mRNA_H-paniculata_contig1944.4916.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1944.4916.1
Unique NamemRNA_H-paniculata_contig1944.4916.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1944.4916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1944contigH-paniculata_contig1944:18624..19422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size748
Cds size615
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1944.4916.1prot_H-paniculata_contig1944.4916.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1944 18757..19422 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929477.9418602-UTR-H-paniculata_contig1944:18623..187561622929477.9418602-UTR-H-paniculata_contig1944:18623..18756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1944 18624..18756 +
1691480879.030597-UTR-H-paniculata_contig1944:18623..187561691480879.030597-UTR-H-paniculata_contig1944:18623..18756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1944 18624..18756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929477.973773-CDS-H-paniculata_contig1944:18756..192131622929477.973773-CDS-H-paniculata_contig1944:18756..19213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1944 18757..19213 +
1691480879.0391192-CDS-H-paniculata_contig1944:18756..192131691480879.0391192-CDS-H-paniculata_contig1944:18756..19213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1944 18757..19213 +
1622929478.0163481-CDS-H-paniculata_contig1944:19264..194221622929478.0163481-CDS-H-paniculata_contig1944:19264..19422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1944 19265..19422 +
1691480879.0517964-CDS-H-paniculata_contig1944:19264..194221691480879.0517964-CDS-H-paniculata_contig1944:19264..19422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1944 19265..19422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1944.4916.1

>prot_H-paniculata_contig1944.4916.1 ID=prot_H-paniculata_contig1944.4916.1|Name=mRNA_H-paniculata_contig1944.4916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MSYRWRDCALFQVIPHHFRDHGEDGERASHRGTTRGTTEGDSWQRAGCTG
YAESRRERLRYAEGRQARKILPRLVFHMWEGRAQTNGGAGVAAAARRRTR
DRRQTRPARLLSHRARDRYRVVRNRRVIPSTRDRRWHGAQEARVRRCAVT
GGTVVHRRWTGFLELVVETTVSQQAGPSIPPPKLQSVTVKTPPEPSGTYS
SSMTT
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mRNA from alignment at H-paniculata_contig1944:18624..19422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1944.4916.1 ID=mRNA_H-paniculata_contig1944.4916.1|Name=mRNA_H-paniculata_contig1944.4916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=799bp|location=Sequence derived from alignment at H-paniculata_contig1944:18624..19422+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAATTGGCAATGCCTAGACAAAAATAACCTGATAGATGTGGTGATGAC
AAATGGAGACTGGGCAGTTGGCCCGGGAGAGATAGTGGTGAGCATGCTCT
TGGCCGGCCTCTGACTGCCAGAGTACAGCGAAGATGTCATACAGATGGCG
AGACTGCGCGCTGTTTCAAGTGATCCCCCACCATTTTCGAGATCATGGAG
AAGATGGAGAGAGAGCAAGCCATCGTGGAACGACGCGCGGCACGACGGAA
GGCGACAGCTGGCAGAGAGCAGGTTGTACCGGTTACGCAGAAAGTCGGAG
AGAGAGGTTGCGCTACGCAGAAGGTCGCCAAGCAAGAAAAATTCTTCCCC
GGCTCGTGTTTCATATGTGGGAAGGCAGGGCACAAACAAACGGGGGTGCA
GGAGTGGCGGCGGCGGCCAGACGGCGAACCAGGGACAGACGACAGACACG
TCCAGCCAGGCTTCTATCTCATCGCGCCAGGGACCGGTACCGGGTGGTCA
GAAATCGACGGGTCATACCCTCGACAAGGGATCGACGGTGGCACGGCGCA
CAAGAAGCCAGGGTAAGGCGTTGCGCGGTGACGGGGGGAAGCGACCATCA
TGAAAAATTGAGGAATTGTCGTCAAGATCCAGGTGCCTAAGCGGTTGTTC
ATCGACGGTGGACTGGGTTTCTAGAATTGGTCGTGGAAACTACGGTCTCG
CAGCAGGCGGGACCAAGCATCCCGCCCCCAAAACTGCAATCGGTGACTGT
GAAGACGCCGCCGGAGCCGAGTGGCACCTACAGCTCTAGTATGACCACT
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Coding sequence (CDS) from alignment at H-paniculata_contig1944:18624..19422+

>mRNA_H-paniculata_contig1944.4916.1 ID=mRNA_H-paniculata_contig1944.4916.1|Name=mRNA_H-paniculata_contig1944.4916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig1944:18624..19422+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATACAGATGGCGAGACTGCGCGCTGTTTCAAGTGATCCCCCACCA
TTTTCGAGATCATGGAGAAGATGGAGAGAGAGCAAGCCATCGTGGAACGA
CGCGCGGCACGACGGAAGGCGACAGCTGGCAGAGAGCAGGTTGTACCGGT
TACGCAGAAAGTCGGAGAGAGAGGTTGCGCTACGCAGAAGGTCGCCAAGC
AAGAAAAATTCTTCCCCGGCTCGTGTTTCATATGTGGGAAGGCAGGGCAC
AAACAAACGGGGGTGCAGGAGTGGCGGCGGCGGCCAGACGGCGAACCAGG
GACAGACGACAGACACGTCCAGCCAGGCTTCTATCTCATCGCGCCAGGGA
CCGGTACCGGGTGGTCAGAAATCGACGGGTCATACCCTCGACAAGGGATC
GACGGTGGCACGGCGCACAAGAAGCCAGGGTAAGGCGTTGCGCGGTGACG
GGGGGAAATGTCATACAGATGGCGAGACTGCGCGCTGTTTCAAGTGATCC
CCCACCATTTTCGAGATCATGGAGAAGATGGAGAGAGAGCAAGCCATCGT
GGAACGACGCGCGGCACGACGGAAGGCGACAGCTGGCAGAGAGCAGGTTG
TACCGGTTACGCAGAAAGTCGGAGAGAGAGGTTGCGCTACGCAGAAGGTC
GCCAAGCAAGAAAAATTCTTCCCCGGCTCGTGTTTCATATGTGGGAAGGC
AGGGCACAAACAAACGGGGGTGCAGGAGTGGCGGCGGCGGCCAGACGGCG
AACCAGGGACAGACGACAGACACGTCCAGCCAGGCTTCTATCTCATCGCG
CCAGGGACCGGTACCGGGTGGTCAGAAATCGACGGGTCATACCCTCGACA
AGGGATCGACGGTGGCACGGCGCACAAGAAGCCAGGGTAAGGCGTTGCGC
GGTGACGGGGGGAACGGTTGTTCATCGACGGTGGACTGGGTTTCTAGAAT
TGGTCGTGGAAACTACGGTCTCGCAGCAGGCGGGACCAAGCATCCCGCCC
CCAAAACTGCAATCGGTGACTGTGAAGACGCCGCCGGAGCCGAGTGGCAC
CTACAGCTCTAGTATGACCACTCGGTTGTTCATCGACGGTGGACTGGGTT
TCTAGAATTGGTCGTGGAAACTACGGTCTCGCAGCAGGCGGGACCAAGCA
TCCCGCCCCCAAAACTGCAATCGGTGACTGTGAAGACGCCGCCGGAGCCG
AGTGGCACCTACAGCTCTAGTATGACCACT
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