mRNA_H-paniculata_contig1923.4844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1923.4844.1
Unique NamemRNA_H-paniculata_contig1923.4844.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A835YZX1_9STRA (Flagellar C1a complex subunit C1a-32-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZX1_9STRA)

HSP 1 Score: 139 bits (350), Expect = 7.190e-40
Identity = 59/115 (51.30%), Postives = 83/115 (72.17%), Query Frame = 1
Query:   22 EKDRIVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQR 366
            EK  ++++FH YNYAFCKE+RFD   TST++S++ D+  QD+  +D  S  + SFDRF +LILRH V+RPPW+ G+   +D+  IT+YV  SYYRH+ +YKH+FT +V   L QR
Sbjct:   15 EKTEVLVDFHLYNYAFCKEQRFDTQKTSTYMSIMTDVLKQDLSQDDPVSGQQASFDRFRDLILRHCVERPPWSVGIFTLEDVAGITEYVVNSYYRHYRIYKHLFTARVETTLTQR 129          
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A6V1RZL7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RZL7_HETAK)

HSP 1 Score: 117 bits (292), Expect = 1.550e-30
Identity = 49/116 (42.24%), Postives = 81/116 (69.83%), Query Frame = 1
Query:   22 EKDR--IVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQ 363
            ++DR  I+L+FH+YNYAFCK+  F     STFLS++KD  D+D   +D+ ++++ SF++ ++ +L H ++RPPW+ G+  P+D+  ++D+V   YYR F LYK++FT +V V   Q
Sbjct:   43 DRDRQDILLDFHFYNYAFCKKLGFGPTKISTFLSIMKDTIDKDFSQHDAVNTIKASFEQLKKTLLMHCIERPPWSVGIFQPEDLQLLSDFVLNGYYRQFRLYKYLFTRRVQVEFTQ 158          
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A7S2SS91_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS91_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.480e-29
Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   22 EKDRIVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQRHP 372
            E+  +V EF++Y YAFCKE  FDA  TSTF+S+ K  F  D   ++    +++SF RF+EL+L H+V+R PW   V +  D+  I  Y+  SY+RHF +YK +FT K+ V L+Q  P
Sbjct:   46 EQKEVVEEFYFYCYAFCKESGFDASKTSTFMSIAKATFHDDRSRDEFSCGMKQSFARFKELVLSHAVNRSPWAVRVFSEDDVARIISYMLNSYFRHFKMYKLIFTRKLQVTLDQSEP 162          
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: W2PIE1_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PIE1_PHYPN)

HSP 1 Score: 101 bits (252), Expect = 1.940e-24
Identity = 46/115 (40.00%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   22 EKDRIVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQR 366
            EK R +L+FH +NY+FC++R F+   TS FL + + +  +D   +DS + L+ SF+ F+ ++L HSV+R P + G+ + +++  I DYV  SYYRHF LYK ++T   ++   QR
Sbjct:   42 EKQRFLLDFHLHNYSFCRQRHFELNQTSVFLGICQTLMKRDF-ASDSTTDLKSSFEFFQAMLLTHSVNRSPKSVGIFSREEVATIVDYVANSYYRHFQLYKCIYTPYYHLHFVQR 155          
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A024UUH6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUH6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.380e-21
Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = 1
Query:   34 IVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQS------SLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQRH 369
            ++L+ + Y Y FCKER      TS  L+++  +  +D+    S        +L  SFD F+ L+L+HSV+RPP +TG+ N  D+ +  +YVT SYYRHF+LY+ +F  + +V + Q H
Sbjct:   50 LLLDMYLYLYVFCKERELTPLKTSVVLAIMHRVIQRDLFLQSSDHGKQAPWTLPDSFDHFQSLLLQHSVERPPISTGIFNAADVASTVEYVTHSYYRHFNLYQVIFIPQTHVSIVQAH 167          
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: T0R735_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R735_SAPDV)

HSP 1 Score: 94.4 bits (233), Expect = 1.440e-21
Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   34 IVLEFHYYNYAFCKERRFDACATSTFLSL-----LKDIF---DQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQ 363
            +V++ + Y YAF K+  F A  TST L++     L D+F   ++D+RT     +L  SF RF+ ++LRHSV+RPP +TG+ +  D+  I DYVT +YYRHFHLY+ +F  + ++ + Q
Sbjct:   53 LVVDMYMYLYAFTKQHEFSAERTSTVLAIVHSLVLTDLFLHGEKDLRT---LPTLPASFSRFQAMLLRHSVERPPMSTGIFDAADVSRIVDYVTHTYYRHFHLYQSIFLPQTHLSIVQ 167          
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A6A3P3Y5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P3Y5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.170e-21
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = 1
Query:   22 EKDRIVLEFHYYNYAFCKE----RRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQR 366
            EK   +L+FH +NY++       R F    TS FL + + +  +D    +S + L+ SFD F+E++L HSV+R P + GV + +++ AI DYVT SYYRHF LYK ++T   +V L QR
Sbjct:   42 EKQSFLLDFHLHNYSYPSPTIHGRHFQLNQTSVFLGICQTLMRRDF-ARESTTDLKSSFDYFQEILLTHSVNRSPKSVGVFSREEVTAIVDYVTNSYYRHFQLYKCIYTPYYHVHLVQR 159          
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A067CXF4_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CXF4_SAPPC)

HSP 1 Score: 92.8 bits (229), Expect = 2.640e-21
Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 1
Query:    7 TRRLTEKDRIVLEFHYYNYAFCKERRFDACATSTFLSL-----LKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQRHP 372
            TR+      +V++ + Y YAF K+  F A  TST L++     L D+F    +   +  +L  SF RF+ ++LRHSV+RPP +TG+ +  D+  I DYVT +YYRHFHLY+ +F  + ++ L    P
Sbjct:   44 TRKAPAPLHLVVDMYMYLYAFTKQHEFSAERTSTVLAIVHSLVLTDLFLHGEKDLRALPTLPGSFGRFQAMLLRHSVERPPMSTGIFDATDVTRIVDYVTHTYYRHFHLYQSIFLPQTHLWLAWMSP 170          
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A329RNJ7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RNJ7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.850e-20
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   22 EKDRIVLEFHYYNYAF----------CKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQR 366
            EK   +L+FH +NY++          C +R F    TS  L + + +  +D    DS ++L+ SFD F+ ++L HSV+R P + G+ + +++ AI DYVT SYYRHF LYK ++T   +V   QR
Sbjct:   42 EKQSFLLDFHLHNYSYPFFLHCAMDYCLQRHFQLNQTSVLLGICQTLMKRDF-ARDSTTNLKSSFDFFQAILLTHSVNRSPKSVGIFSREEVAAIVDYVTNSYYRHFQLYKCIYTPYYHVHFVQR 165          
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A0G4GFV0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GFV0_VITBC)

HSP 1 Score: 92.4 bits (228), Expect = 3.430e-20
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   34 IVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNV 351
            I+ +FH  NY FC E  F     S   SL+  +F Q +RT   +  +  +FD F+ L+LRHSV RPPW+ GV + QD+  +T+YV  +++RHF LY++V+ T+  V
Sbjct:   59 ILSDFHLNNYLFCLESGFSDRKQSALCSLMAHLFRQTVRT---RLDIHAAFDLFKALLLRHSVQRPPWSVGVFSTQDVKDVTNYVLDTFFRHFKLYQYVYVTREEV 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZX1_9STRA7.190e-4051.30Flagellar C1a complex subunit C1a-32-domain-contai... [more]
A0A6V1RZL7_HETAK1.550e-3042.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SS91_9STRA4.480e-2944.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W2PIE1_PHYPN1.940e-2440.00Uncharacterized protein n=7 Tax=Phytophthora paras... [more]
A0A024UUH6_9STRA1.380e-2138.14Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
T0R735_SAPDV1.440e-2141.53Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A6A3P3Y5_9STRA2.170e-2141.18Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A067CXF4_SAPPC2.640e-2138.58Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A329RNJ7_9STRA1.850e-2037.60Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0G4GFV0_VITBC3.430e-2041.51Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1923contigH-paniculata_contig1923:14938..15980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.2e-18
Seed eggNOG ortholog44056.XP_009037610.1
Preferred nameCCDC189
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Flagellar C1a complex subunit C1a-32
EggNOG OGs29WM8@1,2S7XE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size372
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1923.4844.1prot_H-paniculata_contig1923.4844.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1923 14938..15980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929468.7579932-CDS-H-paniculata_contig1923:14937..150131622929468.7579932-CDS-H-paniculata_contig1923:14937..15013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1923 14938..15013 -
1691480874.854139-CDS-H-paniculata_contig1923:14937..150131691480874.854139-CDS-H-paniculata_contig1923:14937..15013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1923 14938..15013 -
1622929468.7751245-CDS-H-paniculata_contig1923:15305..154601622929468.7751245-CDS-H-paniculata_contig1923:15305..15460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1923 15306..15460 -
1691480874.8683276-CDS-H-paniculata_contig1923:15305..154601691480874.8683276-CDS-H-paniculata_contig1923:15305..15460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1923 15306..15460 -
1622929468.7886252-CDS-H-paniculata_contig1923:15839..159801622929468.7886252-CDS-H-paniculata_contig1923:15839..15980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1923 15840..15980 -
1691480874.8756359-CDS-H-paniculata_contig1923:15839..159801691480874.8756359-CDS-H-paniculata_contig1923:15839..15980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1923 15840..15980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1923.4844.1

>prot_H-paniculata_contig1923.4844.1 ID=prot_H-paniculata_contig1923.4844.1|Name=mRNA_H-paniculata_contig1923.4844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MNTRRLTEKDRIVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMR
TNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSY
YRHFHLYKHVFTTKVNVILEQRHP
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mRNA from alignment at H-paniculata_contig1923:14938..15980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1923.4844.1 ID=mRNA_H-paniculata_contig1923.4844.1|Name=mRNA_H-paniculata_contig1923.4844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-paniculata_contig1923:14938..15980- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATACCCGACGCTTGACGGAGAAGGACAGAATCGTGCTGGAGTTTCA CTACTATAACTACGCGTTCTGCAAGGAAAGGCGCTTCGACGCTTGCGCTA CTTCGACTTTTCTCTCCCTCTTGAAAGACATATTTGACCAGGTATACTGT CCAAACGGCCCTGGGTCGTTCCATGAGGCATAAGAAGGCTTGGTTTGAGA AAAACCTGCGCTGTGGGGGCCTGAGGTTGTGTAAACACCTCGCTGATACG ACTTTGGCACGGAGATCCATCATGGTACATTTTCGGGAATCACGTATGTA CAGAGGTGCTGCGGAAATCACGTTTTATGTATGTCATGGCCGTCTAGCAA CTTGTGTGTCACAGGCATCATGGCTCATCCACGACCATTGCAACACCAGA TTTTCTAGCGGCCGAGCGAACTCTGCCGACAGGAGTGCCTGCCAACGTTG GCCATTATGACTTACTACCCATATTTCATTGAACCCCTCAACGTGTGCCT CGCGTCCCAAAAAAATCAAGGACATGCGGACAAATGACTCTCAGTCCTCG CTACGAAAATCCTTCGATCGATTTGAAGAGCTCATACTTCGACATTCCGT CGATCGCCCCCCGTGGACAACGGGGGTTCTTAACCCACAAGACATCGACG CAATCACAGACTACGTCACGACCAGGTGCGTCGAAATACAAAATATACCG TAAGAAGTTCACGTAATTTTCAGGCGTATAGAGGCGTCGTGCACTTGGAG TGAACGAACGAGGGGTTCGCTTTAGTTTGTCTAGCACCCACTTGTGCTAC TGCAGGATGGGGCCTGGTGGGTCGGAGTCGCTTTCCATTCTGGCCTTTGC ACGGCACCTCTAGCTATCCCTTTTGTTGTGCTCTCTCTCTCTCTCTCTCT CTTTCCCTTGGTTGTTTTAACGGGTGTCCTCTTATGCTCGCTGTCATGAA CACCTCTTCATTCGCAGCTACTACCGTCACTTCCACTTGTACAAGCACGT GTTCACGACAAAAGTAAACGTGATACTGGAGCAGCGTCACCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig1923:14938..15980-

>mRNA_H-paniculata_contig1923.4844.1 ID=mRNA_H-paniculata_contig1923.4844.1|Name=mRNA_H-paniculata_contig1923.4844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig1923:14938..15980- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATACCCGACGCTTGACGGAGAAGGACAGAATCGTGCTGGAGTTTCA
CTACTATAACTACGCGTTCTGCAAGGAAAGGCGCTTCGACGCTTGCGCTA
CTTCGACTTTTCTCTCCCTCTTGAAAGACATATTTGACCAGATGAATACC
CGACGCTTGACGGAGAAGGACAGAATCGTGCTGGAGTTTCACTACTATAA
CTACGCGTTCTGCAAGGAAAGGCGCTTCGACGCTTGCGCTACTTCGACTT
TTCTCTCCCTCTTGAAAGACATATTTGACCAGGACATGCGGACAAATGAC
TCTCAGTCCTCGCTACGAAAATCCTTCGATCGATTTGAAGAGCTCATACT
TCGACATTCCGTCGATCGCCCCCCGTGGACAACGGGGGTTCTTAACCCAC
AAGACATCGACGCAATCACAGACTACGTCACGACCAGGACATGCGGACAA
ATGACTCTCAGTCCTCGCTACGAAAATCCTTCGATCGATTTGAAGAGCTC
ATACTTCGACATTCCGTCGATCGCCCCCCGTGGACAACGGGGGTTCTTAA
CCCACAAGACATCGACGCAATCACAGACTACGTCACGACCAGCTACTACC
GTCACTTCCACTTGTACAAGCACGTGTTCACGACAAAAGTAAACGTGATA
CTGGAGCAGCGTCACCCTCTACTACCGTCACTTCCACTTGTACAAGCACG
TGTTCACGACAAAAGTAAACGTGATACTGGAGCAGCGTCACCCT
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