mRNA_H-paniculata_contig1934.4889.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1934.4889.1
Unique NamemRNA_H-paniculata_contig1934.4889.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1934.4889.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 2.540e-38
Identity = 70/141 (49.65%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    1 NTIHVDASWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHIPKLMFICAVSRPDSAHDFDRKIGIWRVCVIKETQKT-------TARRARG----------------EEYEVDVTIDAEWYRSWYLEDLLSAVKSKMWWLEGE 354
            N +H+D SWFYL+R+KEKVR+F GE+  G  +V H+SH+PK+M I A +RPD AHDFD KIGIWR+CVI+  Q++       TA   R                 EEYE D TIDAEWY+ WY++ LL A+K KM WL  +
Sbjct:  153 NVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSK 293          
BLAST of mRNA_H-paniculata_contig1934.4889.1 vs. uniprot
Match: A0A5D6XR23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR23_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.100e-11
Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    7 IHVDASWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHIPKLMFICAVSRPD----SAHDFDRKIGIWRVCVIKETQKTTARRARGEEYEVDVTIDAEWYRSWYLEDLLSAVKSK 333
            +H+D  WF + + K +V + P E        QHKSH+PKLMF+CA++RP     +   FDR IGIW         ++++ R  G      +  + E Y++  + +++ AV SK
Sbjct:   28 VHIDEKWFVVNKTKRRVYLTPTEPNPQR-HAQHKSHLPKLMFLCAITRPRVDPATGASFDRGIGIWPFAEEIPAYRSSSNRQAGTLETKPLPANKETYKAMIMTEVVPAVVSK 139          
BLAST of mRNA_H-paniculata_contig1934.4889.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.360e-11
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    7 IHVDASWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHIPKLMFICAVSRPDSAHD----FDRKIGIWRVCVIKETQKTTARRARGEEYEVDVTIDAEWYRSWYLEDLLSAVKSK 333
            IH+D  WF+L +DK    +  GEE + S   +HKSHIPKLMF+ AV RP   H     FD K+GI+   +    ++++  +A+G    +  T+  + Y    +  +L A+ +K
Sbjct:  153 IHLDEKWFFLDKDKRTFYLVKGEE-LPSRTARHKSHIPKLMFLTAVGRPQYDHGTSQYFDGKLGIFPFVIHGTAKRSSRHQAKGAPVLIPQTVTRDIYVDALVNHVLPAILTK 264          
BLAST of mRNA_H-paniculata_contig1934.4889.1 vs. uniprot
Match: A0A024UI08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI08_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.180e-10
Identity = 36/115 (31.30%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 NTIHVDASWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHIPKLMFICAVSRPD-SAH---DFDRKIGIWRVCVIKETQKTTARRARGEEYEVDVTIDAEWYRSWYLEDLLSAVKSK 333
            +T+H+D  WFY+ +   +  ++  +E V   K Q K H+ K+MF+ AV+RP   AH    +D KIG W   +++   + +    RG+     V +  E YRS+ ++ ++ A+KS+
Sbjct:   33 DTVHIDEKWFYISKVNRRYYLW-NDEPVPMRKCQSKRHLMKVMFLTAVARPRFDAHRRKSWDGKIGTWPFTMVRPALRNSKNFKRGDAITEPVVVTKEVYRSFLVDKVIPAIKSR 146          
BLAST of mRNA_H-paniculata_contig1934.4889.1 vs. uniprot
Match: F0WV30_9STRA (Transposase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WV30_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.110e-10
Identity = 33/111 (29.73%), Postives = 58/111 (52.25%), Query Frame = 1
Query:    7 IHVDASWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHIPKLMFICAVSRPD----SAHDFDRKIGIWRVCVIKETQKTTARRARGEEYEVDVTIDAEWYRSWYLEDLLSAVK 327
            +H+D  WF++ + K +V + P E     +  +HKSHIPK+MF+CAV+RP     +   FD ++G+W        ++ +  R  G         + E Y+   ++ +L A+K
Sbjct:  209 VHLDEKWFFMKKTKRRVYLTPTEP-TPYLHTRHKSHIPKIMFLCAVARPRINSCTGEVFDGRLGMWPFANYAPAERASRNREAGTLVLKSFPANKETYKRMLIDSVLPAIK 318          
BLAST of mRNA_H-paniculata_contig1934.4889.1 vs. uniprot
Match: A0A484N8H9_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N8H9_9ASTE)

HSP 1 Score: 62.4 bits (150), Expect = 6.540e-9
Identity = 40/114 (35.09%), Postives = 59/114 (51.75%), Query Frame = 1
Query:    7 IHVDASWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHIPKLMFICAVSRP----DSAHDFDRKIGIWRVCVIKETQKTTARRARGE-EYEVDVTIDAEWYRSWYLEDLLSAVKSK 333
            IH+D  WF + ++K      P E        Q KSHIPK+MF+ AVSRP    D A  +D KIGI+      + ++++  R  G  E +   +I+ +  +   LE LL A+K K
Sbjct:  210 IHIDEKWFNITKEKTTFYALPDEPDPYRT-AQSKSHIPKIMFLAAVSRPRFGNDGAVVWDGKIGIFPFTYEAQAKRSSKNRPAGTLEVKATTSINRDEIKKMLLEKLLPAIKEK 322          
BLAST of mRNA_H-paniculata_contig1934.4889.1 vs. uniprot
Match: UPI001C27B5CF (uncharacterized protein LOC121800956 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27B5CF)

HSP 1 Score: 61.6 bits (148), Expect = 1.080e-8
Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 NTIHVDASWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHIPKLMFICAVSRPDSAHD----FDRKIGIWRVCVIKETQKTTARRARGE-EYEVDVTIDAEWYRSWYLEDLLSAVKSK 333
            NTIH+D  WFY+ +  ++  + P E++      + K  I K+MF+CAVSRP    D    FD KIGI+        ++ +  R RG  E +   +++ E  R   L  ++ A+K+K
Sbjct:   60 NTIHIDEKWFYMTKASDRYYLLPDEDEPYRA-CKSKRFITKVMFMCAVSRPQFGTDGQTIFDDKIGIFSFTEQVPAKRKSKNRPRGTLETKPIPSVNKEAMRECLLNQIIPAIKAK 174          
BLAST of mRNA_H-paniculata_contig1934.4889.1 vs. uniprot
Match: Q8W1P5_ZEADI (Transposase (Fragment) n=1 Tax=Zea diploperennis TaxID=4576 RepID=Q8W1P5_ZEADI)

HSP 1 Score: 58.9 bits (141), Expect = 1.110e-8
Identity = 34/111 (30.63%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   13 VDASWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHIPKLMFICAVSRP---DSAHDFDRKIGIWRVCVIKETQKTTARRARGE-EYEVDVTIDAEWYRSWYLEDLLSAVKSK 333
            +D  WF+L R  E+  + P E+       + K++IPKLMF+CA SRP   +    FD KIG + +   +  ++++  R  G  E +   +I  +  R + +E +L A+++K
Sbjct:    1 IDEKWFFLTRKSERYYLLPDEDDPHRT-CKSKNNIPKLMFLCATSRPRFENGVCTFDGKIGCFPLVTFERAKRSSVNRPAGTMEVKPITSIKRDVIREFLIEKVLPAIRAK 110          
BLAST of mRNA_H-paniculata_contig1934.4889.1 vs. uniprot
Match: Q8W1R1_AVESA (Transposase (Fragment) n=1 Tax=Avena sativa TaxID=4498 RepID=Q8W1R1_AVESA)

HSP 1 Score: 58.5 bits (140), Expect = 1.600e-8
Identity = 38/112 (33.93%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   13 VDASWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHIPKLMFICAVSRP--DSAHD--FDRKIGIWRVCVIKETQKTTARRARGE-EYEVDVTIDAEWYRSWYLEDLLSAVKSK 333
            +D  WFY  R  +K  +   E        +HKSHI K+MF+CAV+RP  D+A +  FD K+G+W        +K +  R RG  E +V   ++ +  R + +  +L A+K+K
Sbjct:    1 IDEKWFYRSRLNQKFYLCNDEPDPHRC-TKHKSHIDKVMFLCAVARPRFDAAGNCTFDGKLGVWAFVEEVAAKKKSKNRGRGTLETKVLPKVNMQVNRQYLINHVLPAIKAK 111          
BLAST of mRNA_H-paniculata_contig1934.4889.1 vs. uniprot
Match: UPI0020096116 (uncharacterized protein LOC125197723 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020096116)

HSP 1 Score: 60.8 bits (146), Expect = 2.150e-8
Identity = 37/116 (31.90%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 NTIHVDASWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHIPKLMFICAVSRPDSAHD----FDRKIGIWRVCVIKETQKTTARRARGE-EYEVDVTIDAEWYRSWYLEDLLSAVKSK 333
            NT+H+D  WFY+ +  ++  + P E++      + K  I K+MF+CAVSRP    D    FD KIGI+        ++ +  R RG  E +   +++ E  R   L  ++ A+K+K
Sbjct:   99 NTVHIDEKWFYMTKASDRYYLLPDEDEPYR-SCKSKRFITKVMFMCAVSRPQFGTDGQTIFDGKIGIFPFTEQVPAKRKSKNRPRGTLETKPIPSVNKEAMRECLLNQIIPAIKAK 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1934.4889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE2.540e-3849.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XR23_9STRA3.100e-1132.74Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0X8U9_9STRA3.360e-1134.51Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UI08_9STRA1.180e-1031.30Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
F0WV30_9STRA5.110e-1029.73Transposase putative n=1 Tax=Albugo laibachii Nc14... [more]
A0A484N8H9_9ASTE6.540e-935.09Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
UPI001C27B5CF1.080e-832.76uncharacterized protein LOC121800956 n=2 Tax=Salvi... [more]
Q8W1P5_ZEADI1.110e-830.63Transposase (Fragment) n=1 Tax=Zea diploperennis T... [more]
Q8W1R1_AVESA1.600e-833.93Transposase (Fragment) n=1 Tax=Avena sativa TaxID=... [more]
UPI00200961162.150e-831.90uncharacterized protein LOC125197723 n=1 Tax=Salvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1934contigH-paniculata_contig1934:16047..16406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3.3e-11
Seed eggNOG ortholog4792.ETI30363
Hectar predicted targeting categoryother localisation
EggNOG OGs2EZ5K@1,2T0IQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929473.9543545-CDS-H-paniculata_contig1934:16046..164061622929473.9543545-CDS-H-paniculata_contig1934:16046..16406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1934 16047..16406 -
1691480877.053227-CDS-H-paniculata_contig1934:16046..164061691480877.053227-CDS-H-paniculata_contig1934:16046..16406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1934 16047..16406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1934.4889.1prot_H-paniculata_contig1934.4889.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1934 16047..16406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1934.4889.1

>prot_H-paniculata_contig1934.4889.1 ID=prot_H-paniculata_contig1934.4889.1|Name=mRNA_H-paniculata_contig1934.4889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
NTIHVDASWFYLIRDKEKVRMFPGEEKVGSIKVQHKSHIPKLMFICAVSR
PDSAHDFDRKIGIWRVCVIKETQKTTARRARGEEYEVDVTIDAEWYRSWY
LEDLLSAVKSKMWWLEGEDA
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mRNA from alignment at H-paniculata_contig1934:16047..16406-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1934.4889.1 ID=mRNA_H-paniculata_contig1934.4889.1|Name=mRNA_H-paniculata_contig1934.4889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig1934:16047..16406- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACACGATTCACGTCGACGCGTCGTGGTTCTACCTGATCCGTGACAAGGA AAAGGTGCGCATGTTCCCAGGGGAAGAAAAAGTGGGCTCGATCAAGGTGC AGCACAAGAGTCACATTCCCAAGCTGATGTTCATCTGCGCCGTTTCACGC CCCGATTCTGCACACGACTTCGACAGAAAGATCGGAATCTGGCGTGTCTG CGTCATCAAGGAGACACAAAAGACTACCGCGCGGCGCGCCAGGGGCGAGG AGTACGAGGTGGATGTCACTATCGATGCCGAATGGTACCGGAGTTGGTAC CTCGAAGATTTGTTATCGGCCGTGAAGAGCAAGATGTGGTGGTTGGAGGG CGAAGATGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1934:16047..16406-

>mRNA_H-paniculata_contig1934.4889.1 ID=mRNA_H-paniculata_contig1934.4889.1|Name=mRNA_H-paniculata_contig1934.4889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig1934:16047..16406- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACACGATTCACGTCGACGCGTCGTGGTTCTACCTGATCCGTGACAAGGA
AAAGGTGCGCATGTTCCCAGGGGAAGAAAAAGTGGGCTCGATCAAGGTGC
AGCACAAGAGTCACATTCCCAAGCTGATGTTCATCTGCGCCGTTTCACGC
CCCGATTCTGCACACGACTTCGACAGAAAGATCGGAATCTGGCGTGTCTG
CGTCATCAAGGAGACACAAAAGACTACCGCGCGGCGCGCCAGGGGCGAGG
AGTACGAGGTGGATGTCACTATCGATGCCGAATGGTACCGGAGTTGGTAC
CTCGAAGATTTGTTATCGGCCGTGAAGAGCAAGATGTGGTGGTTGGAGGG
CGAAGATGCCAACACGATTCACGTCGACGCGTCGTGGTTCTACCTGATCC
GTGACAAGGAAAAGGTGCGCATGTTCCCAGGGGAAGAAAAAGTGGGCTCG
ATCAAGGTGCAGCACAAGAGTCACATTCCCAAGCTGATGTTCATCTGCGC
CGTTTCACGCCCCGATTCTGCACACGACTTCGACAGAAAGATCGGAATCT
GGCGTGTCTGCGTCATCAAGGAGACACAAAAGACTACCGCGCGGCGCGCC
AGGGGCGAGGAGTACGAGGTGGATGTCACTATCGATGCCGAATGGTACCG
GAGTTGGTACCTCGAAGATTTGTTATCGGCCGTGAAGAGCAAGATGTGGT
GGTTGGAGGGCGAAGATGCC
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