mRNA_H-paniculata_contig19404.4906.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19404.4906.1
Unique NamemRNA_H-paniculata_contig19404.4906.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19404.4906.1 vs. uniprot
Match: A0A0H5B939_9PHAE (Photosystem I P700 apoprotein A2 (Fragment) n=1 Tax=Ralfsia verrucosa TaxID=371971 RepID=A0A0H5B939_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.240e-19
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:  130 AFMAEEFTIQAALYTHHQYIAGFLMMGAFAHGAIFFVRDYDPE 258
            AFMA++FT QAALYTHHQYIAGFLM+GAFAHGAIFFVRDYDPE
Sbjct:   38 AFMAKDFTTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPE 80
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BLAST of mRNA_H-paniculata_contig19404.4906.1 vs. uniprot
Match: A0A2H5PG69_CITUN (Uncharacterized protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5PG69_CITUN)

HSP 1 Score: 80.5 bits (197), Expect = 3.060e-18
Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:  130 AFMAEEFTIQAALYTHHQYIAGFLMMGAFAHGAIFFVRDYDPEK 261
            AF+A++FT QAALYTHHQYIAGF+M GAFAHGAIFF+RDY+PE+
Sbjct:    8 AFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPEQ 51
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BLAST of mRNA_H-paniculata_contig19404.4906.1 vs. uniprot
Match: A0A830DGM8_9LAMI (Photosystem i p700 chlorophyll a apoprotein a2 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830DGM8_9LAMI)

HSP 1 Score: 80.5 bits (197), Expect = 3.400e-18
Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:  130 AFMAEEFTIQAALYTHHQYIAGFLMMGAFAHGAIFFVRDYDPEK 261
            AF+A++FT QAALYTHHQYIAGF+M GAFAHGAIFF+RDY+PE+
Sbjct:    8 AFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPEQ 51
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BLAST of mRNA_H-paniculata_contig19404.4906.1 vs. uniprot
Match: A0A7T7DA50_9STRA (Photosystem I (Fragment) n=2 Tax=Phaeosacciales TaxID=2797541 RepID=A0A7T7DA50_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.530e-18
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:  130 AFMAEEFTIQAALYTHHQYIAGFLMMGAFAHGAIFFVRDYDPE 258
            AFMA++FT QAALYTHHQYIAGFLM+GAFAHGAIFFVRDYDPE
Sbjct:   32 AFMAKDFTTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPE 74
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BLAST of mRNA_H-paniculata_contig19404.4906.1 vs. uniprot
Match: A0A2L1DF55_9FLOR (PSI P700 apoprotein A2 (Fragment) n=1 Tax=Atractophora hypnoides TaxID=173450 RepID=A0A2L1DF55_9FLOR)

HSP 1 Score: 85.5 bits (210), Expect = 4.190e-18
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  130 AFMAEEFTIQAALYTHHQYIAGFLMMGAFAHGAIFFVRDYDPEK 261
            AFMA++FT QAALYTHHQYIAGFLM+G+FAHGAIFF+RDYDPEK
Sbjct:  193 AFMAKDFTTQAALYTHHQYIAGFLMVGSFAHGAIFFIRDYDPEK 236
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BLAST of mRNA_H-paniculata_contig19404.4906.1 vs. uniprot
Match: A0A7T7IGN1_9STRA (PsaB (Fragment) n=1 Tax=Phaeothamnion wetherbeei TaxID=2569897 RepID=A0A7T7IGN1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.100e-18
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:  130 AFMAEEFTIQAALYTHHQYIAGFLMMGAFAHGAIFFVRDYDPE 258
            AFMA++FT QAALYTHHQYIAGFLM+GAFAHGAIFFVRDYDPE
Sbjct:  170 AFMAKDFTTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPE 212
[Close]
BLAST of mRNA_H-paniculata_contig19404.4906.1 vs. uniprot
Match: A0A0A7M1C6_9STRA (Photosystem I P700 apoprotein A2 (Fragment) n=1 Tax=Ankylochrysis lutea TaxID=296670 RepID=A0A0A7M1C6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.990e-18
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:  109 MFLEEAGAFMAEEFTIQAALYTHHQYIAGFLMMGAFAHGAIFFVRDYDPE 258
            M+   A AF+A++F  QAALYTHHQYIAGFLM+GAFAHGAIFFVRDYDPE
Sbjct:   62 MYALPAYAFIAKDFVTQAALYTHHQYIAGFLMLGAFAHGAIFFVRDYDPE 111
[Close]
BLAST of mRNA_H-paniculata_contig19404.4906.1 vs. uniprot
Match: A0A7T7IGN4_9STRA (PsaB (Fragment) n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7T7IGN4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.000e-18
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:  130 AFMAEEFTIQAALYTHHQYIAGFLMMGAFAHGAIFFVRDYDPE 258
            AFMA++FT QAALYTHHQYIAGFLM+GAFAHGAIFFVRDYDP+
Sbjct:   19 AFMAKDFTTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPK 61
[Close]
BLAST of mRNA_H-paniculata_contig19404.4906.1 vs. uniprot
Match: Q6TNX8_RHOVL (Photosystem I (Fragment) n=2 Tax=Rhodophyta TaxID=2763 RepID=Q6TNX8_RHOVL)

