDVRINRTMRTTVIR 473
F V Q RT+S +SF WL DKGAWPV+G+I GA+VF + + +M +PDVRI + R IR
Sbjct: 9 FARVQQRRTLSTSVPSGVRYGKSFGATWLGDKGAWPVIGIIGGALVFCGSFISNKIMFHPDVRITPSKRNADIR 82
BLAST of mRNA_H-paniculata_contig196.4972.1 vs. uniprot
Match: W7TS82_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TS82_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 3.270e-6 Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 3
Query: 276 FRAVTQMRTMSAQ--------QSFQKNWLSDKGAWPVLGVISGAVVFSSFWGISTLMTNPDVRINRTMRTTVIR 473
F V Q+RT+S +SF WL DKGAWPV+G+I GA+VF + + +M +PDVRI + R I+
Sbjct: 29 FARVQQLRTLSTSVPSGVRYGKSFSATWLGDKGAWPVIGIIGGALVFCGSFISNKIMFHPDVRITPSKRNADIQ 102
BLAST of mRNA_H-paniculata_contig196.4972.1 vs. uniprot
Match: A0A836C9M1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M1_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 1.980e-5 Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 3
Query: 303 MSAQQSFQKN----WLSDKGAWPVLGVISGAVVFSSFWGISTLMTNPDVRINRTMRTTVIR 473
MS+ + K+ WL D+GAWP++G+IS A+ + G TL N DVR+++ R +V+R
Sbjct: 1 MSSGAQYNKSAKDIWLGDRGAWPIIGIISTALTVGTICGFRTLFFNSDVRVSKHSRKSVLR 61
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | NADH-ubiquinone reductase complex 1 MLRQ subunit |
| Ec32 ortholog | Ec-04_000360.1 |
| Exons | 3 |
| Model size | 1748 |
| Cds size | 348 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig196.4972.1 >prot_H-paniculata_contig196.4972.1 ID=prot_H-paniculata_contig196.4972.1|Name=mRNA_H-paniculata_contig196.4972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MSVRVAHGFEELGTNRVCERYPRPKMSSALTSALRRAAVQPKAAPFRAVT
QMRTMSAQQSFQKNWLSDKGAWPVLGVISGAVVFSSFWGISTLMTNPDVR
INRTMRTTVIRPGKE* back to topmRNA from alignment at H-paniculata_contig196:22556..28093- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig196.4972.1 ID=mRNA_H-paniculata_contig196.4972.1|Name=mRNA_H-paniculata_contig196.4972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5538bp|location=Sequence derived from alignment at H-paniculata_contig196:22556..28093- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAGATGGTAGGCTAATGGCCAACGAACAGCGTCGAAACGTCGAAATAC
TTTATTCAAAATATTTTTCTGGCGGTTTCAATACATAAAAGTTCCTGTTG
GAAATATAGCCGTTAACGTCTTGCAGCGTTTCCTCAGCTGATGAGTGTCA
GGGTGGCACATGGGTTCGAAGAACTGGGGACGAACAGAGTTTGCGAAAGA
TATCCCAGACCGAAAATGTCTTCTGCGTTGACCTCCGCGCTGCGCCGAGC
TGCTGTGCAGCCCAAGGCCGCGCCTTTCAGGCAAGTGGTTGATTTCCAGA
ATGTCTGAAAAGTTCCTGGAGAAACACACTACAACATCAAACACTTAGGG
TTGTTGGTCTTGAGCACGAGGATGAAATCGAGAGAGCGAGCTTGTTGTAA
CCTTCACCTTTGGTTTGTGCTTCTTTCCAAAGAACCTGTCATGGATTTGT
GTTGAGCGTTCGCTTTGATTGCGGAATTACCGCGGCTCCTTGTGCAGTGC
CCTTGCCCTGTGTTGCACTATCTGTACCAGGCATCGCAGATGAGCTCTAT
TTTCGGCCATGTCCCAACTAGTGTTGGGAGTTGGTCATGATGAGGAGGCT
CGTTACATATGATTGGCCCGGTTAGAGTATGCTGTATACCTGTAAACAAG
GTCATGGGGCCATGGTGGCAAGTGTTAAGTGGCAGATTGCCTGGTGCAGA
GTGCATCCAATACTACTCTTCACGATTTGTGCATTAATCGGTCAGCAGTA
GTCCCTAGTATATCTTCAGTACTTTGATACAAAGGTAATTGTACATAGAC
AGTGCAGGGAGATAACAAGTGCACTTGAGCACCGAACCATAGGTTCAGTG
TGGATGACAAACCATATGGGCCACAACACACATCGACAGTCACTTGAACT
GGCAGTTTGGTAGGCAGCTGTCTTTGCTGTTTGCAAGCCCGTCCTAGAAC
ATGAAAGACACGTCTGTTTCACCTGTATTCTGCGCCATCGACCTCAAATT
ACTCTTCCATTCGACCCATGCATATGCGGTATGTAAAACTGTGCCATCCT
TTCCTGATATTTCAGTCCGAAGTCAATTTGGGGTCTGTTCGCTGATCGTG
CTGGCTAACTGAACTATGCTTATTGCTTTTGGGTGTACGCTACTTTAATA
GATACCATATTATGGCCCCATCACTTACCAGCTGTAAAGCTATAAATTCC
ATACCCTGAACTGTTACGGTGGGTCTGCACACATACTGTATACTTTTAAT
CTGGAAGCGGTATTTTGATACATCTTGGTAGTTCGTGTCTTGAGCTTGAA
CACTCTACTCATCATTGCACAGTGTAAGTGAAAGACAGTTTGAGGAGCAG
CCTGATGAATAAATTCTATTTTTTTTGGAAAGGCTCCAAAGACCTTGCCT
TGTACATATATAAGTACCTCCTCCTCTTGAGCTCTGATCGAGACTACTGT
ACTGTGACGTAGTTTCGCACTGTGGAATGTGATTTGCGATTTATGTAACA
TATATACACTTTCATGGTATGAAAGCTCGATTCAACCACTTTCCACTATC
TTTGAAAGCACCACTGTTTGGTGTTATCTTGACTTGGTTTAGTGTTTAGT
GAAAAGATGGTATGTCGAGATTTCTCGGGCGAGCGATTCCTCCCTGGTGG
TCGCTCCTGTTGTTGTGGAGGAGATAGGAATAAGGTCTGTGGCTGTCCTT
TCTGAACAGTATTGTCGTTCTCTATAGGGTGTGAGCGCCTCCCTATCGAA
AACCAATTCCTCTAACCCTGAGAGTGAATGAACCATTAGATGCTGGCACG
ACGTTGAAAGTCAAATTTAAGAAGGAGGATGTGGACCTCAGAAAACGTGT
GAAATTTGCCAGGAGTCATTATTTCCAGGATGACGATGCGACAATGCTCA
GGTGTGGCTGCGGTAGTGCATGTGAGGACCGAATTCACGTCGTGGGGGAA
GGCCTCCCTCATAAGAGAGATGGATAAGGGAGTACGAAATGATGCGATAG
ACAGGCGTTCAAATCATCGGTTTACGAAAAGATAGCGATGGTTGTTCTAG
GAGATGGAAAATTGATCTAAAAAGGCGGGGCTTGCGGTAGATGAGATGTC
GAATAGTTTCGAGGACCTTTTTGAAAATGTGAAAAATATATGCCAGCTAT
TATAAAGCGATCTCATGAGAACAAACCTCCATCCTCTTGGACTTGTGGTC
AATGTATGAACTAATCTGGCATACTGAGCATGAAGGCGGTTACCCTTCTC
GTTGGTCTAATTTTGCTCGTGAGTGTAAACACAGATTTGAGGTGAGCTCC
ATAACTTCAACACGACTACCATGGAGTTACTTTGTGAGTGCTATAGGTTT
AATAACTGTTGCAAGTGGATTGATTTTCAAATTGGCTCGTGATTGTTGGA
TGGGACATCCTATTTTTTCATGGTATCATGTGAGTGCTATTTCTTTTTAC
TGGCAGTCACTCCCGTGTGATAAAGTCTTCCCCTGTCCGGTCCTGATTTT
TGTCAATTTTTCCGGGGGAAATCTTTATACATAAACCCGTAAACACCGAA
GACACTTGCTCCCTGGGTGGTGAGTATTCTTGGTATCCCATATACGACAG
AAGTTAGACACCACAGTATTACCATATCACACCATGGTGAAACAAATGAA
GACCTCCTTCCATTCACTGGATAATAGCTTGCGTAGCGCATGCATATTCT
TTTTCGAACCCTATGTGCTTTATTGAATTTATCGGGCTATCCATACGGTA
TGAACAAACTCCCCATGTGTGCAGATTTAACATGACCAGCCATGGTCGGC
CTGTGGGCCATGGAAGCTTGCCTTGTTTTACACACCCTGCACCTACCGTT
TTCACGCACGTAGGAGTCTAGTTTATAGTCTTCATTCTCTTTTTCCTCAC
GTCCCCGTGGTACCACAGCAACGTCAGTCATGGTCGGTGTTCATACGCTG
TCTTGGCGACTCGTGTTTGAGCATGTGATATGCTTGATCGGCCGAGTATT
GGAACATTAACCGTTCTAGATTATCAGGCAGGGTATCTCAGTGGTGTAGC
CGGAATTAACAGACGGCAACTGCACTCTCCTCTGCAAGGCTGTGCGAATT
CGTTCCTGGTAAGGGAGGCCACCCCGAACACAATGCATGTCCTTATAGAT
TGAACGCTGAACTTGAACATGGAATCTTGACGGACAAATTGCCAATGTGT
TTAAGTCGAGGGCGAGATTTGTACCGTATGGGTGTAGTTCTGCCTCCACT
ACTAATACGGGGATAACGTCAAATATGGCACGAACAGCAAGACATGATGT
CCAGGCAGCCATCGCACGTTTTCGACCATGGACCGTGTGCAGAGTAACCG
TGTCCTTTGCATGAGTGGCTTTTAAGTGTTTCATGTGAGAGGACTGCACA
GCGCCGCAATCTGCATTTAACTGATGATTTCGTTACTTTTTCCGTGTTTC
GGTCGTTTCTTTTTCTCTGTGTTCGATGTGCGAAACAGGGCTGTTACCCA
GATGCGCACTATGTCCGCTCAACAGTCGTTTCAGAAAAACTGGCTGTCTG
ACAAGGGGGTGAGTCATGCTCTATTTTACAAATGCTGTACAGAGCAGGTG
ACCTCGTAGTAGTTACTTCCTGCCAGAGAAGTGGTAGGTGATCATTATTC
ATGTTGATTGTGTGCCCTGGGTGTTTCCATCTTACCCTAGCTCTAGGCAA
TTGAACAAATGGGTTCGGAAAAGAAGAACAATTACCTACTTTGCGCGCCA
ACATGGGTGTGTAACACGCCGTTTCTATCAAACCCTGTAACCTTGAGAAG
AAAAGCAGGCAAATTCGAGATGCTCTATATACCATCGTGTCATTCATGTC
GCAGTACGTTATTGTGGGGTTGCGGTGCTCCAGACAGAGAAAACGCACCA
TGGAAATATCTCGTTCGATACGTCATCTCGATAGACACGCGGCATCGACC
GCGTAATGTCTCTCGTGTCGATGGAATCGAGTTCGGAGAAATTTTCCACC
CGTGTCTGATGTAGCCTGTATGTAGTAACCTATGATATTTGGATGTGGCT
ATGATTTACATAGAATACGAACTGACAGCAGTTGTGTCTTGTGTTTTTTT
GTTCTCCCATATTTTTCGTTTTTATCCAAATATATTGCAGGCGTGGCCTG
TGCTTGGTGTGATATCGGGTGCCGTTGTGTTCAGTTCATTCTGGGGTATC
TCGACCCTCATGACCAACCCGGATGTGCGCATTAACCGGACGATGCGGAC
CACTGTCATCCGCCCCGGCAAAGAGTAAATCTCTATTGGAGCGAAAGAGC
AAATTATTGAGCTTGATAGGGGTGGCATCTAGGGTGGAACCAGCGTATTT
GTGCCAAGGAGCGGTAACTGCCCTGTCGGGGTTGGACATGTACTCATGGG
GGGCTGAAGGAGGCAGGTGGCATGCAGTAGAGAAGGCGATGCTGGTCAAG
AGGGCCGATATAGCCCAGAAAGCCTGACGGACATCGCCGATATCCTGGAG
TATGTGTTTGCCGCACACTGCATCACCACGCGAATATTTGTTGTCAATGT
AATGCAACCACTGGTTGCATCAGGATTGCGGCAGCTGGAAGGGATTGAGG
AAACTACTTGAAGCTGGATTCCTTGGTCAGACTGCGTCAAGGTTACGTCG
CTCGCATGGGCGACGTGATGTAAAGAACGAATTCCTGTTTGTGAATGATT
CACGTTTTTTTCACCTGGTAAGGTGTTGTCTGCAGAGGCGCAGATTACAA
GGGCGATTCTGTAGTAGTTGTACGTACCCCAACATGAGTAGGGTATTAAA
ACTCAACGTCAGCGACAGCCAGGGGTTGAGGTGTATAATACGAGAGGTCG
ACGTTTGTTTTTGGGAGCTGAGGGTGCGGGTTGAGCCGATCCCTGAACCC
AAGAGCCCTAGTCGAAACGCCGCGGAGTGTCGTGTGCAACATCATACTCA
ACACGCAACCAAAGACATTGGTAGAATCAGACAAAATCAGATGGTAGGAA
GGTAACTTGTTTGTGTAGAGTACGTTTTTTATGTTCGGAAACTTTGGTTC
CATCCGTCATGATACAGGGCTTTGTTGGCTTCTACAAGTATGTGAAGAGT
CACAATATGACGAATAATTCGGAAGCAGCAAGAAAAAGTTGGAACGTTTA
AAGGTACTGTCATACCTTACAGTTTTTCACGGAAGATATCTTCATTTTTC
CCATGGATCCCACTTCCACCCATTTTTTTTGGATGAATGGTTTCTAGAAC
TTGAATACTCCTCGAGATTAAGGCTGGGATTTTCTTCTCGATATAGTTAA
TATCTGTGCGTGGCCCTAATACGATGCACAGACGAGGAACATATTCGTTT
TGGAATGCTTTTGTGAAGCAGAAAAGGTGAAAGGACTAACTCGACCTTCA
AATGTGCGTTTGACGGGAACTGAAGAACAGGCGAAAGGGCAGTCAACCCT
TCATGCACTAAAAGATATATTTGGAAATACGAAAATATTCACATATATTC
CTCTCTAAAGTGTGTAAAATTATATATGACGATGTAAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig196:22556..28093- >mRNA_H-paniculata_contig196.4972.1 ID=mRNA_H-paniculata_contig196.4972.1|Name=mRNA_H-paniculata_contig196.4972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig196:22556..28093- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGTCAGGGTGGCACATGGGTTCGAAGAACTGGGGACGAACAGAGT
TTGCGAAAGATATCCCAGACCGAAAATGTCTTCTGCGTTGACCTCCGCGC
TGCGCCGAGCTGCTGTGCAGCCCAAGGCCGCGCCTTTCAGATGAGTGTCA
GGGTGGCACATGGGTTCGAAGAACTGGGGACGAACAGAGTTTGCGAAAGA
TATCCCAGACCGAAAATGTCTTCTGCGTTGACCTCCGCGCTGCGCCGAGC
TGCTGTGCAGCCCAAGGCCGCGCCTTTCAGGGCTGTTACCCAGATGCGCA
CTATGTCCGCTCAACAGTCGTTTCAGAAAAACTGGCTGTCTGACAAGGGG
GGCTGTTACCCAGATGCGCACTATGTCCGCTCAACAGTCGTTTCAGAAAA
ACTGGCTGTCTGACAAGGGGGCGTGGCCTGTGCTTGGTGTGATATCGGGT
GCCGTTGTGTTCAGTTCATTCTGGGGTATCTCGACCCTCATGACCAACCC
GGATGTGCGCATTAACCGGACGATGCGGACCACTGTCATCCGCCCCGGCA
AAGAGTAAGCGTGGCCTGTGCTTGGTGTGATATCGGGTGCCGTTGTGTTC
AGTTCATTCTGGGGTATCTCGACCCTCATGACCAACCCGGATGTGCGCAT
TAACCGGACGATGCGGACCACTGTCATCCGCCCCGGCAAAGAGTAA back to top
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