mRNA_H-paniculata_contig1923.4844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A835YZX1_9STRA (Flagellar C1a complex subunit C1a-32-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZX1_9STRA) HSP 1 Score: 139 bits (350), Expect = 7.190e-40 Identity = 59/115 (51.30%), Postives = 83/115 (72.17%), Query Frame = 1
Query: 22 EKDRIVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQR 366
EK ++++FH YNYAFCKE+RFD TST++S++ D+ QD+ +D S + SFDRF +LILRH V+RPPW+ G+ +D+ IT+YV SYYRH+ +YKH+FT +V L QR
Sbjct: 15 EKTEVLVDFHLYNYAFCKEQRFDTQKTSTYMSIMTDVLKQDLSQDDPVSGQQASFDRFRDLILRHCVERPPWSVGIFTLEDVAGITEYVVNSYYRHYRIYKHLFTARVETTLTQR 129
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A6V1RZL7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RZL7_HETAK) HSP 1 Score: 117 bits (292), Expect = 1.550e-30 Identity = 49/116 (42.24%), Postives = 81/116 (69.83%), Query Frame = 1
Query: 22 EKDR--IVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQ 363
++DR I+L+FH+YNYAFCK+ F STFLS++KD D+D +D+ ++++ SF++ ++ +L H ++RPPW+ G+ P+D+ ++D+V YYR F LYK++FT +V V Q
Sbjct: 43 DRDRQDILLDFHFYNYAFCKKLGFGPTKISTFLSIMKDTIDKDFSQHDAVNTIKASFEQLKKTLLMHCIERPPWSVGIFQPEDLQLLSDFVLNGYYRQFRLYKYLFTRRVQVEFTQ 158
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A7S2SS91_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS91_9STRA) HSP 1 Score: 113 bits (282), Expect = 4.480e-29 Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 1
Query: 22 EKDRIVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQRHP 372
E+ +V EF++Y YAFCKE FDA TSTF+S+ K F D ++ +++SF RF+EL+L H+V+R PW V + D+ I Y+ SY+RHF +YK +FT K+ V L+Q P
Sbjct: 46 EQKEVVEEFYFYCYAFCKESGFDASKTSTFMSIAKATFHDDRSRDEFSCGMKQSFARFKELVLSHAVNRSPWAVRVFSEDDVARIISYMLNSYFRHFKMYKLIFTRKLQVTLDQSEP 162
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: W2PIE1_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PIE1_PHYPN) HSP 1 Score: 101 bits (252), Expect = 1.940e-24 Identity = 46/115 (40.00%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 22 EKDRIVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQR 366
EK R +L+FH +NY+FC++R F+ TS FL + + + +D +DS + L+ SF+ F+ ++L HSV+R P + G+ + +++ I DYV SYYRHF LYK ++T ++ QR
Sbjct: 42 EKQRFLLDFHLHNYSFCRQRHFELNQTSVFLGICQTLMKRDF-ASDSTTDLKSSFEFFQAMLLTHSVNRSPKSVGIFSREEVATIVDYVANSYYRHFQLYKCIYTPYYHLHFVQR 155
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A024UUH6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUH6_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.380e-21 Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 34 IVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQS------SLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQRH 369
++L+ + Y Y FCKER TS L+++ + +D+ S +L SFD F+ L+L+HSV+RPP +TG+ N D+ + +YVT SYYRHF+LY+ +F + +V + Q H
Sbjct: 50 LLLDMYLYLYVFCKERELTPLKTSVVLAIMHRVIQRDLFLQSSDHGKQAPWTLPDSFDHFQSLLLQHSVERPPISTGIFNAADVASTVEYVTHSYYRHFNLYQVIFIPQTHVSIVQAH 167
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: T0R735_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R735_SAPDV) HSP 1 Score: 94.4 bits (233), Expect = 1.440e-21 Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = 1
Query: 34 IVLEFHYYNYAFCKERRFDACATSTFLSL-----LKDIF---DQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQ 363
+V++ + Y YAF K+ F A TST L++ L D+F ++D+RT +L SF RF+ ++LRHSV+RPP +TG+ + D+ I DYVT +YYRHFHLY+ +F + ++ + Q
Sbjct: 53 LVVDMYMYLYAFTKQHEFSAERTSTVLAIVHSLVLTDLFLHGEKDLRT---LPTLPASFSRFQAMLLRHSVERPPMSTGIFDAADVSRIVDYVTHTYYRHFHLYQSIFLPQTHLSIVQ 167
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A6A3P3Y5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P3Y5_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.170e-21 Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 22 EKDRIVLEFHYYNYAFCKE----RRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQR 366
EK +L+FH +NY++ R F TS FL + + + +D +S + L+ SFD F+E++L HSV+R P + GV + +++ AI DYVT SYYRHF LYK ++T +V L QR
Sbjct: 42 EKQSFLLDFHLHNYSYPSPTIHGRHFQLNQTSVFLGICQTLMRRDF-ARESTTDLKSSFDYFQEILLTHSVNRSPKSVGVFSREEVTAIVDYVTNSYYRHFQLYKCIYTPYYHVHLVQR 159
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A067CXF4_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CXF4_SAPPC) HSP 1 Score: 92.8 bits (229), Expect = 2.640e-21 Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 7 TRRLTEKDRIVLEFHYYNYAFCKERRFDACATSTFLSL-----LKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQRHP 372
TR+ +V++ + Y YAF K+ F A TST L++ L D+F + + +L SF RF+ ++LRHSV+RPP +TG+ + D+ I DYVT +YYRHFHLY+ +F + ++ L P
Sbjct: 44 TRKAPAPLHLVVDMYMYLYAFTKQHEFSAERTSTVLAIVHSLVLTDLFLHGEKDLRALPTLPGSFGRFQAMLLRHSVERPPMSTGIFDATDVTRIVDYVTHTYYRHFHLYQSIFLPQTHLWLAWMSP 170
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A329RNJ7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RNJ7_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.850e-20 Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 22 EKDRIVLEFHYYNYAF----------CKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNVILEQR 366
EK +L+FH +NY++ C +R F TS L + + + +D DS ++L+ SFD F+ ++L HSV+R P + G+ + +++ AI DYVT SYYRHF LYK ++T +V QR
Sbjct: 42 EKQSFLLDFHLHNYSYPFFLHCAMDYCLQRHFQLNQTSVLLGICQTLMKRDF-ARDSTTNLKSSFDFFQAILLTHSVNRSPKSVGIFSREEVAAIVDYVTNSYYRHFQLYKCIYTPYYHVHFVQR 165
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Match: A0A0G4GFV0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GFV0_VITBC) HSP 1 Score: 92.4 bits (228), Expect = 3.430e-20 Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 34 IVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRTNDSQSSLRKSFDRFEELILRHSVDRPPWTTGVLNPQDIDAITDYVTTSYYRHFHLYKHVFTTKVNV 351
I+ +FH NY FC E F S SL+ +F Q +RT + + +FD F+ L+LRHSV RPPW+ GV + QD+ +T+YV +++RHF LY++V+ T+ V
Sbjct: 59 ILSDFHLNNYLFCLESGFSDRKQSALCSLMAHLFRQTVRT---RLDIHAAFDLFKALLLRHSVQRPPWSVGVFSTQDVKDVTNYVLDTFFRHFKLYQYVYVTREEV 161 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1923.4844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1923.4844.1 >prot_H-paniculata_contig1923.4844.1 ID=prot_H-paniculata_contig1923.4844.1|Name=mRNA_H-paniculata_contig1923.4844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp MNTRRLTEKDRIVLEFHYYNYAFCKERRFDACATSTFLSLLKDIFDQDMRback to top mRNA from alignment at H-paniculata_contig1923:14938..15980- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1923.4844.1 ID=mRNA_H-paniculata_contig1923.4844.1|Name=mRNA_H-paniculata_contig1923.4844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-paniculata_contig1923:14938..15980- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1923:14938..15980- >mRNA_H-paniculata_contig1923.4844.1 ID=mRNA_H-paniculata_contig1923.4844.1|Name=mRNA_H-paniculata_contig1923.4844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig1923:14938..15980- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |