mRNA_H-paniculata_contig19538.4946.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19538.4946.1
Unique NamemRNA_H-paniculata_contig19538.4946.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19538.4946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19538contigH-paniculata_contig19538:2206..3009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size247
Cds size138
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19538.4946.1prot_H-paniculata_contig19538.4946.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19538 2206..2900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.117115-CDS-H-paniculata_contig19538:2205..22331622929483.117115-CDS-H-paniculata_contig19538:2205..2233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19538 2206..2233 +
1691480881.2746074-CDS-H-paniculata_contig19538:2205..22331691480881.2746074-CDS-H-paniculata_contig19538:2205..2233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19538 2206..2233 +
1622929483.1309066-CDS-H-paniculata_contig19538:2790..29001622929483.1309066-CDS-H-paniculata_contig19538:2790..2900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19538 2791..2900 +
1691480881.2832568-CDS-H-paniculata_contig19538:2790..29001691480881.2832568-CDS-H-paniculata_contig19538:2790..2900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19538 2791..2900 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929483.1510026-UTR-H-paniculata_contig19538:2900..30091622929483.1510026-UTR-H-paniculata_contig19538:2900..3009Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19538 2901..3009 +
1691480881.2920802-UTR-H-paniculata_contig19538:2900..30091691480881.2920802-UTR-H-paniculata_contig19538:2900..3009Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19538 2901..3009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19538.4946.1

>prot_H-paniculata_contig19538.4946.1 ID=prot_H-paniculata_contig19538.4946.1|Name=mRNA_H-paniculata_contig19538.4946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
PISINRDNIVPAIGQHTHAACDFTTETSPISCLNSLYMGVANLAT*
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mRNA from alignment at H-paniculata_contig19538:2206..3009+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19538.4946.1 ID=mRNA_H-paniculata_contig19538.4946.1|Name=mRNA_H-paniculata_contig19538.4946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=804bp|location=Sequence derived from alignment at H-paniculata_contig19538:2206..3009+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGATATCGATTAATCGCGACAATATCGGTATGTTGCGATCTACGGCCTA
CCTATGTATCGTGTATCAGTTGTTTCTGCTGCGATACACAAGCCTAGTAT
CCGTGCTTCCTACATGCTCTTCAGAATGAGAAGAGTTCGAAACCGCATTC
CCTTACATTTTGATTCGTATTATAGCATAATTTTCCTCTCACTCATCGCT
CACCATACATAGAGAAATGAAACTACTTGTGAACACAATGAAGACAAGAA
TTAACAGTCTGTTTTGGTCAGGTTTGTTACATTAATGCCGTTACACGTGT
ACTAAGGTCCTTGTTTCTCATACATTCGGATCGTGATGATCCATACAGTA
CCCCCTGTCTTAGTTTGGTCGGTTTGTGGATCAGTAATTCAGCAGCATTC
AAAATACCGACAACATATCCTCCGTTTCGTTTGAAAGCTATTGTTATGAT
TTCTACTTTCATTTTCTTGTACTTCTTACTTGCTTCAGTGCTTCCCCCCC
CCCCCGCTCCAAAAACGACAAACGTACGCCGCCCCCCGCCGTCGCCCCCG
CCGCCCCCCCACGACGCCGCCTTCCTCTCCCCTAGTTCCAGCTATCGGAC
AACACACTCACGCTGCATGTGACTTCACCACGGAGACGTCGCCAATCTCC
TGCTTGAACAGCTTGTACATGGGAGTGGCCAACTTGGCAACATAGTTATC
GTAGCTAAAGAGGTGTAGGCTGCCCACAATGAGAGATGCGAATCCTTGAA
GGAGGAAGGCGTTGTTCGGGTTGCCGAAGAAGTTGCTCTTTTTTTAAGGG
GGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig19538:2206..3009+

>mRNA_H-paniculata_contig19538.4946.1 ID=mRNA_H-paniculata_contig19538.4946.1|Name=mRNA_H-paniculata_contig19538.4946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig19538:2206..3009+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGATATCGATTAATCGCGACAATATCGCCGATATCGATTAATCGCGACA
ATATCGTTCCAGCTATCGGACAACACACTCACGCTGCATGTGACTTCACC
ACGGAGACGTCGCCAATCTCCTGCTTGAACAGCTTGTACATGGGAGTGGC
CAACTTGGCAACATAGTTCCAGCTATCGGACAACACACTCACGCTGCATG
TGACTTCACCACGGAGACGTCGCCAATCTCCTGCTTGAACAGCTTGTACA
TGGGAGTGGCCAACTTGGCAACATAG
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