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Homology
BLAST of mRNA_H-paniculata_contig1918.4817.1 vs. uniprot
Match: D7FKY3_ECTSI (Outer dynein arm docking complex protein oda-dc n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKY3_ECTSI) HSP 1 Score: 208 bits (530), Expect = 7.820e-60 Identity = 139/222 (62.61%), Postives = 155/222 (69.82%), Query Frame = 1
Query: 97 QDTFHASNPTDAASTNKGPVVEAESQSPLMENLEGASG---SVPRGFAS--------------SGVGLTSGCGALGTLGGMKSVISIQSKRLAQDVNHVYDRQILFTTKIQFQRARIEDLTFRIAKAEKELEDKRKSAGPETTQTVKGGISATEREIARVENRLQQMLAKASMLDAANTKRKERVNSLRREKMAETKAKRRLEAELERAKATCSSTTRQTQQ 711
QD F AS DA+S+ K P VE SQ G S S+P G +G GL SG KSVIS+QSKRLA DVN+VYDRQIL+T KIQFQR+RIEDLTFRIAKAEKELEDKRK+AGP+ QTVKGG+S TEREI RVENRLQQ L KASMLDAAN +RKE VNSLRREKMAE KA++RL AELERA+A C+STTR TQQ
Sbjct: 5 QDNFQASGVVDASSS-KIPGVEVGSQQAPAPTQGGGSVRGISLPMGMXXXXXXXXXXXXAAFLTGGGLLSG----------KSVISVQSKRLADDVNYVYDRQILYTNKIQFQRSRIEDLTFRIAKAEKELEDKRKTAGPDNAQTVKGGVSTTEREIQRVENRLQQTLMKASMLDAANARRKECVNSLRREKMAEVKAQKRLVAELERARAICASTTRATQQ 215
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 213.8 |
| Seed ortholog evalue | 7.9e-53 |
| Seed eggNOG ortholog | 2880.D7FKY3 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2ENQM@1,2SS36@2759 |
| Ec32 ortholog description | ODA1/DCC2 family |
| Ec32 ortholog | Ec-21_002380.3 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 726 |
| Cds size | 636 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1918.4817.1 >prot_H-paniculata_contig1918.4817.1 ID=prot_H-paniculata_contig1918.4817.1|Name=mRNA_H-paniculata_contig1918.4817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
MSQDTFHASNPTDAASTNKGPVVEAESQSPLMENLEGASGSVPRGFASSG
VGLTSGCGALGTLGGMKSVISIQSKRLAQDVNHVYDRQILFTTKIQFQRA
RIEDLTFRIAKAEKELEDKRKSAGPETTQTVKGGISATEREIARVENRLQ
QMLAKASMLDAANTKRKERVNSLRREKMAETKAKRRLEAELERAKATCSS
TTRQTQQATRL* back to topmRNA from alignment at H-paniculata_contig1918:4290..6562+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1918.4817.1 ID=mRNA_H-paniculata_contig1918.4817.1|Name=mRNA_H-paniculata_contig1918.4817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2273bp|location=Sequence derived from alignment at H-paniculata_contig1918:4290..6562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGTGGATGGAGAGCGCCGTCCTGCGGCGTCAACACACCGAAAACGCAC
CAAGATCTAAAATCACATGACTGCAAGATAGCGCAGTATAATGTCCCAGG
ATACCTTCCACGCGTCGAACCCTACCGATGCAGCTAGTACCAATAAAGGT
CCTGTGGTTGAAGGTAATTGAGGTAGAAGTCAACGCCTGGCCTCGTGTCC
TCTTCTAGGTGTTCGCGTCTGGTGGTGTGATCCCTCGACCGACCCTCGCA
GGACCGCTAGCAGTACTGTCGTATCTCAACCACACTATGGTAGAGCCATG
GTTATAATCATACGCCACACATCGTAGATAATTTAGGAATGTCCGTGAAG
ATTGTTCACATAAACTATTTTACTCGAGTGTAGAGTAAAACAAATATTCC
GGAACAATCACCACCGGTAGTAGGGTAAATACTCTAGCATGCGAAGAGGT
CTTTGGAATGCTCGTGCAGTTGGTATAATCACGGCTGATCTTACATTGCA
CTAGTCGAGCAGCTCGTATCGCAGAATTTTTCGGCCGTTCGGTAAGTTGA
CATTGATTTTATTCTTCTAGTGATGTTACCACCTATTATATGAATAAATA
ACATTAACACCATCCAGCTAAACATGTTATTGTTGTACCTCGCACTTGTC
TCTAGTGAACCGCTTGGCACGTGAAACTGTATGCCTTCTCACATAGAGAC
ACAAGCAACAATTAGCTTATCTGGCAGGATTTCACAACCACCATCTGGTA
TGCATATAGCACATGAAAGCTGCGTTGTTGAGTTGATATCATAAGGATGA
GTGTTTGCGAAGTACCCAAGGCATGACTCCAACTCCGGTGGTGGACGAGT
CGTTCTACGTAGTCACTAACCCTTACCTTGACCCTAACCCTCACTCTAAG
CTTGCTCAGCCATATTTACCAACAGCTCTCACTCAAAATATCTCTCAATA
CCAGCTGAATCGCAATCACCTCTAATGGAGAATCTGGAAGGAGCTAGTGG
AAGCGTACCAAGAGGATTTGCCTCGTCGGGAGTAGGGCTCACAAGCGGAT
GCGGTGCCCTGGGTACTTTGGGTGGCATGAAAAGTGTAATTTCTATCCAG
AGCAAGCGACTGGCGCAAGACGTCAACCACGTGTACGACAGACAGATCCT
TTTCACGACAAAGATACAGTTCCAGAGGGCCCGGATTGAGGACCTGACTT
TCCGGATCGCGAAGGCCGAGAAGGAGCTTGTGAGTGCTTGCTGGGGCTGT
TAGAATAATGGAGATTTATCGCCTGTTAGCACCTCCCAATATCCAACACC
CTCCCCATAGATACTCCTCTCAATGGAGTGATGATTCTTCACATTGGCTT
ACTCACACTATTATACATTGCGACAGTTGTCGTCATATCCATCGTGTACT
GGACGTTTCTGAAAAGATGTCTGGGGGTGTTGCAACGAGCAGGAGGATAA
GCGAAAGAGCGCTGGGCCTGAGACAACACAGACTGTGAAGGGAGGAATTA
GCGCCACCGAACGAGAAATTGCGAGAGTGGAGAATAGACTCCAGCAGGTG
GCTACGTACCAAAGGCATTTCCGACTAATCCAGCGTCGGTGCTGCCACAT
AGTCGGTTGTGGGGAGACGGATGTTGTTTTTAGAACGCTCGAGAGGGTTT
GTCAAGGGTTTGGTAAAGAGATCTATTAATAGACTGGTTATTCGGACCTT
CTGGCTGATGGGATATTTTTTGTGAGAAACCTTCGCAGCGGCCAGTGAGT
GGTGTGTGATTGTTTAATGCCGGGGACAACAATATCACCCAGCGACGGTC
AACGTGAGAGGTACAAGATGCCGCAGCAGAGATCAATGCACGCTTCGGAA
CACGTATCCTCACATATTAAGAGTTATTCTTCGTTGTAGTAGTCAAGGGC
CTTGTCCCCCTATTGGAGGTTCATATCAATATTATCAATAGAAGCTCACT
TTTCCCGTCCTGGACCAATCCAACTCTCCTTTCATTCCACAACCATGACG
ATCGACGTCTTTGCCGCCTGGATTGCTATTTGTCAATATCTACGTGGCCG
CCCGCTGGGGGGACAACCACAACTCGTGGCATTGAAATAGATGCTGGCAA
AGGCGAGCATGCTAGATGCTGCCAATACTAAGCGAAAAGAGCGTGTGAAC
AGCCTACGGAGAGAGAAAATGGCGGAAACAAAGGCGAAACGGCGGCTGGA
GGCTGAGCTGGAAAGGGCAAAAGCTACGTGCTCGAGCACGACAAGACAAA
CTCAACAGGCAACACGATTGTAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig1918:4290..6562+ >mRNA_H-paniculata_contig1918.4817.1 ID=mRNA_H-paniculata_contig1918.4817.1|Name=mRNA_H-paniculata_contig1918.4817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig1918:4290..6562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCCAGGATACCTTCCACGCGTCGAACCCTACCGATGCAGCTAGTAC
CAATAAAGGTCCTGTGGTTGAAGATGTCCCAGGATACCTTCCACGCGTCG
AACCCTACCGATGCAGCTAGTACCAATAAAGGTCCTGTGGTTGAAGCTGA
ATCGCAATCACCTCTAATGGAGAATCTGGAAGGAGCTAGTGGAAGCGTAC
CAAGAGGATTTGCCTCGTCGGGAGTAGGGCTCACAAGCGGATGCGGTGCC
CTGGGTACTTTGGGTGGCATGAAAAGTGTAATTTCTATCCAGAGCAAGCG
ACTGGCGCAAGACGTCAACCACGTGTACGACAGACAGATCCTTTTCACGA
CAAAGATACAGTTCCAGAGGGCCCGGATTGAGGACCTGACTTTCCGGATC
GCGAAGGCCGAGAAGGAGCTTCTGAATCGCAATCACCTCTAATGGAGAAT
CTGGAAGGAGCTAGTGGAAGCGTACCAAGAGGATTTGCCTCGTCGGGAGT
AGGGCTCACAAGCGGATGCGGTGCCCTGGGTACTTTGGGTGGCATGAAAA
GTGTAATTTCTATCCAGAGCAAGCGACTGGCGCAAGACGTCAACCACGTG
TACGACAGACAGATCCTTTTCACGACAAAGATACAGTTCCAGAGGGCCCG
GATTGAGGACCTGACTTTCCGGATCGCGAAGGCCGAGAAGGAGCTTGAGG
ATAAGCGAAAGAGCGCTGGGCCTGAGACAACACAGACTGTGAAGGGAGGA
ATTAGCGCCACCGAACGAGAAATTGCGAGAGTGGAGAATAGACTCCAGCA
GGAGGATAAGCGAAAGAGCGCTGGGCCTGAGACAACACAGACTGTGAAGG
GAGGAATTAGCGCCACCGAACGAGAAATTGCGAGAGTGGAGAATAGACTC
CAGCAGATGCTGGCAAAGGCGAGCATGCTAGATGCTGCCAATACTAAGCG
AAAAGAGCGTGTGAACAGCCTACGGAGAGAGAAAATGGCGGAAACAAAGG
CGAAACGGCGGCTGGAGGCTGAGCTGGAAAGGGCAAAAGCTACGTGCTCG
AGCACGACAAGACAAACTCAACAGGCAACACGATTGTAGATGCTGGCAAA
GGCGAGCATGCTAGATGCTGCCAATACTAAGCGAAAAGAGCGTGTGAACA
GCCTACGGAGAGAGAAAATGGCGGAAACAAAGGCGAAACGGCGGCTGGAG
GCTGAGCTGGAAAGGGCAAAAGCTACGTGCTCGAGCACGACAAGACAAAC
TCAACAGGCAACACGATTGTAG back to top
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