mRNA_H-paniculata_contig1925.4853.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1925.4853.1
Unique NamemRNA_H-paniculata_contig1925.4853.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1925.4853.1 vs. uniprot
Match: D8LI47_ECTSI (Sulfhydryl oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI47_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 2.390e-45
Identity = 68/101 (67.33%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:    1 LHTTAAYYPDEPSKELQDHTKAFVTGLAQLYPCSYCREDFKREVVQDPPRQETVESRLAFSLWTCRQHNTVNNKLGKPTFECTLPRLDERWKTGKKSCWEG 303
            +HTTAA+YP++PSKE QD  +A VTGLA LYPC+YCR+DF+ EV + PP    V SR+A SLW C+QHN VN K+GKPTF CTLP LDERWK GK SCWEG
Sbjct:   92 IHTTAAHYPEKPSKETQDQARALVTGLAGLYPCTYCRKDFREEVRKLPP---DVSSRVALSLWACQQHNLVNEKIGKPTFGCTLPALDERWKKGKPSCWEG 189
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BLAST of mRNA_H-paniculata_contig1925.4853.1 vs. uniprot
Match: F0W2L6_9STRA (Sulfhydryl oxidase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2L6_9STRA)

HSP 1 Score: 134 bits (338), Expect = 9.300e-38
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 LHTTAAYYPDEPSKELQDHTKAFVTGLAQLYPCSYCREDFKREVVQDPPRQETVESRLAFSLWTCRQHNTVNNKLGKPTFECTLPRLDERWKTGKKSCWE 300
            +H+   YYP++PS+E Q H ++FV  LA +YPCS C EDF++E+ + PP+   VESR AFS+W C QHN VN K+GKP F+C +  L ERW+TGKK CW+
Sbjct:   71 MHSIGVYYPEKPSEEYQRHARSFVEALALMYPCSDCAEDFRKEIAKCPPK---VESRQAFSMWLCEQHNLVNEKIGKPLFQCNMSTLSERWRTGKKECWD 167
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BLAST of mRNA_H-paniculata_contig1925.4853.1 vs. uniprot
Match: A0A662WET0_9STRA (Sulfhydryl oxidase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WET0_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.170e-37
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:    1 LHTTAAYYPDEPSKELQDHTKAFVTGLAQLYPCSYCREDFKREVVQDPPRQETVESRLAFSLWTCRQHNTVNNKLGKPTFECTLPRLDERWKTGKKSCWEGVSSDPD 321
            LH+   YYPD+PS E Q  T+ F+  LA +YPC +C EDF++E+ + PPR     SR+ FS+W C QHN VN K+ +PTFECT+  L+ERW+ GK SCW G  +DP+
Sbjct:   64 LHSMGIYYPDKPSAEYQAKTRTFIEALALMYPCVHCAEDFQKEIAKSPPRYTFNFSRMTFSMWLCEQHNIVNRKIHRPTFECTMENLEERWRKGKPSCW-GEDADPE 169
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BLAST of mRNA_H-paniculata_contig1925.4853.1 vs. uniprot
Match: A0A024GDH3_9STRA (Sulfhydryl oxidase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GDH3_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.650e-37
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 LHTTAAYYPDEPSKELQDHTKAFVTGLAQLYPCSYCREDFKREVVQDPPRQETVESRLAFSLWTCRQHNTVNNKLGKPTFECTLPRLDERWKTGKKSCW 297
            +H+   YYP+ PS+E Q H ++F+  LA +YPCS C EDF++E+++ PPR   V+SR +FSLW C QHN VN K+GKP F+C +  L ERW+TGKK CW
Sbjct:   71 MHSIGMYYPENPSEEYQRHARSFIEALALMYPCSDCAEDFRKEIIKCPPR---VKSRQSFSLWLCEQHNLVNEKIGKPIFQCNMSTLSERWRTGKKECW 166
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BLAST of mRNA_H-paniculata_contig1925.4853.1 vs. uniprot
Match: H3HAY4_PHYRM (Sulfhydryl oxidase n=2 Tax=Phytophthora TaxID=4783 RepID=H3HAY4_PHYRM)

HSP 1 Score: 130 bits (328), Expect = 1.760e-36
Identity = 56/107 (52.34%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    1 LHTTAAYYPDEPSKELQDHTKAFVTGLAQLYPCSYCREDFKREVVQDPPRQETVESRLAFSLWTCRQHNTVNNKLGKPTFECTLPRLDERWKTGKKSCWEGVSSDPD 321
            LH+   YYPD+PS E Q  TK F+  LA +YPC +C +DF++E+ + PP    VESR  FS+W C QHN VN K+ KP FECT+ +L+ERW+ GK SCW G   D D
Sbjct:   55 LHSMGIYYPDKPSAEYQAKTKTFIEALALMYPCVHCADDFQKEIAKSPP---CVESRTTFSMWLCEQHNIVNRKIHKPVFECTMEKLEERWRKGKPSCW-GEDGDED 157
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BLAST of mRNA_H-paniculata_contig1925.4853.1 vs. uniprot
Match: G4YVZ9_PHYSP (Sulfhydryl oxidase n=8 Tax=Phytophthora TaxID=4783 RepID=G4YVZ9_PHYSP)

HSP 1 Score: 130 bits (327), Expect = 2.720e-36
Identity = 53/99 (53.54%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 LHTTAAYYPDEPSKELQDHTKAFVTGLAQLYPCSYCREDFKREVVQDPPRQETVESRLAFSLWTCRQHNTVNNKLGKPTFECTLPRLDERWKTGKKSCW 297
            LH+   YYPD+PS E Q   K F+  LA +YPC +C +DF++E+ + PPR   VESR  FS+W C QHN VN K+ KP FECT+ +L+ERW+ GK SCW
Sbjct:   58 LHSMGIYYPDKPSPEYQAKAKTFIEALALMYPCVHCADDFQKEIAKSPPR---VESRTTFSMWLCEQHNIVNRKIHKPLFECTMEKLEERWRKGKPSCW 153
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BLAST of mRNA_H-paniculata_contig1925.4853.1 vs. uniprot
Match: D0N2Y7_PHYIT (Sulfhydryl oxidase n=10 Tax=Phytophthora TaxID=4783 RepID=D0N2Y7_PHYIT)

HSP 1 Score: 130 bits (326), Expect = 3.850e-36
Identity = 57/107 (53.27%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    1 LHTTAAYYPDEPSKELQDHTKAFVTGLAQLYPCSYCREDFKREVVQDPPRQETVESRLAFSLWTCRQHNTVNNKLGKPTFECTLPRLDERWKTGKKSCWEGVSSDPD 321
            LH+   YYPD+PS E Q   K F+  LA +YPC +C EDF++EV   PPR   VESR  FS+W C QHN VN K+ KP FECT+ +L+ERW+ GK +CW G   D D
Sbjct:   58 LHSMGIYYPDKPSPEYQAKAKTFIEALALMYPCVHCAEDFQKEVAISPPR---VESRTTFSMWLCEQHNIVNRKIHKPVFECTMEKLEERWRKGKPACW-GEDGDED 160
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BLAST of mRNA_H-paniculata_contig1925.4853.1 vs. uniprot
Match: A0A421F794_9STRA (Sulfhydryl oxidase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F794_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.100e-35
Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 LHTTAAYYPDEPSKELQDHTKAFVTGLAQLYPCSYCREDFKREVVQDPPRQETVESRLAFSLWTCRQHNTVNNKLGKPTFECTLPRLDERWKTGKKSCW 297
            LH+   YYPD+PS E Q   + FV  LA +YPC +C +DF++E+ + PPR   VESR  FS+W C QHN VN K+ KP F+CT+ +L+ERW+ GK SCW
Sbjct:   58 LHSMGIYYPDKPSPEYQAKARTFVEALALMYPCVHCADDFQKEIAKSPPR---VESRTTFSMWLCEQHNIVNRKIHKPVFDCTMEKLEERWRKGKPSCW 153
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BLAST of mRNA_H-paniculata_contig1925.4853.1 vs. uniprot
Match: A0A0P1AF28_PLAHL (Sulfhydryl oxidase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AF28_PLAHL)

HSP 1 Score: 129 bits (323), Expect = 1.130e-35
Identity = 58/110 (52.73%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:    1 LHTTAAYYPDEPSKELQDHTKAFVTGLAQLYPCSYCREDFKREVVQDPPRQETVESRLAFSLWTCRQHNTVNNKLGKPTFECTLPRLDERWKTGKKSCWEGVSSDPDGDG 330
            LHT   YYPD+PS E Q+  K FV  LA +YPC +C +DF++E+   PPR   VESR  FS+W C QHN VN K+ KP FECT+ RL+ERW+ G   CW G  SD +  G
Sbjct:   58 LHTIGIYYPDKPSSEYQNKVKTFVETLALMYPCVHCADDFQKEIALSPPR---VESRTTFSIWLCEQHNIVNRKIQKPEFECTMNRLEERWRKGHPVCW-GQESDAESAG 163
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BLAST of mRNA_H-paniculata_contig1925.4853.1 vs. uniprot
Match: A0A225VL11_9STRA (Sulfhydryl oxidase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VL11_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.260e-34
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 LHTTAAYYPDEPSKELQDHTKAFVTGLAQLYPCSYCREDFKREVVQDPPRQETVESRLAFSLWTCRQHNTVNNKLGKPTFECTLPRLDERWKTGKKSCWEG 303
            LHT    YPD+PS E Q  T+ F+  LA LYPC +C EDF++EV + PPR   V SR + S+W C QHN V+ KL KPTFECT+ +L+ERW TGK  C EG
Sbjct:   31 LHTMGLAYPDKPSPEYQAKTRVFMETLALLYPCGHCAEDFQKEVAKSPPR---VSSRTSLSMWLCEQHNLVSVKLNKPTFECTMEKLEERWWTGKPGCHEG 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1925.4853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI47_ECTSI2.390e-4567.33Sulfhydryl oxidase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
F0W2L6_9STRA9.300e-3854.00Sulfhydryl oxidase n=1 Tax=Albugo laibachii Nc14 T... [more]
A0A662WET0_9STRA1.170e-3751.40Sulfhydryl oxidase n=1 Tax=Nothophytophthora sp. C... [more]
A0A024GDH3_9STRA2.650e-3753.54Sulfhydryl oxidase n=1 Tax=Albugo candida TaxID=65... [more]
H3HAY4_PHYRM1.760e-3652.34Sulfhydryl oxidase n=2 Tax=Phytophthora TaxID=4783... [more]
G4YVZ9_PHYSP2.720e-3653.54Sulfhydryl oxidase n=8 Tax=Phytophthora TaxID=4783... [more]
D0N2Y7_PHYIT3.850e-3653.27Sulfhydryl oxidase n=10 Tax=Phytophthora TaxID=478... [more]
A0A421F794_9STRA1.100e-3552.53Sulfhydryl oxidase n=3 Tax=Phytophthora kernoviae ... [more]
A0A0P1AF28_PLAHL1.130e-3552.73Sulfhydryl oxidase n=1 Tax=Plasmopara halstedii Ta... [more]
A0A225VL11_9STRA1.260e-3455.45Sulfhydryl oxidase n=1 Tax=Phytophthora megakarya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1925contigH-paniculata_contig1925:9537..10666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue5.4e-35
Seed eggNOG ortholog2880.D8LI47
Preferred nameGFER
KEGG koko:K17783
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001889,GO:0001910,GO:0001911,GO:0002237,GO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002703,GO:0002704,GO:0002706,GO:0002707,GO:0002715,GO:0002716,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009636,GO:0009719,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010556,GO:0010557,GO:0010604,GO:0010941,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0016670,GO:0016971,GO:0016972,GO:0019219,GO:0019222,GO:0031099,GO:0031100,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031341,GO:0031342,GO:0031347,GO:0031348,GO:0032496,GO:0032501,GO:0032502,GO:0033993,GO:0034097,GO:0034612,GO:0036094,GO:0040007,GO:0042060,GO:0042221,GO:0042246,GO:0042269,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045824,GO:0045935,GO:0045953,GO:0046677,GO:0048037,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048731,GO:0048732,GO:0048856,GO:0050660,GO:0050662,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0060255,GO:0060548,GO:0061008,GO:0065007,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071236,GO:0071310,GO:0071345,GO:0071356,GO:0071396,GO:0071417,GO:0071495,GO:0072716,GO:0072717,GO:0080090,GO:0080134,GO:0080135,GO:0097159,GO:0097237,GO:0097421,GO:1900407,GO:1900408,GO:1901214,GO:1901215,GO:1901265,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903203,GO:1903204,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.sulfhydryl oxidase
EggNOG OGsCOG5054@1,KOG3355@2759
Ec32 ortholog descriptionMitochondrial intermembrane space Erv1 homolog
Ec32 orthologEc-26_005200.1
EC1.8.3.2
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Exons2
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929469.62322-CDS-H-paniculata_contig1925:9536..96941622929469.62322-CDS-H-paniculata_contig1925:9536..9694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1925 9537..9694 +
1691480875.2247152-CDS-H-paniculata_contig1925:9536..96941691480875.2247152-CDS-H-paniculata_contig1925:9536..9694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1925 9537..9694 +
1622929469.6372306-CDS-H-paniculata_contig1925:10473..106661622929469.6372306-CDS-H-paniculata_contig1925:10473..10666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1925 10474..10666 +
1691480875.2392993-CDS-H-paniculata_contig1925:10473..106661691480875.2392993-CDS-H-paniculata_contig1925:10473..10666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1925 10474..10666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1925.4853.1prot_H-paniculata_contig1925.4853.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1925 9537..10666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1925.4853.1

>prot_H-paniculata_contig1925.4853.1 ID=prot_H-paniculata_contig1925.4853.1|Name=mRNA_H-paniculata_contig1925.4853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
LHTTAAYYPDEPSKELQDHTKAFVTGLAQLYPCSYCREDFKREVVQDPPR
QETVESRLAFSLWTCRQHNTVNNKLGKPTFECTLPRLDERWKTGKKSCWE
GVSSDPDGDGHDEGGE*
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mRNA from alignment at H-paniculata_contig1925:9537..10666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1925.4853.1 ID=mRNA_H-paniculata_contig1925.4853.1|Name=mRNA_H-paniculata_contig1925.4853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1130bp|location=Sequence derived from alignment at H-paniculata_contig1925:9537..10666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCATACGACTGCCGCATACTACCCCGACGAGCCATCTAAGGAGTTGCA
AGATCACACGAAGGCGTTTGTCACTGGTCTTGCGCAATTGTACCCATGCA
GCTATTGCCGGGAGGACTTCAAGCGGGAGGTTGTTCAAGACCCTCCAAGG
CAAGAGACGTTCTGATTTCTCCGGCATTTATTGTTGCATTCGCTCCAATA
CATGAGTTCGTTTTTCTTTTATTATTATTATTATTATTACTGTACACTGT
CGTGTTTGCAGCGGACTAAAGGTATCTGTGAAGCGCTCCCCCCCCCCCGC
CCACCCGACCGTTACACCCCAGGGCTCAGAGATCAATTGGCGCCAGATAT
ATATATATATATATATATATTTGGTGTTCGTTACGATGCTCCGCATGTTT
GCAGCAGATGTAATCGAAGAAACGGGCCGCCCACCCGTTTTACCGCGTCT
CCGCCCGCCGCCCCAGGCCTTACACACAATACCTGCGGCTCACGTGTGAA
GTTAACTTTCTACTCGTTCTACCTGATGTACTTATTCAACAGCTTCGGCA
CGTTTGCACCCGACCGAAGTTGGATGCGCATACCCTGTGGAACCCTCTCA
TGGGTATGTTTGGCTGACCCCTTGGAACTTCGCGCGTAGTCACTTGAGCG
GCAATCTTTATGAAGAAGGACGTGAGTTACCATGTTGAACTTTACTCCAA
AATAGTCGTGATTAAATAGTACTATATTTAACTGAAGTATATAAATGATA
CATGTTATGCTGTAGCAAATTGCTCCTTATGTTCACGGCAAGCGCTGGTG
CCTCATGTTACATCCCGGTCGATAGCTATATGTTCAACTCTCGCTTTCAT
TTTCTCCGGCTTTGTTCGCGCTGTGTTATGCTACAAGCGTACTACCAACT
TCCACTCCCCTTCCCCCCCCCCCCCCGTCCGTACCAGTGTTGAATCGCGC
CTGGCTTTTTCATTGTGGACTTGTCGACAGCACAACACCGTCAACAACAA
GCTTGGGAAACCGACATTCGAATGCACTCTGCCACGTTTGGATGAACGAT
GGAAGACGGGCAAGAAATCTTGCTGGGAAGGCGTAAGCAGTGATCCTGAC
GGTGACGGTCATGATGAAGGGGGTGAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1925:9537..10666+

>mRNA_H-paniculata_contig1925.4853.1 ID=mRNA_H-paniculata_contig1925.4853.1|Name=mRNA_H-paniculata_contig1925.4853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig1925:9537..10666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCATACGACTGCCGCATACTACCCCGACGAGCCATCTAAGGAGTTGCA
AGATCACACGAAGGCGTTTGTCACTGGTCTTGCGCAATTGTACCCATGCA
GCTATTGCCGGGAGGACTTCAAGCGGGAGGTTGTTCAAGACCCTCCAAGG
CAAGAGACCTGCATACGACTGCCGCATACTACCCCGACGAGCCATCTAAG
GAGTTGCAAGATCACACGAAGGCGTTTGTCACTGGTCTTGCGCAATTGTA
CCCATGCAGCTATTGCCGGGAGGACTTCAAGCGGGAGGTTGTTCAAGACC
CTCCAAGGCAAGAGACTGTTGAATCGCGCCTGGCTTTTTCATTGTGGACT
TGTCGACAGCACAACACCGTCAACAACAAGCTTGGGAAACCGACATTCGA
ATGCACTCTGCCACGTTTGGATGAACGATGGAAGACGGGCAAGAAATCTT
GCTGGGAAGGCGTAAGCAGTGATCCTGACGGTGACGGTCATGATGAAGGG
GGTGAATGATGTTGAATCGCGCCTGGCTTTTTCATTGTGGACTTGTCGAC
AGCACAACACCGTCAACAACAAGCTTGGGAAACCGACATTCGAATGCACT
CTGCCACGTTTGGATGAACGATGGAAGACGGGCAAGAAATCTTGCTGGGA
AGGCGTAAGCAGTGATCCTGACGGTGACGGTCATGATGAAGGGGGTGAAT
GA
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