HSP 1 Score: 85.9 bits (211), Expect = 9.500e-18
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  130 AFMAEEFTIQAALYTHHQYIAGFLMMGAFAHGAIFFVRDYDPEK 261
            AFMA++FT QAALYTHHQYIAGFLM+GAFAHGAIFFVRDYDPE+
Sbjct:  193 AFMAQDFTTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPEQ 236
[Close]
BLAST of mRNA_H-paniculata_contig19404.4906.1 vs. uniprot
Match: A0A1G4NSP4_9FLOR (Photosystem I P700 chlorophyll a apoprotein A2 n=2 Tax=Dichotomaria marginata TaxID=268567 RepID=A0A1G4NSP4_9FLOR)

HSP 1 Score: 85.9 bits (211), Expect = 1.260e-17
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:  130 AFMAEEFTIQAALYTHHQYIAGFLMMGAFAHGAIFFVRDYDPEK 261
            AFMA++FT QAALYTHHQYIAGFLM+GAFAHGAIFFVRDYDP+K
Sbjct:  359 AFMAKDFTTQAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPQK 402
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19404.4906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0H5B939_9PHAE5.240e-1990.70Photosystem I P700 apoprotein A2 (Fragment) n=1 Ta... [more]
A0A2H5PG69_CITUN3.060e-1879.55Uncharacterized protein n=1 Tax=Citrus unshiu TaxI... [more]
A0A830DGM8_9LAMI3.400e-1879.55Photosystem i p700 chlorophyll a apoprotein a2 n=1... [more]
A0A7T7DA50_9STRA3.530e-1890.70Photosystem I (Fragment) n=2 Tax=Phaeosacciales Ta... [more]
A0A2L1DF55_9FLOR4.190e-1886.36PSI P700 apoprotein A2 (Fragment) n=1 Tax=Atractop... [more]
A0A7T7IGN1_9STRA6.100e-1890.70PsaB (Fragment) n=1 Tax=Phaeothamnion wetherbeei T... [more]
A0A0A7M1C6_9STRA7.990e-1878.00Photosystem I P700 apoprotein A2 (Fragment) n=1 Ta... [more]
A0A7T7IGN4_9STRA8.000e-1888.37PsaB (Fragment) n=2 Tax=Ochrophyta TaxID=2696291 R... [more]
Q6TNX8_RHOVL9.500e-1888.64Photosystem I (Fragment) n=2 Tax=Rhodophyta TaxID=... [more]
A0A1G4NSP4_9FLOR1.260e-1788.64Photosystem I P700 chlorophyll a apoprotein A2 n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19404contigH-paniculata_contig19404:629..895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D1J7A4
Preferred namepsaB
KEGG koko:K02690
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0016168,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0055035,GO:0097159,GO:1901363
EggNOG free text desc.chlorophyll binding
EggNOG OGs28JJ8@1,2QRYE@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size268
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929476.9762828-CDS-H-paniculata_contig19404:628..8951622929476.9762828-CDS-H-paniculata_contig19404:628..895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19404 629..895 +
1691480878.5691533-CDS-H-paniculata_contig19404:628..8951691480878.5691533-CDS-H-paniculata_contig19404:628..895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19404 629..895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19404.4906.1prot_H-paniculata_contig19404.4906.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19404 629..895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19404.4906.1

>prot_H-paniculata_contig19404.4906.1 ID=prot_H-paniculata_contig19404.4906.1|Name=mRNA_H-paniculata_contig19404.4906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
VRSVTEFGLKEAKEVVENTPRVLKEGLSKAAAEEAKMFLEEAGAFMAEEF
TIQAALYTHHQYIAGFLMMGAFAHGAIFFVRDYDPEKK*
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mRNA from alignment at H-paniculata_contig19404:629..895+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19404.4906.1 ID=mRNA_H-paniculata_contig19404.4906.1|Name=mRNA_H-paniculata_contig19404.4906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig19404:629..895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAGATCTGTAACTGAATTTGGATTAAAAGAAGCAAAAGAAGTTGTTGA
AAATACCCCAAGAGTTTTAAAAGAAGGATTAAGTAAAGCCGCTGCTGAAG
AAGCAAAAATGTTTTTAGAAGAAGCAGGTGCTTTTATGGCAGAAGAGTTT
ACAATTCAAGCCGCTTTATATACTCATCACCAATATATAGCAGGATTTTT
AATGATGGGAGCATTTGCTCATGGTGCAATATTTTTTGTTCGAGATTATG
ATCCAGAAAAAAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19404:629..895+

>mRNA_H-paniculata_contig19404.4906.1 ID=mRNA_H-paniculata_contig19404.4906.1|Name=mRNA_H-paniculata_contig19404.4906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig19404:629..895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAGATCTGTAACTGAATTTGGATTAAAAGAAGCAAAAGAAGTTGTTGA
AAATACCCCAAGAGTTTTAAAAGAAGGATTAAGTAAAGCCGCTGCTGAAG
AAGCAAAAATGTTTTTAGAAGAAGCAGGTGCTTTTATGGCAGAAGAGTTT
ACAATTCAAGCCGCTTTATATACTCATCACCAATATATAGCAGGATTTTT
AATGATGGGAGCATTTGCTCATGGTGCAATATTTTTTGTTCGAGATTATG
ATCCAGAAAAAAAATAAGTTAGATCTGTAACTGAATTTGGATTAAAAGAA
GCAAAAGAAGTTGTTGAAAATACCCCAAGAGTTTTAAAAGAAGGATTAAG
TAAAGCCGCTGCTGAAGAAGCAAAAATGTTTTTAGAAGAAGCAGGTGCTT
TTATGGCAGAAGAGTTTACAATTCAAGCCGCTTTATATACTCATCACCAA
TATATAGCAGGATTTTTAATGATGGGAGCATTTGCTCATGGTGCAATATT
TTTTGTTCGAGATTATGATCCAGAAAAAAAATAA
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