mRNA_H-paniculata_contig19324.4883.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19324.4883.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI) HSP 1 Score: 144 bits (362), Expect = 8.600e-38 Identity = 68/101 (67.33%), Postives = 79/101 (78.22%), Query Frame = 1
Query: 1 DNAESWEGWVYALCVVLGGVLFSFSHHLHFFQTWILGMELRVATTAVLYDKILRLRLSSLGQVTTGHLVNLATTDVERFHWAAIFTNYIWLAPAETLVIAY 303
D +ESWEGW YA VVLGGVLFSF F W LGM+LR++TT VLYDKILRLRLSSLGQ++TGHLVNL T+DVERF + +F NY+W AP E+LVI Y
Sbjct: 125 DRSESWEGWTYASAVVLGGVLFSFFXXXXXFVGWTLGMQLRISTTTVLYDKILRLRLSSLGQISTGHLVNLTTSDVERFQYGGLFVNYLWEAPLESLVILY 225
BLAST of mRNA_H-paniculata_contig19324.4883.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI) HSP 1 Score: 130 bits (328), Expect = 3.320e-33 Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 1
Query: 1 DNAESWEGWVYALCVVLGGVLFSFSHHLHFFQTWILGMELRVATTAVLYDKILRLRLSSLGQVTTGHLVNLATTDVERFHWAAIFTNYIWLAPAETLVIAY 303
+ + SWEGW YA VVLGGV F H FF + LGM+LR+ TT +LYDKILRLRLSSLGQ++TGHLVNL TTDVE F A F NY+W AP E+LVI Y
Sbjct: 25 EASASWEGWTYASVVVLGGVFICFFIHHFFFVGYTLGMQLRICTTTILYDKILRLRLSSLGQISTGHLVNLTTTDVEAFQIAGTFVNYLWGAPLESLVILY 125
BLAST of mRNA_H-paniculata_contig19324.4883.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI) HSP 1 Score: 125 bits (313), Expect = 3.510e-31 Identity = 60/101 (59.41%), Postives = 74/101 (73.27%), Query Frame = 1
Query: 1 DNAESWEGWVYALCVVLGGVLFSFSHHLHFFQTWILGMELRVATTAVLYDKILRLRLSSLGQVTTGHLVNLATTDVERFHWAAIFTNYIWLAPAETLVIAY 303
+ + SWEGW YA VVLGG+L F H F ++LGM+LR++TT +LYDKILRLRLS LGQ++TGHLVNL TTDVE F F NY+W AP ++LVI Y
Sbjct: 72 ETSASWEGWTYASVVVLGGLLIGFFLHHFNFVGYMLGMQLRISTTTILYDKILRLRLSLLGQISTGHLVNLTTTDVEAFQKGGTFVNYLWGAPLQSLVILY 172
BLAST of mRNA_H-paniculata_contig19324.4883.1 vs. uniprot
Match: A0A835YMC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC7_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.530e-21 Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 1
Query: 22 GWVYALCVVLGGVLFSFSHHLHFFQTWILGMELRVATTAVLYDKILRLRLSSLGQVTTGHLVNLATTDVERFHWAAIFTNYIWLAPAETLVIAY 303
GW A +V G++ H + W LGME+R+A TA +YDKILR+RL +L VTTGH++NLATTDVERF IF Y+W AP ET+VI Y
Sbjct: 221 GWGSAAVLVACGLVGPVFIHHFYISAWELGMEMRLAGTAAIYDKILRVRLGALAGVTTGHVINLATTDVERFILMGIFWPYLWEAPLETVVILY 314
BLAST of mRNA_H-paniculata_contig19324.4883.1 vs. uniprot
Match: A0A8J5CN58_CHIOP (Multidrug resistance-associated protein 4 n=1 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J5CN58_CHIOP) HSP 1 Score: 95.9 bits (237), Expect = 6.360e-21 Identity = 43/99 (43.43%), Postives = 69/99 (69.70%), Query Frame = 1
Query: 1 DNAESWEGWVYALCVVLGGVLFSFSHHLHFFQTWILGMELRVATTAVLYDKILRLRLSSLGQVTTGHLVNLATTDVERFHWAAIFTNYIWLAPAETLVI 297
D + +GW+++ VV+G +L+ FSHH +FF GM LR+++ +++Y K LRL ++LG+ TTG +VNL + DV RF +AIF +YIW+ P +TL++
Sbjct: 95 DGYTAVDGWLFSTGVVMGSLLYIFSHHPYFFGVQHGGMTLRISSCSLIYRKSLRLSKAALGKTTTGQMVNLLSNDVNRFDTSAIFLHYIWIGPVQTLIV 193
BLAST of mRNA_H-paniculata_contig19324.4883.1 vs. uniprot
Match: A0A0P4VXN7_SCYOL (Uncharacterized protein n=8 Tax=Portunidae TaxID=6757 RepID=A0A0P4VXN7_SCYOL) HSP 1 Score: 95.5 bits (236), Expect = 8.700e-21 Identity = 42/93 (45.16%), Postives = 66/93 (70.97%), Query Frame = 1
Query: 19 EGWVYALCVVLGGVLFSFSHHLHFFQTWILGMELRVATTAVLYDKILRLRLSSLGQVTTGHLVNLATTDVERFHWAAIFTNYIWLAPAETLVI 297
+GW+Y+ VV+G +L+ F+HH +FF GM LR+++ ++Y K LRL ++LG+ TTG +VNL + DV RF +AIF +YIW+ P +TL++
Sbjct: 131 DGWIYSTGVVMGSLLYIFTHHPYFFGVQHGGMTLRISSCTLIYRKALRLSKAALGKTTTGQMVNLLSNDVNRFDTSAIFLHYIWIGPLQTLIV 223
BLAST of mRNA_H-paniculata_contig19324.4883.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.620e-20 Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1
Query: 106 LGMELRVATTAVLYDKILRLRLSSLGQVTTGHLVNLATTDVERFHWAAIFTNYIWLAPAETLVIAY 303
LGM+LR++TT +LYDKILRLRLS LGQ++TGHLVNL TTDVE F F NY+W AP ++LVI Y
Sbjct: 2 LGMQLRISTTTILYDKILRLRLSLLGQISTGHLVNLTTTDVEAFQKGGTFVNYLWGAPIQSLVILY 67
BLAST of mRNA_H-paniculata_contig19324.4883.1 vs. uniprot
Match: UPI001E676A9E (ATP-binding cassette sub-family C member 4-like isoform X1 n=7 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E676A9E) HSP 1 Score: 93.2 bits (230), Expect = 5.630e-20 Identity = 41/93 (44.09%), Postives = 65/93 (69.89%), Query Frame = 1
Query: 19 EGWVYALCVVLGGVLFSFSHHLHFFQTWILGMELRVATTAVLYDKILRLRLSSLGQVTTGHLVNLATTDVERFHWAAIFTNYIWLAPAETLVI 297
+GW+++ VV+G VL+ FSHH FF GM++RVA+ A++Y K LRL ++LG+ T G +VNL + DV RF + IF +Y+W+ P +T+++
Sbjct: 140 DGWLFSTGVVMGSVLYIFSHHPFFFGIQHSGMQIRVASCAMIYRKALRLSKAALGKTTVGQMVNLLSNDVNRFDTSVIFIHYLWIGPLQTMIV 232
BLAST of mRNA_H-paniculata_contig19324.4883.1 vs. uniprot
Match: A0A8J5N746_HOMAM (Cystic fibrosis transmembrane conductance regulator n=8 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5N746_HOMAM) HSP 1 Score: 90.5 bits (223), Expect = 4.970e-19 Identity = 38/92 (41.30%), Postives = 65/92 (70.65%), Query Frame = 1
Query: 22 GWVYALCVVLGGVLFSFSHHLHFFQTWILGMELRVATTAVLYDKILRLRLSSLGQVTTGHLVNLATTDVERFHWAAIFTNYIWLAPAETLVI 297
GW+Y+ VV+G +L+ FSHH +F+ + GM++RVA+ +++Y K LRL +LG+ T G ++NL + DV RF + IF +Y+W+ P +T+++
Sbjct: 109 GWLYSTGVVMGSILYIFSHHPYFWGVQLSGMQIRVASCSMIYRKALRLSKVALGKTTIGQMINLLSNDVNRFDASFIFLHYLWIGPLQTMIV 200
BLAST of mRNA_H-paniculata_contig19324.4883.1 vs. uniprot
Match: UPI001FB6EA1C (ATP-binding cassette sub-family C member 4-like isoform X3 n=15 Tax=Penaeus TaxID=133894 RepID=UPI001FB6EA1C) HSP 1 Score: 89.7 bits (221), Expect = 9.270e-19 Identity = 40/93 (43.01%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 19 EGWVYALCVVLGGVLFSFSHHLHFFQTWILGMELRVATTAVLYDKILRLRLSSLGQVTTGHLVNLATTDVERFHWAAIFTNYIWLAPAETLVI 297
+GW++A VV+G +L+ FSHH F+ GM++RVA+ A++Y K LRL ++LG+ T G +VNL + DV RF + IF +Y+W+ P +T ++
Sbjct: 160 DGWLFATGVVMGSLLYIFSHHPFFWGIQHSGMQIRVASCALIYRKALRLSKAALGKTTIGQMVNLLSNDVNRFDTSVIFIHYLWIGPLQTAIV 252 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19324.4883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19324.4883.1 >prot_H-paniculata_contig19324.4883.1 ID=prot_H-paniculata_contig19324.4883.1|Name=mRNA_H-paniculata_contig19324.4883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp DNAESWEGWVYALCVVLGGVLFSFSHHLHFFQTWILGMELRVATTAVLYDback to top mRNA from alignment at H-paniculata_contig19324:1944..4673+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19324.4883.1 ID=mRNA_H-paniculata_contig19324.4883.1|Name=mRNA_H-paniculata_contig19324.4883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2730bp|location=Sequence derived from alignment at H-paniculata_contig19324:1944..4673+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19324:1944..4673+ >mRNA_H-paniculata_contig19324.4883.1 ID=mRNA_H-paniculata_contig19324.4883.1|Name=mRNA_H-paniculata_contig19324.4883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig19324:1944..4673+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |