mRNA_H-paniculata_contig19243.4851.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19243.4851.1
Unique NamemRNA_H-paniculata_contig19243.4851.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19243.4851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19243contigH-paniculata_contig19243:1933..4926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2451
Cds size2451
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19243.4851.1prot_H-paniculata_contig19243.4851.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19243 1933..4926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929469.3775947-CDS-H-paniculata_contig19243:1932..35671622929469.3775947-CDS-H-paniculata_contig19243:1932..3567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19243 1933..3567 -
1691480875.106518-CDS-H-paniculata_contig19243:1932..35671691480875.106518-CDS-H-paniculata_contig19243:1932..3567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19243 1933..3567 -
1622929469.3930228-CDS-H-paniculata_contig19243:3918..40501622929469.3930228-CDS-H-paniculata_contig19243:3918..4050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19243 3919..4050 -
1691480875.1173625-CDS-H-paniculata_contig19243:3918..40501691480875.1173625-CDS-H-paniculata_contig19243:3918..4050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19243 3919..4050 -
1622929469.4074228-CDS-H-paniculata_contig19243:4242..49261622929469.4074228-CDS-H-paniculata_contig19243:4242..4926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19243 4243..4926 -
1691480875.1304753-CDS-H-paniculata_contig19243:4242..49261691480875.1304753-CDS-H-paniculata_contig19243:4242..4926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19243 4243..4926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19243.4851.1

>prot_H-paniculata_contig19243.4851.1 ID=prot_H-paniculata_contig19243.4851.1|Name=mRNA_H-paniculata_contig19243.4851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=817bp
APTETPTPTPTPAPTRAPTEAATPVPTPAPSTAPTPVSTISPTPTPTPSP
ITTPTRAPTEAPTPGPSLSPTLAPTRAPTETPTPTPTPAPTRAPTEAATP
VPTPAPSIAPTPVSTISPTPTPTPSPTTIPTRAPTEVPTPGPSLSPTLAP
TRAPTETPTPTPTPAPTRAPTEAATPVPTPAPSTAPTPVPTISPTPTPTP
SPTPVPSRAPTEAPTPVPTPAPSTAPTPALTPAPSLSPSPAPTRPPTKAP
TPAPTPTPTPAPTRAPTVAPTPMPTPAPSLSPTPPTTLAPTKAPTRAPTI
ATTPTPTPAPTLAPTEAPTPVPTLAPSTAPSPAPTISPTPVPTPAPTLAP
TRAPSEFSTPVSTPAPSTAPSPASTVSATTAPTPAPTPAPTRARTEDPTP
VPTPAPSTAPSPVPTTSPTSAPTPAPTPAPSRAPTEAPTPAPSLSPTPAP
TRPPTKAPTPAPTRAPTEVPTSAPSLSPTQAPTRPPTRVPSPAPTPTPTT
APSGAPTEAPTPVPTPAPSIEPTPVPTTSPTLAPTPAPTTEPTRAPTDVP
TPVPSLSPTPARTRPPTEAPTPAPTPASTRGPTEAPTPVPTRAPSTAPSP
APTISPTLAPTPAPTPAPTRAPTKVPTPVPTPVSTPAPTEAPTPAPTEAP
TPAPTLGPTEAPTPAPTEAPTPAPTLVPTTAPTPTPTLPPTPSPTVVPTP
VPSPAPTEAPTPTPTEAPTPAPTLGPTEAPTPPPTEAPTPAPTLVPTTAP
TPAPTLPPMPSPTVVPTPVPSPAPTEAPTPTPTEAPTPATTLEPTEAPTP
APTEPPTPAPTLASIEP
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mRNA from alignment at H-paniculata_contig19243:1933..4926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19243.4851.1 ID=mRNA_H-paniculata_contig19243.4851.1|Name=mRNA_H-paniculata_contig19243.4851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2994bp|location=Sequence derived from alignment at H-paniculata_contig19243:1933..4926- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCCTACCGAGACGCCGACACCTACGCCGACACCAGCACCTACCCGAGC
TCCTACCGAGGCCGCGACCCCAGTTCCCACGCCGGCGCCTTCGACCGCAC
CTACTCCAGTTTCGACGATATCTCCAACACCCACTCCAACGCCGTCGCCC
ATAACAACCCCTACCCGAGCTCCTACCGAGGCCCCGACTCCCGGCCCTTC
GCTCTCTCCCACACTAGCACCTACTCGAGCTCCTACCGAGACGCCGACAC
CTACGCCGACACCAGCACCTACCCGAGCTCCTACCGAGGCCGCGACCCCA
GTTCCCACGCCGGCGCCTTCGATCGCACCTACTCCAGTTTCGACGATATC
TCCAACACCCACTCCAACGCCGTCGCCCACAACAATCCCTACCCGAGCTC
CTACCGAGGTCCCGACTCCCGGCCCTTCGCTCTCTCCCACACTAGCACCT
ACTCGAGCTCCTACCGAGACGCCGACACCGACGCCGACACCAGCACCTAC
CCGAGCTCCTACCGAGGCCGCGACCCCAGTTCCCACGCCGGCGCCTTCGA
CCGCACCTACTCCAGTTCCAACGATATCTCCAACACCCACTCCAACGCCG
TCGCCCACGCCAGTGCCTAGCCGAGCTCCTACCGAGGCGCCTACGCCGGT
CCCCACGCCGGCGCCTTCGACAGCACCTACTCCAGTTGCAACGACACCTC
CAACATCCCCTCCGACGTCGGCATCCACACCAGCACCTAGCAGAGCTCCT
ATCGATGCGCCGACTCCCGCCCCTTCGCTCTCGCCCACACCAGCACGTAC
TCGACCTCCTACCAAGGCACCATCGCCCGCTCCTACACCTACACCTACGC
TAGTACCTAGCGGAGCTCCTACCGAGGCTCTGACTCCCGCCCCTTCGCTC
TCGCCTTCACCGGCACCTACTCGACCTCCTACCAAAGCACCGACGCCCGC
CCCTACACCTACGCCCACACCAGCACCTACTCGAGCTCCTACCGTGGCGC
CTACGCCGGTTCCCACGCTCGCGCCTACGGCAGCACCTACTTCAGTTGCA
ACATCTCCAACATCCGCTCCAACGCCAACGCCCACACAAGAACCCACGCG
AGCTCCTACGGAGGCGCCCACTCCCACCCCTTCGCTCTCACCTACACCAG
TATCTATTCGACCTCCTACCAAGGCACCGTCGCCCGCCCCTACACCTACA
CCTACGCCTACACCAGCACCTAGCCCAGATCCCACGGAGGCGCCTACGTC
GGTTCCCACGCCTGCGTCTTCGACAGCACCTACTTCAGTTGCAACGACAT
CTCCAAGACCAGCTCCAACGCCAGCGCCCACACCAGAACCCACGCGAGCT
CCTACCGAGATGCCGACTCCCGCCCCTTCGCTCTCGCCCACACCACCAAC
TACTCTAGCTCCTACCAAGGCACCTACACGAGCTCCTACCATCGCAACTA
CACCCACTCCTACGCCAGCACCTACTCTAGCTCCTACCGAGGCGCCTACG
CCAGTTCCCACGCTTGCGCCTTCGACAGCACCATCCCCGGCTCCAACAAT
ATCCCCAACACCCGTTCCAACGCCGGCGCCCACACTAGCCCCGACCCGAG
CTCCTAGCGAATTTTCTACGCCCGTCTCCACGCCGGCGCCTTCCACAGCA
CCATCCCCGGCTTCAACGGTGTCTGCAACAACCGCTCCAACGCCTGCGCC
CACACCAGCACCTACCCGAGCTCGTACCGAGGATCCTACACCGGTTCCCA
CGCCCGCACCTTCGACAGCACCATCCCCAGTTCCAACGACATCTCCAACA
TCCGCTCCAACACCGGCGCCGACACCAGCACCCAGCCGAGCTCCGACCGA
GGCGCCGACTCCCGCCCCTTCCCTCTCGCCCACACCAGCTCCTACTCGAC
CTCCTACCAAGGCGCCGACACCGGCTCCTACCCGAGCTCCTACCGAGGTA
CCGACTTCCGCCCCGTCGCTCTCACCTACACAAGCACCTACTCGACCTCC
TACCAGGGTACCGTCGCCCGCCCCTACACCTACACCTACGACAGCACCTA
GTGGAGCTCCTACCGAGGCGCCTACGCCCGTTCCCACGCCCGCGCCTTCG
ATAGAACCTACTCCAGTTCCAACGACATCTCCAACACTCGCTCCAACGCC
GGCGCCAACAACAGAACCCACCCGAGCTCCTACCGACGTGCCGACCCCCG
TCCCTTCGCTCTCGCCCACACCAGCACGTACTCGACCTCCTACCGAGGCG
CCTACGCCCGCCCCTACGCCAGCATCTACCCGAGGTCCTACTGAGGCTCC
TACGCCGGTTCCCACGCGCGCGCCTTCGACAGCACCATCCCCGGCTCCAA
CGATATCTCCAACACTCGCTCCAACGCCGGCGCCCACACCGGCTCCTACC
CGAGCTCCTACGAAGGTACCTACGCCGGTCCCCACACCAGTATCAACCCC
AGCTCCTACCGAAGCGCCTACACCTGCGCCTACTGAGGCGCCGACTCCCG
CCCCTACGCTTGGACCTACGGAAGCGCCAACCCCCGCTCCTACTGAGGCA
CCTACGCCGGCTCCTACGCTCGTACCTACAACAGCACCGACCCCGACTCC
TACACTACCTCCGACGCCCAGTCCTACGGTCGTGCCCACACCAGTACCAA
GCCCAGCTCCTACCGAAGCGCCTACACCTACGCCTACCGAGGCGCCGACT
CCCGCCCCTACGCTTGGGCCTACGGAAGCGCCAACTCCCCCTCCTACTGA
GGCACCTACGCCAGCTCCTACGCTCGTACCTACAACAGCACCGACCCCGG
CTCCTACACTACCTCCGATGCCCAGTCCTACGGTCGTGCCCACACCAGTA
CCAAGCCCAGCTCCTACCGAAGCGCCTACACCTACACCTACCGAGGCGCC
GACTCCCGCCACTACGCTTGAGCCTACGGAAGCGCCAACTCCAGCTCCTA
CAGAGCCACCTACACCAGCGCCAACCCTGGCTTCTATCGAGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig19243:1933..4926-

>mRNA_H-paniculata_contig19243.4851.1 ID=mRNA_H-paniculata_contig19243.4851.1|Name=mRNA_H-paniculata_contig19243.4851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4902bp|location=Sequence derived from alignment at H-paniculata_contig19243:1933..4926- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCCTACCGAGACGCCGACACCTACGCCGACACCAGCACCTACCCGAGC
TCCTACCGAGGCCGCGACCCCAGTTCCCACGCCGGCGCCTTCGACCGCAC
CTACTCCAGTTTCGACGATATCTCCAACACCCACTCCAACGCCGTCGCCC
ATAACAACCCCTACCCGAGCTCCTACCGAGGCCCCGACTCCCGGCCCTTC
GCTCTCTCCCACACTAGCACCTACTCGAGCTCCTACCGAGACGCCGACAC
CTACGCCGACACCAGCACCTACCCGAGCTCCTACCGAGGCCGCGACCCCA
GTTCCCACGCCGGCGCCTTCGATCGCACCTACTCCAGTTTCGACGATATC
TCCAACACCCACTCCAACGCCGTCGCCCACAACAATCCCTACCCGAGCTC
CTACCGAGGTCCCGACTCCCGGCCCTTCGCTCTCTCCCACACTAGCACCT
ACTCGAGCTCCTACCGAGACGCCGACACCGACGCCGACACCAGCACCTAC
CCGAGCTCCTACCGAGGCCGCGACCCCAGTTCCCACGCCGGCGCCTTCGA
CCGCACCTACTCCAGTTCCAACGATATCTCCAACACCCACTCCAACGCCG
TCGCCCACGCCAGTGCCTAGCCGAGCTCCTACCGAGGCGCCTACGCCGGT
CCCCACGCCGGCGCCTTCGACAGCACCTACTCCAGCTCCTACCGAGACGC
CGACACCTACGCCGACACCAGCACCTACCCGAGCTCCTACCGAGGCCGCG
ACCCCAGTTCCCACGCCGGCGCCTTCGACCGCACCTACTCCAGTTTCGAC
GATATCTCCAACACCCACTCCAACGCCGTCGCCCATAACAACCCCTACCC
GAGCTCCTACCGAGGCCCCGACTCCCGGCCCTTCGCTCTCTCCCACACTA
GCACCTACTCGAGCTCCTACCGAGACGCCGACACCTACGCCGACACCAGC
ACCTACCCGAGCTCCTACCGAGGCCGCGACCCCAGTTCCCACGCCGGCGC
CTTCGATCGCACCTACTCCAGTTTCGACGATATCTCCAACACCCACTCCA
ACGCCGTCGCCCACAACAATCCCTACCCGAGCTCCTACCGAGGTCCCGAC
TCCCGGCCCTTCGCTCTCTCCCACACTAGCACCTACTCGAGCTCCTACCG
AGACGCCGACACCGACGCCGACACCAGCACCTACCCGAGCTCCTACCGAG
GCCGCGACCCCAGTTCCCACGCCGGCGCCTTCGACCGCACCTACTCCAGT
TCCAACGATATCTCCAACACCCACTCCAACGCCGTCGCCCACGCCAGTGC
CTAGCCGAGCTCCTACCGAGGCGCCTACGCCGGTCCCCACGCCGGCGCCT
TCGACAGCACCTACTCCAGCTCTGACTCCCGCCCCTTCGCTCTCGCCTTC
ACCGGCACCTACTCGACCTCCTACCAAAGCACCGACGCCCGCCCCTACAC
CTACGCCCACACCAGCACCTACTCGAGCTCCTACCGTGGCGCCTACGCCG
GCTCTGACTCCCGCCCCTTCGCTCTCGCCTTCACCGGCACCTACTCGACC
TCCTACCAAAGCACCGACGCCCGCCCCTACACCTACGCCCACACCAGCAC
CTACTCGAGCTCCTACCGTGGCGCCTACGCCGATGCCGACTCCCGCCCCT
TCGCTCTCGCCCACACCACCAACTACTCTAGCTCCTACCAAGGCACCTAC
ACGAGCTCCTACCATCGCAACTACACCCACTCCTACGCCAGCACCTACTC
TAGCTCCTACCGAGGCGCCTACGCCAGTTCCCACGCTTGCGCCTTCGACA
GCACCATCCCCGGCTCCAACAATATCCCCAACACCCGTTCCAACGCCGGC
GCCCACACTAGCCCCGACCCGAGCTCCTAGCGAATTTTCTACGCCCGTCT
CCACGCCGGCGCCTTCCACAGCACCATCCCCGGCTTCAACGGTGTCTGCA
ACAACCGCTCCAACGCCTGCGCCCACACCAGCACCTACCCGAGCTCGTAC
CGAGGATCCTACACCGGTTCCCACGCCCGCACCTTCGACAGCACCATCCC
CAGTTCCAACGACATCTCCAACATCCGCTCCAACACCGGCGCCGACACCA
GCACCCAGCCGAGCTCCGACCGAGGCGCCGACTCCCGCCCCTTCCCTCTC
GCCCACACCAGCTCCTACTCGACCTCCTACCAAGGCGCCGACACCGGCTC
CTACCCGAGCTCCTACCGAGGTACCGACTTCCGCCCCGTCGCTCTCACCT
ACACAAGCACCTACTCGACCTCCTACCAGGGTACCGTCGCCCGCCCCTAC
ACCTACACCTACGACAGCACCTAGTGGAGCTCCTACCGAGGCGCCTACGC
CCGTTCCCACGCCCGCGCCTTCGATAGAACCTACTCCAGTTCCAACGACA
TCTCCAACACTCGCTCCAACGCCGGCGCCAACAACAGAACCCACCCGAGC
TCCTACCGACGTGCCGACCCCCGTCCCTTCGCTCTCGCCCACACCAGCAC
GTACTCGACCTCCTACCGAGGCGCCTACGCCCGCCCCTACGCCAGCATCT
ACCCGAGGTCCTACTGAGGCTCCTACGCCGGTTCCCACGCGCGCGCCTTC
GACAGCACCATCCCCGGCTCCAACGATATCTCCAACACTCGCTCCAACGC
CGGCGCCCACACCGGCTCCTACCCGAGCTCCTACGAAGGTACCTACGCCG
GTCCCCACACCAGTATCAACCCCAGCTCCTACCGAAGCGCCTACACCTGC
GCCTACTGAGGCGCCGACTCCCGCCCCTACGCTTGGACCTACGGAAGCGC
CAACCCCCGCTCCTACTGAGGCACCTACGCCGGCTCCTACGCTCGTACCT
ACAACAGCACCGACCCCGACTCCTACACTACCTCCGACGCCCAGTCCTAC
GGTCGTGCCCACACCAGTACCAAGCCCAGCTCCTACCGAAGCGCCTACAC
CTACGCCTACCGAGGCGCCGACTCCCGCCCCTACGCTTGGGCCTACGGAA
GCGCCAACTCCCCCTCCTACTGAGGCACCTACGCCAGCTCCTACGCTCGT
ACCTACAACAGCACCGACCCCGGCTCCTACACTACCTCCGATGCCCAGTC
CTACGGTCGTGCCCACACCAGTACCAAGCCCAGCTCCTACCGAAGCGCCT
ACACCTACACCTACCGAGGCGCCGACTCCCGCCACTACGCTTGAGCCTAC
GGAAGCGCCAACTCCAGCTCCTACAGAGCCACCTACACCAGCGCCAACCC
TGGCTTCTATCGAGCCAATGCCGACTCCCGCCCCTTCGCTCTCGCCCACA
CCACCAACTACTCTAGCTCCTACCAAGGCACCTACACGAGCTCCTACCAT
CGCAACTACACCCACTCCTACGCCAGCACCTACTCTAGCTCCTACCGAGG
CGCCTACGCCAGTTCCCACGCTTGCGCCTTCGACAGCACCATCCCCGGCT
CCAACAATATCCCCAACACCCGTTCCAACGCCGGCGCCCACACTAGCCCC
GACCCGAGCTCCTAGCGAATTTTCTACGCCCGTCTCCACGCCGGCGCCTT
CCACAGCACCATCCCCGGCTTCAACGGTGTCTGCAACAACCGCTCCAACG
CCTGCGCCCACACCAGCACCTACCCGAGCTCGTACCGAGGATCCTACACC
GGTTCCCACGCCCGCACCTTCGACAGCACCATCCCCAGTTCCAACGACAT
CTCCAACATCCGCTCCAACACCGGCGCCGACACCAGCACCCAGCCGAGCT
CCGACCGAGGCGCCGACTCCCGCCCCTTCCCTCTCGCCCACACCAGCTCC
TACTCGACCTCCTACCAAGGCGCCGACACCGGCTCCTACCCGAGCTCCTA
CCGAGGTACCGACTTCCGCCCCGTCGCTCTCACCTACACAAGCACCTACT
CGACCTCCTACCAGGGTACCGTCGCCCGCCCCTACACCTACACCTACGAC
AGCACCTAGTGGAGCTCCTACCGAGGCGCCTACGCCCGTTCCCACGCCCG
CGCCTTCGATAGAACCTACTCCAGTTCCAACGACATCTCCAACACTCGCT
CCAACGCCGGCGCCAACAACAGAACCCACCCGAGCTCCTACCGACGTGCC
GACCCCCGTCCCTTCGCTCTCGCCCACACCAGCACGTACTCGACCTCCTA
CCGAGGCGCCTACGCCCGCCCCTACGCCAGCATCTACCCGAGGTCCTACT
GAGGCTCCTACGCCGGTTCCCACGCGCGCGCCTTCGACAGCACCATCCCC
GGCTCCAACGATATCTCCAACACTCGCTCCAACGCCGGCGCCCACACCGG
CTCCTACCCGAGCTCCTACGAAGGTACCTACGCCGGTCCCCACACCAGTA
TCAACCCCAGCTCCTACCGAAGCGCCTACACCTGCGCCTACTGAGGCGCC
GACTCCCGCCCCTACGCTTGGACCTACGGAAGCGCCAACCCCCGCTCCTA
CTGAGGCACCTACGCCGGCTCCTACGCTCGTACCTACAACAGCACCGACC
CCGACTCCTACACTACCTCCGACGCCCAGTCCTACGGTCGTGCCCACACC
AGTACCAAGCCCAGCTCCTACCGAAGCGCCTACACCTACGCCTACCGAGG
CGCCGACTCCCGCCCCTACGCTTGGGCCTACGGAAGCGCCAACTCCCCCT
CCTACTGAGGCACCTACGCCAGCTCCTACGCTCGTACCTACAACAGCACC
GACCCCGGCTCCTACACTACCTCCGATGCCCAGTCCTACGGTCGTGCCCA
CACCAGTACCAAGCCCAGCTCCTACCGAAGCGCCTACACCTACACCTACC
GAGGCGCCGACTCCCGCCACTACGCTTGAGCCTACGGAAGCGCCAACTCC
AGCTCCTACAGAGCCACCTACACCAGCGCCAACCCTGGCTTCTATCGAGC
CA
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