mRNA_H-paniculata_contig1954.4947.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1954.4947.1
Unique NamemRNA_H-paniculata_contig1954.4947.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1954.4947.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 243 bits (621), Expect = 8.880e-74
Identity = 132/386 (34.20%), Postives = 223/386 (57.77%), Query Frame = 1
Query:    1 GLKQSDRNWNNTLGDILVGIGLQHSTTNPCLYFSRKKWGETDI-LVAVYVDDVVIAGRR-EKVDEFKHDISQHFRMIDLGSLSRVFGIEVRRGCPNGTISISQGGYIREVLKRYGSDECRGVPTPVEGKLTILELELADKPPEPRPLGAILSGIGAGVQESSSRRDANSTEYRGMAGSLMYASTGTRPDIAYAVHQAARRMGDPFREDFSTRKRIFRFLSTVPDLAIMFGDKSNGRGLEGFIDANWAEDVEDRKSTTGYVIKLNGGAISWCSRKQQLLVWSSTEAEYAAAGEAGNETVYLRDLLGFIDFGCRGSTALFEDNKSASNLSKGSDTYCRTKHIGVRWHGIREWIREGVLTLKYMHTGDQLADILKKGLSRVKFQRLRTL 1152
            GLKQS R WN+ L + L  IG   + ++PC+Y   +   + DI +VA++VDD+++AG+  EK+ + K  I++ F++ D+G L  + G++V +   +G + I Q  Y   ++K+YG + C+ V TPV+                      + S + + +++S      N  EY+   GSL+Y S+ TRPDI +AV+  A+   +   E ++  KRIFR+L    +  +++ + +N   + GF DA+WA D+ DRKST+GY  ++NG A+SW S+KQ  +  S+ EAEY A   A  E +++R LL  ++        ++EDN+SA  +SK    + R+KHI +++H +R+ + +  LT+ Y  TG  LAD+  KG+ + +F++LR L
Sbjct:   22 GLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEE---DGDIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQ--EDGKVWIGQPTYTASIIKKYGMENCKPVETPVD----------------------LSSKLVSAMEDSELF---NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376          
BLAST of mRNA_H-paniculata_contig1954.4947.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 240 bits (613), Expect = 5.150e-72
Identity = 131/385 (34.03%), Postives = 216/385 (56.10%), Query Frame = 1
Query:    1 GLKQSDRNWNNTLGDILVGIGLQHSTTNPCLYFSRKKWGETDILVAVYVDDVVIAGRREKVDEF-KHDISQHFRMIDLGSLSRVFGIEVRRGCPNGTISISQGGYIREVLKRYGSDECRGVPTPVEGKLTILELELADKPPEPRPLGAILSGIGAGVQESSSRRDANSTEYRGMAGSLMYASTGTRPDIAYAVHQAARRMGDPFREDFSTRKRIFRFLSTVPDLAIMFGDKSNGRGLEGFIDANWAEDVEDRKSTTGYVIKLNGGAISWCSRKQQLLVWSSTEAEYAAAGEAGNETVYLRDLLGFI-DFGCRGSTALFEDNKSASNLSKGSDTYCRTKHIGVRWHGIREWIREGVLTLKYMHTGDQLADILKKGLSRVKFQRLRT 1149
            GLKQS R WN T+ D ++ +G +   ++ C+Y  R   G+  I VA+YVDD+V+A   +++ E  KH +S+ F M DLG L    G+E++    +G +++ Q  +++ +L ++G  + + V TP +  L + +                 +    G Q   + ++     YR + G+LMY    TRPD+A AV   ++   DP    +   KR+ R+L   P   + F  + +  G+ G+ DA+WA D+E R+ST+GY   +NGG ISW S+KQ+ +  SSTEAEY A  EA  E V+L+  L  + +     +  ++EDN+ +  L+K    + RTKHI +R+H +RE + +G + L+Y+ T D LAD++ K ++ V+FQ LR+
Sbjct:   42 GLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK-----------------NMCEGGCQHEDTMKN---VPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQFQVLRS 403          
BLAST of mRNA_H-paniculata_contig1954.4947.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 245 bits (626), Expect = 6.870e-71
Identity = 139/385 (36.10%), Postives = 217/385 (56.36%), Query Frame = 1
Query:    1 GLKQSDRNWNNTLGDILVGIGLQHSTTNPCLYFSRKKWGETDILVAVYVDDVVIAGRREK-VDEFKHDISQHFRMIDLGSLSRVFGIEVRRGCPNGTISISQGGYIREVLKRYGSDECRGVPTPVEGKLTILELELADKPPEPRPLGAILSGIGAGVQESSSRRDANSTEYRGMAGSLMYASTGTRPDIAYAVHQAARRMGDPFREDFSTRKRIFRFLSTVPDLAIMFGDKSNGRGLEGFIDANWAEDVEDRKSTTGYVIKLNGGAISWCSRKQQLLVWSSTEAEYAAAGEAGNETVYLRDLLGFIDFGCRGSTALFEDNKSASNLSKGSDTYCRTKHIGVRWHGIREWIREGVLTLKYMHTGDQLADILKKGLSRVKFQRLRTL 1152
            GLKQS R WN  L + L  +G   +T +PC+Y +    GE   ++AVYVDD+++AG  +K + E K  +++HF + D+G L+   G+++ +    G I + Q  Y   VLK++G +  + V TPV+    +                         V+ S      +  +++   GSL+Y ST TRPDIAYAV+  AR    P ++ ++  KRI R+L    +L +++ +K   +   GF DA+WA D  DRKS +GY+ +++G A+SW S+KQ  +  S+ EAEY A   A  E V++R L+  +     G T +FEDN+SA  ++K S  + R KHI +++H IRE I  GV+ L+Y +T D +AD+  KGLS+ KF +LR +
Sbjct:  388 GLKQSPRCWNIVLDEQLKKMGFVQTTGDPCIYTAAT--GEM-FIIAVYVDDILLAGCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKL-------------------------VKHSDDSEVMDPKQFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLY-NKDKPKECIGFSDADWAGDQNDRKSMSGYMFQISGAAVSWRSKKQTCVALSTAEAEYMALASAAQEAVWMRQLMTDLKVNQAGPTVMFEDNQSAICMAKNSQFHGRAKHIDIKYHFIREKIAGGVIDLQYCNTDDMVADMFTKGLSQEKFVKLREM 743          
BLAST of mRNA_H-paniculata_contig1954.4947.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 246 bits (627), Expect = 5.020e-69
Identity = 132/386 (34.20%), Postives = 223/386 (57.77%), Query Frame = 1
Query:    1 GLKQSDRNWNNTLGDILVGIGLQHSTTNPCLYFSRKKWGETDI-LVAVYVDDVVIAGRR-EKVDEFKHDISQHFRMIDLGSLSRVFGIEVRRGCPNGTISISQGGYIREVLKRYGSDECRGVPTPVEGKLTILELELADKPPEPRPLGAILSGIGAGVQESSSRRDANSTEYRGMAGSLMYASTGTRPDIAYAVHQAARRMGDPFREDFSTRKRIFRFLSTVPDLAIMFGDKSNGRGLEGFIDANWAEDVEDRKSTTGYVIKLNGGAISWCSRKQQLLVWSSTEAEYAAAGEAGNETVYLRDLLGFIDFGCRGSTALFEDNKSASNLSKGSDTYCRTKHIGVRWHGIREWIREGVLTLKYMHTGDQLADILKKGLSRVKFQRLRTL 1152
            GLKQS R WN+ L + L  IG   + ++PC+Y   +   + DI +VA++VDD+++AG+  EK+ + K  I++ F++ D+G L  + G++V +   +  + I Q  Y   ++K+YG + C+ V TPV+                      + S + + +++S      N  EY+   GSL+Y S+ TRPDI +AV+  A+   +P  E ++  KRIFR+L    +  +++ + +N   + GF DA+WA D+ DRKST+GY  ++NG A+SW S+KQ  +  S+ EAEY A   A  E +++R LL  ++        ++EDN+SA  +SK    + R+KHI +++H +R+ + +  LT+ Y  TG  LAD+  KG+ + +F++LR L
Sbjct:  911 GLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEE---DGDIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQ--EDAKVWIGQPTYTASIIKKYGMENCKPVETPVD----------------------LSSKLVSAIEDSELF---NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 1265          
BLAST of mRNA_H-paniculata_contig1954.4947.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 238 bits (606), Expect = 1.080e-68
Identity = 128/385 (33.25%), Postives = 220/385 (57.14%), Query Frame = 1
Query:    1 GLKQSDRNWNNTLGDILVGIGLQHSTTNPCLYFSRKKWGETDILVAVYVDDVVIAGRR-EKVDEFKHDISQHFRMIDLGSLSRVFGIEVRRGCPNGTISISQGGYIREVLKRYGSDECRGVPTPVEGKLTILELELADKPPEPRPLGAILSGIGAGVQESSSRRDANSTEYRGMAGSLMYASTGTRPDIAYAVHQAARRMGDPFREDFSTRKRIFRFLSTVPDLAIMFGDKSNGRGLEGFIDANWAEDVEDRKSTTGYVIKLNGGAISWCSRKQQLLVWSSTEAEYAAAGEAGNETVYLRDLLGFIDFGCRGSTALFEDNKSASNLSKGSDTYCRTKHIGVRWHGIREWIREGVLTLKYMHTGDQLADILKKGLSRVKFQRLRTL 1152
            GLKQS R WN+ L + L  IG   + ++PC+Y   K+      +VA++VDD+++AG+  EK+ + K  I++ F++ D+G L  + G++V +   +  + I Q  Y   ++K+YG + C+ V TPV+                      + S + + +++S      N  E++   GSL+Y S+ TRPDI +AV+  A+   +P  E ++  KRIFR+L    +  +++ + +N   + GF DA+WA D+ DRKST+GY  ++NG A+SW S+KQ  +  S+  AEY A   A  E +++R LL  ++        ++EDN+SA  +SK    + R+KHI ++++ +R+ + +  LT+ Y  TG  LAD+  KG+ + +F++LR L
Sbjct:  297 GLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYV--KEEDGNIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQ--EDAKVWIGQPTYTASIIKKYGMENCKPVETPVD----------------------LSSKLVSAMEDSELF---NKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 651          
BLAST of mRNA_H-paniculata_contig1954.4947.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 238 bits (608), Expect = 1.110e-68
Identity = 136/385 (35.32%), Postives = 208/385 (54.03%), Query Frame = 1
Query:    1 GLKQSDRNWNNTLGDILVGIGLQHSTTNPCLYFSRKKWGETDILVAVYVDDVVIAGRRE-KVDEFKHDISQHFRMIDLGSLSRVFGIEVRRGCPNGTISISQGGYIREVLKRYGSDECRGVPTPVEGKLTILELELADKPPEPRPLGAILSGIGAGVQESSSRRDANSTEYRGMAGSLMYASTGTRPDIAYAVHQAARRMGDPFREDFSTRKRIFRFLSTVPDLAIMFGDKSNGRGLEGFIDANWAEDVEDRKSTTGYVIKLNGGAISWCSRKQQLLVWSSTEAEYAAAGEAGNETVYLRDLLGFIDFGCRGSTALFEDNKSASNLSKGSDTYCRTKHIGVRWHGIREWIREGVLTLKYMHTGDQLADILKKGLSRVKFQRLRTL 1152
            GLKQS R WN+ L   L  +G   +T +PC+Y   K+ G    ++AVYVDD+++AG+ + K++E K  +++ F+M D+G L    G++V     +  I I Q  Y + VL+R+G +  +   TPV     + +                         + S R D     Y+   G L+Y ST TRPDIAYAV   AR   DP  E +   KRI R+L+   D+ +++          G+ DA+WA D++DRKST+GYV +++  AISW S+KQ  +  S+ EAEY A   A  E V+L+ LL  +     G   + EDN++A  ++K +  + R KHI +++H IRE +    + L+Y  T + +ADI  KGLS V+F +LR +
Sbjct:  133 GLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV--KEEGGEIFIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKK-----------------------AADDSQRVD--QVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKM 490          
BLAST of mRNA_H-paniculata_contig1954.4947.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 238 bits (608), Expect = 1.660e-68
Identity = 140/381 (36.75%), Postives = 203/381 (53.28%), Query Frame = 1
Query:    1 GLKQSDRNWNNTLGDILVGIGLQHSTTNPCLYFSRKKWGETDILVAVYVDDVVI-AGRREKVDEFKHDISQHFRMIDLGSLSRVFGIEVRRGCPNGTISISQGGYIREVLKRYGSDECRGVPTPVEGKLTILELELADKPPEPRPLGAILSGIGAGVQESSSRRDANSTEYRGMAGSLMYASTGTRPDIAYAVHQAARRMGDPFREDFSTRKRIFRFLSTVPDLAIMFGDKSNGRGLEGFIDANWAEDVEDRKSTTGYVIKLNGGAISWCSRKQQLLVWSSTEAEYAAAGEAGNETVYLRDLLGFIDFGCRGSTALFEDNKSASNLSKGSDTYCRTKHIGVRWHGIREWIREGVLTLKYMHTGDQLADILKKGLSRVKFQR 1140
            GLKQ+ R W   L      +G +   +N  ++   K      ++VAVYVDD++I +   E V + K D+   F M DLG    + G+E+ R  P+ T+SISQ  Y  E+L+R+G  +C+  PTP+E  +++ +L                           S  + +S  Y+   GSLMY   GT PD+A++V   ++    P  E     KR+ R++    DL ++F    N + +E FIDA+WA+D  +R S TGYV  L G  ISW S+KQ     SSTEAEY AA  A  E ++LR  +  + F     T L+ DN+SA  L K S+ + RTKHI VR+H IRE + +  + L Y+ T DQ+AD L KGLS+VK  +
Sbjct:  353 GLKQASREWYKKLCTEFESMGFRRCNSNHAVFI--KDDNGIRVVVAVYVDDLLIFSSSIEAVKKVKKDLKGKFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLRKL---------------------------SEAEVDSQHYQSAVGSLMYGMIGTHPDVAHSVGVLSQHCATPGEEHEKGNKRVLRYIKGTTDLGLVFIGSGNTK-IEVFIDADWAQDKNNRHSLTGYVCTLAGATISWSSKKQSSTAQSSTEAEYMAATHAAKEALWLRMFMRELGFEQDSPTPLYVDNQSAITLVKNSEFHSRTKHINVRYHFIRENVEDEQIELVYIPTEDQVADALTKGLSKVKLDK 703          
BLAST of mRNA_H-paniculata_contig1954.4947.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 244 bits (622), Expect = 3.030e-68
Identity = 147/396 (37.12%), Postives = 210/396 (53.03%), Query Frame = 1
Query:    1 GLKQSDRNWNNTLGDILVGIGLQHSTTNPCLYFSRKKWGETDILVAVYVDDVVIAGR-REKVDEFKHDISQHFRMIDLGSLSRVFGIEVRRGCPNGTISISQGGYIREVLKRYGSDECRGVPTPVEGKLTILELELADKPPEPRPLGAILSGIGAGVQESSSRRDANSTEYRGMAGSLMYASTGTRPDIAYAVHQAARRMGDPFREDFSTRKRIFRFLSTVPDLAIMF---GDKSNGRGLEGFIDANWAEDVEDRKSTTGYVIKLNGGAISWCSRKQQLLVWSSTEAEYAAAGEAGNETVYLRDLLGFIDF---------GCRGSTALFEDNKSASNLSKGSDTYCRTKHIGVRWHGIREWIREGVLTLKYMHTGDQLADILKKGLSRVKFQRLRT 1149
            GLKQ+ R W   +      +G + S  +  ++   K      +++A+YVDD++IAG  R  +D FK  +S+ F M DLGS   + G+E+ R     T+SISQ  YI ++L+R+G   CR V TP+E  L + +L  A   P+P                           Y+   GSLMYA  G+RPD+A+AV   ++    P  + +    R+FR+L    DL + +    + SNG    G+ DA+WA DV DR+ST+G    L+GGA+SW S+KQQ +  SSTEAEY A   A  E ++LR LL  +           G + +  L  DN+SA  L+K S  + RTKHI VR H IR+ I  G L  +Y+ T DQ+AD+L K L+R K  R  T
Sbjct: 1138 GLKQASREWYKKIRSEFEDLGFERSDADHSIFV--KVENGVILIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNLKLEKLSEATIDPKP---------------------------YQSALGSLMYAMLGSRPDLAFAVGALSKHSATPGPQHWKALMRVFRYLRGSSDLCLSYKPDSEHSNGATPLGYCDADWAGDVNDRRSTSGQAFFLHGGAVSWQSKKQQSIAQSSTEAEYVALASAAKEALWLRALLDDLAIPASISRSSPGSKVTPLLLVDNQSAMALAKNSTFHDRTKHIAVRHHFIRDEIERGTLEAEYVPTDDQVADVLTKALAREKHVRFTT 1504          
BLAST of mRNA_H-paniculata_contig1954.4947.1 vs. uniprot
Match: H3H8W9_PHYRM (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8W9_PHYRM)

HSP 1 Score: 239 bits (610), Expect = 3.890e-68
Identity = 130/385 (33.77%), Postives = 215/385 (55.84%), Query Frame = 1
Query:    1 GLKQSDRNWNNTLGDILVGIGLQHSTTNPCLYFSRKKWGETDILVAVYVDDVVIAGRREKV-DEFKHDISQHFRMIDLGSLSRVFGIEVRRGCPNGTISISQGGYIREVLKRYGSDECRGVPTPVEGKLTILELELADKPPEPRPLGAILSGIGAGVQESSSRRDANSTEYRGMAGSLMYASTGTRPDIAYAVHQAARRMGDPFREDFSTRKRIFRFLSTVPDLAIMFGDKSNGRGLEGFIDANWAEDVEDRKSTTGYVIKLNGGAISWCSRKQQLLVWSSTEAEYAAAGEAGNETVYLRDLLGFI-DFGCRGSTALFEDNKSASNLSKGSDTYCRTKHIGVRWHGIREWIREGVLTLKYMHTGDQLADILKKGLSRVKFQRLRT 1149
            GLKQS R WN T+ D ++ +G +   ++ C+Y  R   G+  I VA+YVDD+V+A   +++ +  KH +S+ F M DLG L    G+E++    +G +++ Q  +++ +L ++G  + + V TP +  L + +                 +    G Q   + ++     YR   G+LMY    TRPD+A AV   ++   DP    +   KR+ R+L   P   + F  + +  G+ G+ DA+WA D+E R+ST+GY   +NGG ISW S+KQ+ +  SSTEAEY A  EA  E V+L+  L  + +     +  ++EDN+ +  L+K    + RTKHI +R+H +RE + +G + L+Y+ T D LAD++ K ++ V+FQ LR+
Sbjct:  443 GLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK-----------------NMCEGGCQHEDTMKN---VPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQFQVLRS 804          
BLAST of mRNA_H-paniculata_contig1954.4947.1 vs. uniprot
Match: A0A8K1FHK1_PYTOL (Uncharacterized protein n=3 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHK1_PYTOL)

HSP 1 Score: 242 bits (617), Expect = 1.340e-67
Identity = 139/386 (36.01%), Postives = 211/386 (54.66%), Query Frame = 1
Query:    1 GLKQSDRNWNNTLGDILVGIGLQHSTTNPCLYFSRKKWGETDILVAVYVDDVVIA-GRREKVDEFKHDISQHFRMIDLGSLSRVFGIEVRRGCPNGTISISQGGYIREVLKRYGSDECRGVPTPVEGKLTILELELADKPPEPRPLGAILSGIGAGVQESSSRRDANSTEYRGMAGSLMYASTGTRPDIAYAVHQAARRMGDPFREDFSTRKRIFRFLSTVPDLAIMFGDKSNGRGLEGFIDANWAEDVEDRKSTTGYVIKLNGGAISWCSRKQQLLVWSSTEAEYAAAGEAGNETVYLRDLLGFI--DFGCRGSTALFEDNKSASNLSKGSDTYCRTKHIGVRWHGIREWIREGVLTLKYMHTGDQLADILKKGLSRVKFQRLRT 1149
            GLKQS R WN T+ + +  IG      + C+Y  R       + V +YVDD+++A   ++ +   K  +S+ F M DLG L    G+EV+R   +G +S+ Q  +++ VL ++G  +C+ V TP +  L + +                 S    G +   + +D     YR   G+LMY   GTRPD+A +V   ++   DP    +   KR+ R+L   P   I F   S+G  L G+ DA+WA D+E R+ST+GYV  LNGG ISW S+KQ+ +  SSTEAEY A  EA  E V+L+  +  +  D G  G+  +FEDN+ A  L+K  + + RTKHI +R+H +RE + +G + L+Y  T + LAD++ K L+  +F  LRT
Sbjct: 1015 GLKQSPRMWNQTIDEFMRKIGFTKCNMDHCVYVKRND--SATMFVVIYVDDLILACNNKDLLAATKRALSERFEMSDLGELKYCLGMEVKRDDKSGDVSMRQTKFVQSVLTKFGMQDCKPVKTPQDPGLKLTK-----------------SMCEGGCKHDETMKD---VPYRNAVGALMYLMVGTRPDLAASVGTLSQFAADPCPTHWQALKRVLRYLQATPMHGICFSGSSDGE-LIGYSDADWAGDIETRRSTSGYVSVLNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKSFMCELGEDSG-NGALTVFEDNQGAIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCPTQEMLADLMTKPLAAAQFDALRT 1376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1954.4947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9M6E1_PARCT8.880e-7434.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB98_PHYRM5.150e-7234.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A498M2F0_LABRO6.870e-7136.10Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7HEL0_PARCT5.020e-6934.20Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9HZ03_PARCT1.080e-6833.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT1.110e-6835.32Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0C9VSW1_SPHS41.660e-6836.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VV58_TRAPU3.030e-6837.12Retrovirus-related Pol polyprotein from transposon... [more]
H3H8W9_PHYRM3.890e-6833.77Integrase catalytic domain-containing protein n=3 ... [more]
A0A8K1FHK1_PYTOL1.340e-6736.01Uncharacterized protein n=3 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1954contigH-paniculata_contig1954:3426..4586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score246.5
Seed ortholog evalue2e-62
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size1161
Cds size1161
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.1956642-CDS-H-paniculata_contig1954:3425..45861622929483.1956642-CDS-H-paniculata_contig1954:3425..4586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1954 3426..4586 +
1691480881.303368-CDS-H-paniculata_contig1954:3425..45861691480881.303368-CDS-H-paniculata_contig1954:3425..4586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1954 3426..4586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1954.4947.1prot_H-paniculata_contig1954.4947.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1954 3426..4586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1954.4947.1

>prot_H-paniculata_contig1954.4947.1 ID=prot_H-paniculata_contig1954.4947.1|Name=mRNA_H-paniculata_contig1954.4947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=387bp
GLKQSDRNWNNTLGDILVGIGLQHSTTNPCLYFSRKKWGETDILVAVYVD
DVVIAGRREKVDEFKHDISQHFRMIDLGSLSRVFGIEVRRGCPNGTISIS
QGGYIREVLKRYGSDECRGVPTPVEGKLTILELELADKPPEPRPLGAILS
GIGAGVQESSSRRDANSTEYRGMAGSLMYASTGTRPDIAYAVHQAARRMG
DPFREDFSTRKRIFRFLSTVPDLAIMFGDKSNGRGLEGFIDANWAEDVED
RKSTTGYVIKLNGGAISWCSRKQQLLVWSSTEAEYAAAGEAGNETVYLRD
LLGFIDFGCRGSTALFEDNKSASNLSKGSDTYCRTKHIGVRWHGIREWIR
EGVLTLKYMHTGDQLADILKKGLSRVKFQRLRTLFM*
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mRNA from alignment at H-paniculata_contig1954:3426..4586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1954.4947.1 ID=mRNA_H-paniculata_contig1954.4947.1|Name=mRNA_H-paniculata_contig1954.4947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1161bp|location=Sequence derived from alignment at H-paniculata_contig1954:3426..4586+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCTCAAGCAGAGCGACCGAAATTGGAATAACACTCTTGGCGATATTCT TGTTGGGATAGGACTCCAACATTCCACTACTAACCCATGCTTGTACTTCT CTCGCAAAAAATGGGGAGAGACAGACATTCTCGTGGCCGTCTATGTTGAC GACGTGGTCATCGCTGGACGTCGTGAGAAAGTAGACGAATTCAAGCACGA CATAAGTCAGCATTTTAGGATGATCGATTTGGGCTCCCTCTCGCGCGTGT TTGGAATAGAAGTACGACGTGGCTGCCCCAATGGTACCATATCAATATCC CAAGGGGGTTACATCCGCGAGGTACTGAAAAGATACGGTTCTGACGAGTG TCGAGGCGTGCCCACCCCTGTAGAGGGAAAATTAACGATTTTGGAACTCG AGTTAGCCGACAAGCCCCCCGAACCGAGACCACTTGGGGCTATACTGTCG GGTATAGGCGCAGGAGTACAAGAAAGCAGTAGTAGAAGAGATGCCAATTC AACTGAATACAGAGGCATGGCAGGATCACTCATGTACGCCTCAACAGGAA CTCGACCTGATATAGCATATGCGGTACACCAAGCAGCACGTCGTATGGGA GACCCATTTCGAGAAGACTTCAGTACACGCAAGCGCATTTTTCGTTTTCT CAGTACCGTGCCTGACCTCGCCATTATGTTCGGCGATAAGAGCAATGGTC GCGGTCTGGAAGGATTCATTGATGCCAACTGGGCGGAAGATGTCGAGGAC CGAAAGTCCACAACAGGATACGTTATTAAACTAAACGGTGGTGCGATAAG TTGGTGCTCTAGGAAGCAACAATTACTCGTGTGGTCCAGTACAGAGGCAG AGTACGCTGCTGCAGGAGAAGCGGGTAATGAGACGGTATATCTTAGGGAT TTACTAGGATTTATAGATTTCGGATGCAGGGGGAGCACGGCATTATTTGA AGACAATAAATCAGCTAGTAATCTCAGTAAGGGATCTGATACATATTGCA GGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGG GAAGGAGTATTGACGTTGAAATATATGCACACCGGAGACCAACTTGCTGA CATTTTAAAGAAAGGACTGAGCAGAGTAAAGTTTCAGAGGCTGAGAACTT TATTCATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1954:3426..4586+

>mRNA_H-paniculata_contig1954.4947.1 ID=mRNA_H-paniculata_contig1954.4947.1|Name=mRNA_H-paniculata_contig1954.4947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2322bp|location=Sequence derived from alignment at H-paniculata_contig1954:3426..4586+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCTCAAGCAGAGCGACCGAAATTGGAATAACACTCTTGGCGATATTCT
TGTTGGGATAGGACTCCAACATTCCACTACTAACCCATGCTTGTACTTCT
CTCGCAAAAAATGGGGAGAGACAGACATTCTCGTGGCCGTCTATGTTGAC
GACGTGGTCATCGCTGGACGTCGTGAGAAAGTAGACGAATTCAAGCACGA
CATAAGTCAGCATTTTAGGATGATCGATTTGGGCTCCCTCTCGCGCGTGT
TTGGAATAGAAGTACGACGTGGCTGCCCCAATGGTACCATATCAATATCC
CAAGGGGGTTACATCCGCGAGGTACTGAAAAGATACGGTTCTGACGAGTG
TCGAGGCGTGCCCACCCCTGTAGAGGGAAAATTAACGATTTTGGAACTCG
AGTTAGCCGACAAGCCCCCCGAACCGAGACCACTTGGGGCTATACTGTCG
GGTATAGGCGCAGGAGTACAAGAAAGCAGTAGTAGAAGAGATGCCAATTC
AACTGAATACAGAGGCATGGCAGGATCACTCATGTACGCCTCAACAGGAA
CTCGACCTGATATAGCATATGCGGTACACCAAGCAGCACGTCGTATGGGA
GACCCATTTCGAGAAGACTTCAGTACACGCAAGCGCATTTTTCGTTTTCT
CAGTACCGTGCCTGACCTCGCCATTATGTTCGGCGATAAGAGCAATGGTC
GCGGTCTGGAAGGATTCATTGATGCCAACTGGGCGGAAGATGTCGAGGAC
CGAAAGTCCACAACAGGATACGTTATTAAACTAAACGGTGGTGCGATAAG
TTGGTGCTCTAGGAAGCAACAATTACTCGTGTGGTCCAGTACAGAGGCAG
AGTACGCTGCTGCAGGAGAAGCGGGTAATGAGACGGTATATCTTAGGGAT
TTACTAGGATTTATAGATTTCGGATGCAGGGGGAGCACGGCATTATTTGA
AGACAATAAATCAGCTAGTAATCTCAGTAAGGGATCTGATACATATTGCA
GGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGG
GAAGGAGTATTGACGTTGAAATATATGCACACCGGAGACCAACTTGCTGA
CATTTTAAAGAAAGGACTGAGCAGAGTAAAGTTTCAGAGGCTGAGAACTT
TATTCATGTGAGGCCTCAAGCAGAGCGACCGAAATTGGAATAACACTCTT
GGCGATATTCTTGTTGGGATAGGACTCCAACATTCCACTACTAACCCATG
CTTGTACTTCTCTCGCAAAAAATGGGGAGAGACAGACATTCTCGTGGCCG
TCTATGTTGACGACGTGGTCATCGCTGGACGTCGTGAGAAAGTAGACGAA
TTCAAGCACGACATAAGTCAGCATTTTAGGATGATCGATTTGGGCTCCCT
CTCGCGCGTGTTTGGAATAGAAGTACGACGTGGCTGCCCCAATGGTACCA
TATCAATATCCCAAGGGGGTTACATCCGCGAGGTACTGAAAAGATACGGT
TCTGACGAGTGTCGAGGCGTGCCCACCCCTGTAGAGGGAAAATTAACGAT
TTTGGAACTCGAGTTAGCCGACAAGCCCCCCGAACCGAGACCACTTGGGG
CTATACTGTCGGGTATAGGCGCAGGAGTACAAGAAAGCAGTAGTAGAAGA
GATGCCAATTCAACTGAATACAGAGGCATGGCAGGATCACTCATGTACGC
CTCAACAGGAACTCGACCTGATATAGCATATGCGGTACACCAAGCAGCAC
GTCGTATGGGAGACCCATTTCGAGAAGACTTCAGTACACGCAAGCGCATT
TTTCGTTTTCTCAGTACCGTGCCTGACCTCGCCATTATGTTCGGCGATAA
GAGCAATGGTCGCGGTCTGGAAGGATTCATTGATGCCAACTGGGCGGAAG
ATGTCGAGGACCGAAAGTCCACAACAGGATACGTTATTAAACTAAACGGT
GGTGCGATAAGTTGGTGCTCTAGGAAGCAACAATTACTCGTGTGGTCCAG
TACAGAGGCAGAGTACGCTGCTGCAGGAGAAGCGGGTAATGAGACGGTAT
ATCTTAGGGATTTACTAGGATTTATAGATTTCGGATGCAGGGGGAGCACG
GCATTATTTGAAGACAATAAATCAGCTAGTAATCTCAGTAAGGGATCTGA
TACATATTGCAGGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAG
AGTGGATTCGGGAAGGAGTATTGACGTTGAAATATATGCACACCGGAGAC
CAACTTGCTGACATTTTAAAGAAAGGACTGAGCAGAGTAAAGTTTCAGAG
GCTGAGAACTTTATTCATGTGA
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