mRNA_H-paniculata_contig1950.4936.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1950.4936.1 vs. uniprot
Match: D8LIP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP0_ECTSI) HSP 1 Score: 187 bits (475), Expect = 1.290e-54 Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 1
Query: 1 DGAVVPGGGAFEVAASLSLQNFKTTVKGRAKLGIEAYAEAMLVVPKTLAENSGFDVQESVIKLVDEHMESSAPVGLDLMTGEAMLPEQEGVWDNYCVKRQSLHLSTV 321
D AVVPG GAFEVAA+LSLQ FKTTVKGRAKLGIEA+AEA+++VPKTLAENSGFDVQ+SVIKLVDEH+ES A VGLDLMTGE MLPEQEGVWDNYCVKRQSLHLSTV
Sbjct: 407 DQAVVPGAGAFEVAANLSLQKFKTTVKGRAKLGIEAFAEALMIVPKTLAENSGFDVQDSVIKLVDEHVESGAAVGLDLMTGEPMLPEQEGVWDNYCVKRQSLHLSTV 513
BLAST of mRNA_H-paniculata_contig1950.4936.1 vs. uniprot
Match: A0A2P4XTS7_9STRA (T-complex protein 1, zeta subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XTS7_9STRA) HSP 1 Score: 142 bits (357), Expect = 7.740e-41 Identity = 67/106 (63.21%), Postives = 86/106 (81.13%), Query Frame = 1
Query: 1 DGAVVPGGGAFEVAASLSLQNFKTTVKGRAKLGIEAYAEAMLVVPKTLAENSGFDVQESVIKLVDEHMESSAPVGLDLMTGEAMLPEQEGVWDNYCVKRQSLHLST 318
D VVPG AFE+AA+ +L FK TVKGRAKLG++A+A+A+LV+PK LAENSG DVQ+++I + +EH S PVG+DL +GE MLPEQEG+WDNY VKRQ +HL+T
Sbjct: 38 DKGVVPGAAAFELAANEALNKFKGTVKGRAKLGVQAFADALLVIPKVLAENSGLDVQDTLIAVQEEHQNSGMPVGIDLFSGEPMLPEQEGIWDNYRVKRQFIHLAT 143
BLAST of mRNA_H-paniculata_contig1950.4936.1 vs. uniprot
Match: A0A7S2MSB4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSB4_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.760e-40 Identity = 70/107 (65.42%), Postives = 92/107 (85.98%), Query Frame = 1
Query: 1 DGAVVPGGGAFEVAASLSLQNFKTTVKGRAKLGIEAYAEAMLVVPKTLAENSGFDVQESVIKLVDEHMESSAPVGLDLMTGEAMLPEQEGVWDNYCVKRQSLHLSTV 321
D VVPGGGAFE AA +SL+ FK TVKG+AK+G++A+A+++L+ PK LAENSGFDVQ+++I+L +EH++S A VGLDL+TG+ MLPE EGVWDNY VKRQ +HLST+
Sbjct: 414 DSGVVPGGGAFETAAYVSLRAFKDTVKGKAKIGVQAFADSLLITPKVLAENSGFDVQDTIIQLEEEHIKSGAAVGLDLITGDVMLPEAEGVWDNYRVKRQYIHLSTM 520
BLAST of mRNA_H-paniculata_contig1950.4936.1 vs. uniprot
Match: A0A7S2V196_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V196_9STRA) HSP 1 Score: 144 bits (362), Expect = 3.260e-38 Identity = 73/110 (66.36%), Postives = 90/110 (81.82%), Query Frame = 1
Query: 1 DGAVVPGGGAFEVAASLSLQNFKTTVKGRAKLGIEAYAEAMLVVPKTLAENSGFDVQESVIKLVDEHMES---SAPVGLDLMTGEAMLPEQEGVWDNYCVKRQSLHLSTV 321
DG VPGGGA EVAA+ L +K V+G+AKLGI+A+A+A+LV+PKTLAENSGFDVQ+S+IK+ DE ++ + VGLDLMTGE MLP+QEG+WDNY VKRQ LHLSTV
Sbjct: 405 DGHAVPGGGALEVAAAADLFEYKHAVEGKAKLGIQAFADALLVIPKTLAENSGFDVQDSLIKVQDEQRKAGGGAVAVGLDLMTGEPMLPDQEGIWDNYRVKRQFLHLSTV 514
BLAST of mRNA_H-paniculata_contig1950.4936.1 vs. uniprot
Match: A0A7R9YD60_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD60_9STRA) HSP 1 Score: 142 bits (359), Expect = 9.820e-38 Identity = 67/108 (62.04%), Postives = 88/108 (81.48%), Query Frame = 1
Query: 1 DGAVVPGGGAFEVAASLSLQNFKTT-VKGRAKLGIEAYAEAMLVVPKTLAENSGFDVQESVIKLVDEHMESSAPVGLDLMTGEAMLPEQEGVWDNYCVKRQSLHLSTV 321
DGAV+PGGGAFE+AA+ SL FK ++GRAK+G++A+A+A+L++PK LAENSGFDVQE +I+L +EH VGLD+ TGE MLP+QEG+WD+Y VKRQ LHL T+
Sbjct: 418 DGAVIPGGGAFEIAAAESLMRFKRDEIRGRAKIGVQAFADALLIIPKVLAENSGFDVQECLIQLEEEHRNRGVAVGLDVNTGEPMLPDQEGIWDSYSVKRQCLHLCTI 525
BLAST of mRNA_H-paniculata_contig1950.4936.1 vs. uniprot
Match: A0A4D9CV25_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV25_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.620e-37 Identity = 70/107 (65.42%), Postives = 87/107 (81.31%), Query Frame = 1
Query: 1 DGAVVPGGGAFEVAASLSLQNFKTTVKGRAKLGIEAYAEAMLVVPKTLAENSGFDVQESVIKLVDEHMESSAPVGLDLMTGEAMLPEQEGVWDNYCVKRQSLHLSTV 321
D A+VPGGG+FEVAAS LQ +K TV G+ KLG+ A+AEA+LVVPKTLAENSGFDVQ+++I L++EH ++ VGLD+ TGE M P GVWDNY VKRQSLHL+T+
Sbjct: 406 DKALVPGGGSFEVAASHMLQAYKETVSGKPKLGVVAFAEALLVVPKTLAENSGFDVQDTLIALLEEHAKTGIAVGLDVTTGEGMAPAMVGVWDNYRVKRQSLHLATI 512
BLAST of mRNA_H-paniculata_contig1950.4936.1 vs. uniprot
Match: A7RLY5_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RLY5_NEMVE) HSP 1 Score: 140 bits (354), Expect = 4.040e-37 Identity = 66/107 (61.68%), Postives = 88/107 (82.24%), Query Frame = 1
Query: 1 DGAVVPGGGAFEVAASLSLQNFKTTVKGRAKLGIEAYAEAMLVVPKTLAENSGFDVQESVIKLVDEHMESSAPVGLDLMTGEAMLPEQEGVWDNYCVKRQSLHLSTV 321
DG VVPG GA E+A +L +FK TVKGRA+LG++A+A+A+LV+PKTLA+NSGFD QE+++KL++E+ +S+ PVG+DL +GEAM+P GVWDNY VKRQ LH TV
Sbjct: 406 DGCVVPGAGALEIAIHAALIDFKKTVKGRARLGVQAFADALLVIPKTLAQNSGFDPQETMVKLLEEYADSNTPVGVDLSSGEAMIPADAGVWDNYRVKRQLLHSCTV 512
BLAST of mRNA_H-paniculata_contig1950.4936.1 vs. uniprot
Match: A0A6V1PFD7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PFD7_HETAK) HSP 1 Score: 140 bits (354), Expect = 4.400e-37 Identity = 74/110 (67.27%), Postives = 90/110 (81.82%), Query Frame = 1
Query: 1 DGAVVPGGGAFEVAASLSLQNFKTT-VKGRAKLGIEAYAEAMLVVPKTLAENSGFDVQESVIKLVDEHMES--SAPVGLDLMTGEAMLPEQEGVWDNYCVKRQSLHLSTV 321
DGAVVPG GAFEVAA+ LQ + VKGRAKLG+ AYA+A+LVVPKTLAENSG DVQ+++I++ D ++ +APVGLDL+TGE M P+QEG+WDNY VKRQ LHLSTV
Sbjct: 404 DGAVVPGAGAFEVAAAADLQAYAAAEVKGRAKLGVAAYADALLVVPKTLAENSGLDVQDALIQMQDALRDNGGAAPVGLDLVTGEPMAPDQEGIWDNYRVKRQFLHLSTV 513
BLAST of mRNA_H-paniculata_contig1950.4936.1 vs. uniprot
Match: A0A7S2BN96_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BN96_9STRA) HSP 1 Score: 140 bits (354), Expect = 4.440e-37 Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 1
Query: 1 DGAVVPGGGAFEVAASLSLQNFKTTVKGRAKLGIEAYAEAMLVVPKTLAENSGFDVQESVIKLVDEHMESSAPVGLDLMTGEAMLPEQEGVWDNYCVKRQSLHLST 318
D AVV G GAFE AA SL FK TV G+AKLG++AYA+AML++PK L+ENSGFDVQ+S+I L +EH ++ A +GLDL+TGE +LP EG+WDNY VKRQ +HLST
Sbjct: 407 DKAVVAGAGAFETAAYTSLMAFKGTVSGKAKLGVQAYADAMLIIPKVLSENSGFDVQDSIIALQEEHEKAGAAIGLDLVTGECILPAAEGIWDNYRVKRQYIHLST 512
BLAST of mRNA_H-paniculata_contig1950.4936.1 vs. uniprot
Match: A0A7S2WV07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV07_9STRA) HSP 1 Score: 140 bits (353), Expect = 6.110e-37 Identity = 69/107 (64.49%), Postives = 88/107 (82.24%), Query Frame = 1
Query: 1 DGAVVPGGGAFEVAASLSLQNFKTTVKGRAKLGIEAYAEAMLVVPKTLAENSGFDVQESVIKLVDEHMESSAPVGLDLMTGEAMLPEQEGVWDNYCVKRQSLHLSTV 321
D AVV G GA+E AA LSLQ FK++V G+AKLG+EA+A AMLV+PK LAENSGFD+Q+S+I + +E +S A VGLD++TG+ MLPE EG++DNY VKRQ +HLSTV
Sbjct: 407 DEAVVAGAGAYENAAYLSLQQFKSSVSGKAKLGVEAFANAMLVIPKVLAENSGFDIQDSIISMQEEREKSGAAVGLDVVTGDVMLPEVEGIYDNYRVKRQCIHLSTV 513 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1950.4936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1950.4936.1 >prot_H-paniculata_contig1950.4936.1 ID=prot_H-paniculata_contig1950.4936.1|Name=mRNA_H-paniculata_contig1950.4936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp DGAVVPGGGAFEVAASLSLQNFKTTVKGRAKLGIEAYAEAMLVVPKTLAEback to top mRNA from alignment at H-paniculata_contig1950:20745..22592- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1950.4936.1 ID=mRNA_H-paniculata_contig1950.4936.1|Name=mRNA_H-paniculata_contig1950.4936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1848bp|location=Sequence derived from alignment at H-paniculata_contig1950:20745..22592- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1950:20745..22592- >mRNA_H-paniculata_contig1950.4936.1 ID=mRNA_H-paniculata_contig1950.4936.1|Name=mRNA_H-paniculata_contig1950.4936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig1950:20745..22592- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |