mRNA_H-paniculata_contig19571.4959.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19571.4959.1
Unique NamemRNA_H-paniculata_contig19571.4959.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19571.4959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19571contigH-paniculata_contig19571:3885..4430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size547
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929484.3062246-UTR-H-paniculata_contig19571:3884..41181622929484.3062246-UTR-H-paniculata_contig19571:3884..4118Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19571 3885..4118 +
1691480881.7603068-UTR-H-paniculata_contig19571:3884..41181691480881.7603068-UTR-H-paniculata_contig19571:3884..4118Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19571 3885..4118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929484.3208015-CDS-H-paniculata_contig19571:4118..44301622929484.3208015-CDS-H-paniculata_contig19571:4118..4430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19571 4119..4430 +
1691480881.770477-CDS-H-paniculata_contig19571:4118..44301691480881.770477-CDS-H-paniculata_contig19571:4118..4430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19571 4119..4430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19571.4959.1prot_H-paniculata_contig19571.4959.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19571 4119..4430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19571.4959.1

>prot_H-paniculata_contig19571.4959.1 ID=prot_H-paniculata_contig19571.4959.1|Name=mRNA_H-paniculata_contig19571.4959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MPSDSRKTLAERESVNQQLRKQVANWGQRHARNKNGIEKRVGTSSHLAWP
FPCSAIKHKAFFNIDTTVLMPTRTHTHKNKNKTFGSSRIKRRCSPLVLDA
TPSP
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mRNA from alignment at H-paniculata_contig19571:3885..4430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19571.4959.1 ID=mRNA_H-paniculata_contig19571.4959.1|Name=mRNA_H-paniculata_contig19571.4959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=546bp|location=Sequence derived from alignment at H-paniculata_contig19571:3885..4430+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCGTTCTCCCCCGCCGCTGAAACAAGCGTAGTTTCAGTGCCGTACA
CGATCGCTACAACCCCTGTTGTCCCCCAAGACAAGTAGTCGCTTACGGCG
ACATCGTTCCGCGATTCGTGGGCGTCTTCGAGAGTCAACGACGGCAGTGA
GACATTGCTGCATAGACTTCTTCGATACAATGACCGAGCGACTGCGGCAC
CAGGACGGGGTCATCAGACACCCCGTAATGGAACATGCCTAGCGACTCAC
GAAAAACGTTGGCAGAGAGAGAATCAGTCAATCAGCAGTTACGAAAGCAG
GTTGCTAACTGGGGGCAGAGACACGCAAGGAACAAAAACGGAATAGAGAA
GAGAGTCGGGACCTCTTCCCATCTTGCTTGGCCTTTTCCTTGTTCGGCAA
TAAAGCATAAGGCTTTTTTTAATATTGACACTACAGTACTAATGCCGACG
AGAACTCACACACACAAAAACAAAAACAAAACGTTCGGCTCCTCCAGGAT
CAAGCGCAGATGCTCTCCGTTAGTTTTAGATGCTACCCCTTCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig19571:3885..4430+

>mRNA_H-paniculata_contig19571.4959.1 ID=mRNA_H-paniculata_contig19571.4959.1|Name=mRNA_H-paniculata_contig19571.4959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig19571:3885..4430+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTAGCGACTCACGAAAAACGTTGGCAGAGAGAGAATCAGTCAATCA
GCAGTTACGAAAGCAGGTTGCTAACTGGGGGCAGAGACACGCAAGGAACA
AAAACGGAATAGAGAAGAGAGTCGGGACCTCTTCCCATCTTGCTTGGCCT
TTTCCTTGTTCGGCAATAAAGCATAAGGCTTTTTTTAATATTGACACTAC
AGTACTAATGCCGACGAGAACTCACACACACAAAAACAAAAACAAAACGT
TCGGCTCCTCCAGGATCAAGCGCAGATGCTCTCCGTTAGTTTTAGATGCT
ACCCCTTCCCCCATGCCTAGCGACTCACGAAAAACGTTGGCAGAGAGAGA
ATCAGTCAATCAGCAGTTACGAAAGCAGGTTGCTAACTGGGGGCAGAGAC
ACGCAAGGAACAAAAACGGAATAGAGAAGAGAGTCGGGACCTCTTCCCAT
CTTGCTTGGCCTTTTCCTTGTTCGGCAATAAAGCATAAGGCTTTTTTTAA
TATTGACACTACAGTACTAATGCCGACGAGAACTCACACACACAAAAACA
AAAACAAAACGTTCGGCTCCTCCAGGATCAAGCGCAGATGCTCTCCGTTA
GTTTTAGATGCTACCCCTTCCCCC
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