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Homology
BLAST of mRNA_H-paniculata_contig19139.4802.1 vs. uniprot
Match: D8LSZ5_ECTSI (Glycosyltransferase, family GT64 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ5_ECTSI) HSP 1 Score: 180 bits (456), Expect = 5.490e-51 Identity = 98/176 (55.68%), Postives = 113/176 (64.20%), Query Frame = 1
Query: 4 AITSVSGTAPVATFAPVEDIGLLGGISTGEGSGKWWQAPHAVKRSGCLADLNEIFCAHTHHHAPTTRFPPSGDGELQXXXXXXXXTSATCEILRRTSLFASVAALPRRRSFAQVQGRGRGNGLDKE---TVDDLARISRWALAVRAPTLAEFISADMLLVPGKTWRWLTKEDVLGR 522
A+TSVSG PVA FAPV D+GL GGIS GEGSGKWWQAPHA KRS CLADL EIFC P PP D + Q + CE L RT LFAS PR + ++G RG G D + + DL+R+SRW LAVRAPTLAEF+SADMLLVP K W+W K+D+ GR
Sbjct: 347 AVTSVSGLPPVAAFAPVVDVGLFGGISIGEGSGKWWQAPHAKKRSRCLADLREIFCDVADE--PLLPPPPFPDNKEQGATDRRRPRTRRCEPLIRTDLFAST---PRATATPSIRGGVRGRGGDGDGNSSRSDLSRLSRWGLAVRAPTLAEFVSADMLLVPAKLWKWFAKDDIRGR 517
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 182.6 |
| Seed ortholog evalue | 1.6e-43 |
| Seed eggNOG ortholog | 2880.D8LSZ5 |
| Preferred name | EXTL2 |
| KEGG ko | ko:K02367,ko:K02369,ko:K02370,ko:K04794 |
| KEGG Reaction | R05930,R05935,R05936,R10138,R10139 |
| KEGG Pathway | ko00534,ko01100,map00534,map01100 |
| KEGG Module | M00059 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0001888,GO:0003674,GO:0003824,GO:0005488,GO:0005539,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006040,GO:0006044,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0008376,GO:0009225,GO:0009987,GO:0010033,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019276,GO:0023052,GO:0030145,GO:0030968,GO:0031984,GO:0033554,GO:0034620,GO:0034641,GO:0034976,GO:0035248,GO:0035966,GO:0035967,GO:0036498,GO:0042175,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0047237,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055086,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0097367,GO:0098827,GO:1901071,GO:1901135,GO:1901360 |
| EggNOG free text desc. | glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity |
| EggNOG OGs | KOG1022@1,KOG1022@2759 |
| Ec32 ortholog description | Glycosyltransferase, family GT64 |
| Ec32 ortholog | Ec-26_001990.1 |
| EC | 2.4.1.223,2.4.1.224,2.4.1.225,3.1.1.29 |
| COG Functional cat. | J |
| CAZy | GT47,GT64 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01003,ko03012 |
| Exons | 4 |
| Model size | 531 |
| Cds size | 531 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19139.4802.1 >prot_H-paniculata_contig19139.4802.1 ID=prot_H-paniculata_contig19139.4802.1|Name=mRNA_H-paniculata_contig19139.4802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
QAITSVSGTAPVATFAPVEDIGLLGGISTGEGSGKWWQAPHAVKRSGCLA
DLNEIFCAHTHHHAPTTRFPPSGDGELQQQQQQRPPTSATCEILRRTSLF
ASVAALPRRRSFAQVQGRGRGNGLDKETVDDLARISRWALAVRAPTLAEF
ISADMLLVPGKTWRWLTKEDVLGREI* back to topmRNA from alignment at H-paniculata_contig19139:398..3646+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig19139.4802.1 ID=mRNA_H-paniculata_contig19139.4802.1|Name=mRNA_H-paniculata_contig19139.4802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3249bp|location=Sequence derived from alignment at H-paniculata_contig19139:398..3646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGATTACGTCAGTGTCGGGGACAGCACCAGTGGCCACGTTTGCTCC
GGTCGAGGACATCGGTCTGCTCGGCGGCATCAGCACGGGAGAGGGGAGCG
GGAAGTGGTGGCAGGCGCCCCATGCTGTCAAACGTTCGGGGTGAGTCCAG
CGTCGAAAAAGCGAAAACCAAAACGAGTTGGAATCTGTCGATTAATGAAC
GCGGTTTTTAAAAATTACTGTTTATTGCTACTGTAGATAGACCCTGTACA
GGCGACGGCGGCACTCGTGGGCACTATGCAAGCGTCGGGGGTCTCGTAGA
CGGCTATTAGTAGACAATTAAGAAACGCGCTGTCCAAGCGCAGGCTTCAT
TTGTTATTTCCTTCGGAAGGGAGGTGTCACTAAACAGACACTAGTTTTAG
AGAGTGATGATCCACTACGCCAAAGGGTTGAAGTAGAACTCTACCTCTGC
TGTAAACATGGATGTATTTATGTAGGTATCATCATATAACAGCGTGTACT
GTACTGCACTGTCAGCTTAGGATGGCTTTATTCTTTAGGATGAAAACTGT
TTCGTTATAATTAACGCAATATATCCCATACCCAAACACCTAATGAGCTT
GAAATATTATTATCTACTGTAGGGATAGAAAACGCCTACTTTCGATATAG
CTGGGATCAGTGAATGTCAAGATGCAGGGCAAAACAGCAAAATCAAGGAG
AATCGTGAATGGCTACTATATTTTTTTCTTTGAACGCCCCATATCTCGGG
AGCAGAGAGATCAATATGAAAAGCACCAGCACTGACCTAAAGCTAATGCC
ATGTACTTTCAGTTACTCTGTTCGAGTCGTACTTGATTCGGTACGTAATA
TCGAGAAAATAGTGAAAACACGTTTCATTCCAAAAACAGAAGAAATCCTA
AACTTGTGGTACTCACTGTCATATGTTGCAGTGAGCACAGCGTATACATC
TGGACGTGGTTTTGCATCCATCAATATTCATTTTTTTTTGTATATATATG
ACACCGAAATGTATACGGTATACCTGACTATGTCTATATATCGAGAACAT
ATTGAAAAATACCTGTGCGTTAGCTTTTTTTCGAGTTTTTTCGAAACGAA
GATGACCAAAAAAGATAGTACGCAAGAAGGAGAATTCGTGCCACAACCCT
TTTTGCGCTAACGGGTAAGTCAGATGCATACGACGTATCGAAAAATTTGA
ATGGCCGCCCAGAAACAACACCGCGAAATTAGCTTAGCTTCCTACGCTGT
ACGAGTCAGACATTAACGTTCGCGGCGTTTTTTTTTTGCGTTTTTGTATG
ATATATATATATATATATATATACTGAAGTATTTCATCTATGGTCGCAGT
TTTATTTTGTTTAATTGGTGTTCGCATTTTTTTGTTTTATCTTGTTTTAT
CAGTTCATGAAAGACATGGGGCACCAATGGCGCTTATTTACTTGAGTCAC
CCTTCAATAAGGGTGGTGATGGTGGTGCTCCTCTCATTGCACTTTCCATC
CCTTATCCTCAGCGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGGTC
GTTTGTGGACGCAACATTCATTTGATCACGGCGCTTGTCCTCTCATGACA
TGGAGCTTGTCTCGCGCGAAATATTGTATCAAAATCTACTACCGCTAGGT
AGACGTGCTCTCCATTGACAGACTTGTCAACCAAAAATCGAGTTTTGAAG
AAGTGGATAGACCCAATCTGCTGCCTAAGCTGCACACTTGCAGCTACAAT
GTCATGCCTACCCTACTAAGCAGGTCCGGAATGTAAAGTCGACTCTTGTT
TCATATTGGCATGATACAGCAGTCTGCAGTAGTATGGTTAAGTCTTGTCG
GCATCTATATTGCGTTTTTCATTTTCCCTCAATTTCCTCATACGTCACGA
ATACAAGGAAGGTATCTCTCTTTCTTTTACAGGCTGAATTCGGTCCTCGC
ACGCACTACCACGGTCACCCTTGAAGATCTCATCTTCGCCCTACTCTAAT
TTTTCTGAACCATTGTTGAGGGGGATGGATACGTCGTTCAGATCCATGTG
CCTTGAACCTGCGGCCAGGTGCTCATGGTAGTCCCCGGCTTGGTATGACC
CATTTTCGCTGCACCACGGCCACACCCGCGAACGAACATAAACATATAAG
TGTGTTCGCAAGAGCAAACAAAGCGCATTGGAAAAAAATCGCCGCGATGT
ACTACAACTCGATAACGCCTCAAGAAGTAATTTTCGTTACATCTCTGTGA
CGCCCGAACTAGCTAACGTGAACACGTTCCTGAGAGCAAACAGAGCGCGT
GGGAAAAAAGCGTCGCCGTAAAAATCCCGAAGAGCTGACTGTTATATTAG
CATCTAACTCGTGCAGCATCGCGAGCTGAACTACTATACAACTCTCTGTC
GTGTTTTTTCGGCTTTCGGCCGGTGATTTCAAAATCCGAGTCTTCCTCAG
CTTGTCTTGCCGGTCTTCTTGCATATTTTCGTGTACCGTAAGCTTGCCAC
ACGTTGTTGGAAACGCTTCGCGTGAAGTACTTATCTACTACTCAGTATAT
GTAATGAATAAACTGACTTCTCCGTCATATATCCCCCCCCCCCCGCCCCA
CTCTAATGTGAACATTGCATGTTTATCCGGGTGGCTTGCCCTTCTGCTTT
TCGTCCCTCCTCCGGCCGCGGCGGCCTGTCTAATCCATGTGACTCCTTCA
CCAACGAACAGATGCCTGGCGGATCTCAACGAGATTTTTTGCGCACACAC
GCACCATCACGCCCCCACCACTAGATTTCCACCGTCTGGCGATGGTGTCC
ATGCCGATACTAAATCAGGCGACGCCGACTTGCCCTTAGACGTGCAACGA
CGACAAACCAAACAAGCACGACAGGAGCTGCAGCAACAGCAGCAACAACG
ACCACCGACTTCAGCAACTTGCGAAATATTGCGCCGTACAAGCCTCTTCG
CGAGTGTTGCGGCGCTCCCACGAAGGCGATCTTTTGCTGTCAAGGAGAAG
GAGCGGGCGGCTAGCGGTGGCGGCGGCGGCGGATTGCGCGGAGCGCAGCC
GCGGCAGCAAGTACAGGGACGGGGGCGGGGGAACGGACTGGATAAGGAGA
CTGTTGATGACTTGGCGCGAATATCGCGGTGGGCGCTAGCTGTGCGTGCG
CCCACCCTGGCGGAGTTTATCAGCGCGGATATGTTGCTTGTACCGGGAAA
GACCTGGCGATGGTTAACCAAGGAAGATGTGCTCGGACGCGAAATTTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig19139:398..3646+ >mRNA_H-paniculata_contig19139.4802.1 ID=mRNA_H-paniculata_contig19139.4802.1|Name=mRNA_H-paniculata_contig19139.4802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig19139:398..3646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGATTACGTCAGTGTCGGGGACAGCACCAGTGGCCACGTTTGCTCC
GGTCGAGGACATCGGTCTGCTCGGCGGCATCAGCACGGGAGAGGGGAGCG
GGAAGTGGTGGCAGGCGCCCCATGCTGTCAAACGTTCGGGCAGGCGATTA
CGTCAGTGTCGGGGACAGCACCAGTGGCCACGTTTGCTCCGGTCGAGGAC
ATCGGTCTGCTCGGCGGCATCAGCACGGGAGAGGGGAGCGGGAAGTGGTG
GCAGGCGCCCCATGCTGTCAAACGTTCGGGATGCCTGGCGGATCTCAACG
AGATTTTTTGCGCACACACGCACCATCACGCCCCCACCACTAGATTTCCA
CCGTCTGGCGATGGTATGCCTGGCGGATCTCAACGAGATTTTTTGCGCAC
ACACGCACCATCACGCCCCCACCACTAGATTTCCACCGTCTGGCGATGGT
GAGCTGCAGCAACAGCAGCAACAACGACCACCGACTTCAGCAACTTGCGA
AATATTGCGCCGTACAAGCCTCTTCGCGAGTGTTGCGGCGCTCCCACGAA
GGCGATCTTTTGCTGAGCTGCAGCAACAGCAGCAACAACGACCACCGACT
TCAGCAACTTGCGAAATATTGCGCCGTACAAGCCTCTTCGCGAGTGTTGC
GGCGCTCCCACGAAGGCGATCTTTTGCTCAAGTACAGGGACGGGGGCGGG
GGAACGGACTGGATAAGGAGACTGTTGATGACTTGGCGCGAATATCGCGG
TGGGCGCTAGCTGTGCGTGCGCCCACCCTGGCGGAGTTTATCAGCGCGGA
TATGTTGCTTGTACCGGGAAAGACCTGGCGATGGTTAACCAAGGAAGATG
TGCTCGGACGCGAAATTTGACAAGTACAGGGACGGGGGCGGGGGAACGGA
CTGGATAAGGAGACTGTTGATGACTTGGCGCGAATATCGCGGTGGGCGCT
AGCTGTGCGTGCGCCCACCCTGGCGGAGTTTATCAGCGCGGATATGTTGC
TTGTACCGGGAAAGACCTGGCGATGGTTAACCAAGGAAGATGTGCTCGGA
CGCGAAATTTGA back to top
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